Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G32532 Trifolium pratense HOM05D005945 ORTHO05D006749 0.0e+00 1934.1 986 100.0
Medtr4g019490 Medicago truncatula HOM05D005945 ORTHO05D006749 0.0e+00 1314.7 1060 69.5
Psat7g242000 Pisum sativum HOM05D005945 ORTHO05D006749 1.2e-282 976.9 999 58.5
Ca_03064_v3 Cicer arietinum L. HOM05D005945 ORTHO05D006749 9.8e-245 850.9 996 53.8
Lj3g0003314 Lotus japonicus HOM05D005945 ORTHO05D006749 9.8e-144 515.4 994 38.8
Glyma.01G104600 Glycine max HOM05D005945 ORTHO05D006749 1.3e-140 505.0 1066 37.6
Glyma.03G071500 Glycine max HOM05D005945 ORTHO05D006749 6.1e-138 496.1 1013 38.5
Phvul.010G012000 Phaseolus vulgaris HOM05D005945 ORTHO05D006749 2.3e-132 477.6 993 38.1
Lj2g0002553 Lotus japonicus HOM05D005945 ORTHO05D006749 2.7e-125 454.1 990 36.4
VMungo0331G0095 Vigna mungo HOM05D005945 ORTHO05D006749 3.6e-122 443.7 992 36.5
arahy.Tifrunner.gnm1.ann1.Q0ZVI3 Arachis hypogaea HOM05D005945 ORTHO05D006749 9.2e-118 429.1 995 35.7
arahy.Tifrunner.gnm1.ann1.01TKSZ Arachis hypogaea HOM05D005945 ORTHO05D006749 5.0e-116 423.3 1028 34.4
Lalb_Chr03g0042671 Lupinus albus HOM05D005945 ORTHO05D006749 1.9e-102 378.3 1001 33.3
CiPaw.15G076000 Carya illinoinensis HOM05D005945 ORTHO05D006749 1.1e-62 246.1 1084 28.4
QL02p007988 Quercus lobata HOM05D005945 ORTHO05D006749 3.2e-62 244.6 1062 28.0
Cfa018140 Carpinus fangiana HOM05D005945 ORTHO05D006749 4.3e-59 234.2 1055 27.2
Gorai.010G010800 Gossypium raimondii HOM05D005945 ORTHO05D006749 7.9e-53 213.4 1012 28.0
Haze_17984 Corylus avellana HOM05D005945 ORTHO05D006749 3.9e-52 211.1 997 27.9
Dinv39407 Davidia involucrata HOM05D005945 ORTHO05D006749 5.1e-52 210.7 1022 27.2
Potri.014G181200 Populus trichocarpa HOM05D005945 ORTHO05D006749 5.1e-52 210.7 1057 27.3
Gohir.D06G008100 Gossypium hirsutum HOM05D005945 ORTHO05D006749 2.0e-51 208.8 1015 27.8
Duzib093G2051 Durio zibethinus HOM05D005945 ORTHO05D006749 4.4e-51 207.6 1028 28.0
Thecc.08G024700 Theobroma cacao HOM05D005945 ORTHO05D006749 9.7e-51 206.5 1024 28.0
Prupe.1G381200 Prunus persica HOM05D005945 ORTHO05D006749 2.4e-49 201.8 1018 27.1
CANSAT25G3494 Cannabis sativa HOM05D005945 ORTHO05D006749 9.4e-46 189.9 1012 26.9
CsaV3_2G028570 Cucumis sativus L. HOM05D005945 ORTHO05D006749 8.0e-45 186.8 339 38.9
COL.COLO4_26338 Corchorus olitorius HOM05D005945 ORTHO05D006749 1.0e-44 186.4 1019 27.3
Actinidia15315 Actinidia chinensis HOM05D005945 ORTHO05D006749 1.8e-44 185.7 1025 26.6
MD08G1033800 Malus domestica HOM05D005945 ORTHO05D006749 1.8e-44 185.7 447 35.3
Manes.18G028200 Manihot esculenta HOM05D005945 ORTHO05D006749 3.9e-44 184.5 1013 25.0
Gohir.A06G010700 Gossypium hirsutum HOM05D005945 ORTHO05D006749 8.8e-44 183.3 1012 27.5
ECA247G0868 Erigeron canadensis HOM05D005945 ORTHO05D006749 1.1e-43 183.0 1035 27.0
FvH4_2g39990 Fragaria vesca HOM05D005945 ORTHO05D006749 1.5e-43 182.6 1011 25.7
GSVIVG01009690001 Vitis vinifera HOM05D005945 ORTHO05D006749 2.0e-43 182.2 263 44.5
CSS0001698 Camellia sinensis var. sinensis HOM05D005945 ORTHO05D006749 3.3e-43 181.4 671 30.6
CSS0038834 Camellia sinensis var. sinensis HOM05D005945 ORTHO05D006749 9.7e-43 179.9 674 30.9
Cpa.g.sc64.76 Carica papaya HOM05D005945 ORTHO05D006749 1.1e-41 176.4 1041 26.6
FAN20G0334 Fragaria x ananassa HOM05D005945 ORTHO05D006749 4.1e-41 174.5 1021 25.8
Nitab4.5_0000110g0520 Nicotiana tabacum HOM05D005945 ORTHO05D006749 5.3e-41 174.1 291 41.6
Oeu056183.1 Olea europaea HOM05D005945 ORTHO05D006749 5.3e-41 174.1 274 45.3
Hund26580 Selenicereus undatus HOM05D005945 ORTHO05D006749 5.3e-41 174.1 263 41.8
FAN27G1966 Fragaria x ananassa HOM05D005945 ORTHO05D006749 7.0e-41 173.7 1021 25.0
Migut.C00710 Erythranthe guttata HOM05D005945 ORTHO05D006749 2.6e-40 171.8 273 40.3
FAN15G0837 Fragaria x ananassa HOM05D005945 ORTHO05D006749 3.5e-40 171.4 1016 25.2
RcHm_v2.0_Chr6g0300761 Rosa chinensis HOM05D005945 ORTHO05D006749 5.9e-40 170.6 1011 26.0
Cc10_g03040 Coffea canephora HOM05D005945 ORTHO05D006749 1.7e-39 169.1 998 25.7
Nitab4.5_0003783g0040 Nicotiana tabacum HOM05D005945 ORTHO05D006749 2.9e-39 168.3 531 31.1
Sed0009733 Sechium edule HOM05D005945 ORTHO05D006749 2.9e-39 168.3 1000 26.2
Lsat_1_v5_gn_1_17620 Lactuca sativa HOM05D005945 ORTHO05D006749 3.8e-39 167.9 261 44.8
MSTRG.25161 Avicennia marina HOM05D005945 ORTHO05D006749 6.5e-39 167.2 492 31.7
ClCG08G015230 Citrullus lanatus HOM05D005945 ORTHO05D006749 6.5e-39 167.2 995 25.9
Sopen04g033790 Solanum pennellii HOM05D005945 ORTHO05D006749 2.5e-38 165.2 295 40.7
Solyc04g080200.4 Solanum lycopersicum HOM05D005945 ORTHO05D006749 3.2e-38 164.9 295 40.7
Sabra14G0141200 Salix brachista HOM05D005945 ORTHO05D006749 4.2e-38 164.5 1052 25.8
PGSC0003DMG400005162 Solanum tuberosum HOM05D005945 ORTHO05D006749 5.5e-38 164.1 263 43.3
Manes.05G161400 Manihot esculenta HOM05D005945 ORTHO05D006749 1.2e-37 162.9 1001 25.2
Peaxi162Scf00690g00118 Petunia axillaris HOM05D005945 ORTHO05D006749 2.1e-37 162.2 272 41.5
Dinv36067 Davidia involucrata HOM05D005945 ORTHO05D006749 3.6e-37 161.4 226 45.6
TAR376G0838 Trochodendron aralioides HOM05D005945 ORTHO05D006749 3.6e-37 161.4 269 40.1
Lalb_Chr19g0125071 Lupinus albus HOM05D005945 ORTHO05D006749 4.7e-37 161.0 211 48.8
SGA_v2.0_scaffold326G48709 Striga asiatica HOM05D005945 ORTHO05D006749 4.7e-37 161.0 340 37.4
Oeu036192.1 Olea europaea HOM05D005945 ORTHO05D006749 6.1e-37 160.6 294 40.5
MELO3C010931.2 Cucumis melo HOM05D005945 ORTHO05D006749 8.0e-37 160.2 1001 26.0
HanXRQChr04g0105591 Helianthus annuus HOM05D005945 ORTHO05D006749 1.8e-36 159.1 269 40.9
Carub.0005s2360 Capsella rubella HOM05D005945 ORTHO05D006749 2.3e-36 158.7 348 33.3
THA.LOC104803244 Tarenaya hassleriana HOM05D005945 ORTHO05D006749 3.0e-36 158.3 464 32.1
TWI12G1232 Tripterygium wilfordii HOM05D005945 ORTHO05D006749 4.0e-36 157.9 382 32.5
TAR628G0886 Trochodendron aralioides HOM05D005945 ORTHO05D006749 4.0e-36 157.9 272 39.7
AL5G38260 Arabidopsis lyrata HOM05D005945 ORTHO05D006749 5.2e-36 157.5 241 40.2
Eucgr.F01555 Eucalyptus grandis HOM05D005945 ORTHO05D006749 2.6e-35 155.2 300 37.3
AT3G56870 Arabidopsis thaliana HOM05D005945 ORTHO05D006749 4.8e-34 151.0 457 29.3
BolC8t50829H Brassica oleracea HOM05D005945 ORTHO05D006749 4.8e-34 151.0 319 35.4
HanXRQChr04g0105581 Helianthus annuus HOM05D005945 ORTHO05D006749 4.8e-34 151.0 325 38.5
Sc15g0006890 Simmondsia chinensis HOM05D005945 ORTHO05D006749 4.8e-34 151.0 1029 26.0
CARHR167020 Cardamine hirsuta HOM05D005945 ORTHO05D006749 8.2e-34 150.2 380 33.2
BcaC07g39998 Brassica carinata HOM05D005945 ORTHO05D006749 2.4e-33 148.7 319 35.1
C08p32110 Brassica napus HOM05D005945 ORTHO05D006749 2.4e-33 148.7 319 35.1
Thhalv10005811m.g Eutrema salsugineum HOM05D005945 ORTHO05D006749 7.0e-33 147.1 394 31.2
DCAR_008766 Daucus carota HOM05D005945 ORTHO05D006749 1.2e-32 146.4 298 36.6
PGR031G1506 Punica granatum HOM05D005945 ORTHO05D006749 1.6e-32 146.0 249 39.8
BcaC07g40112 Brassica carinata HOM05D005945 ORTHO05D006749 2.0e-32 145.6 335 33.4
Lj4A42T73 Lonicera japonica HOM05D005945 ORTHO05D006749 2.0e-32 145.6 178 46.1
MD15G1030400 Malus domestica HOM05D005945 ORTHO05D006749 2.0e-32 145.6 953 26.2
A09p49740 Brassica napus HOM05D005945 ORTHO05D006749 2.7e-32 145.2 344 34.9
BraA09t40427Z Brassica rapa HOM05D005945 ORTHO05D006749 2.7e-32 145.2 344 34.9
Sp5g05720 Schrenkiella parvula HOM05D005945 ORTHO05D006749 1.7e-31 142.5 350 33.4
Gohir.D02G094500 Gossypium hirsutum HOM05D005945 ORTHO05D006749 2.2e-31 142.1 228 40.4
PSO675G9049 Papaver somniferum HOM05D005945 ORTHO05D006749 2.9e-31 141.7 329 33.1
PSO541G4169 Papaver somniferum HOM05D005945 ORTHO05D006749 3.8e-31 141.4 343 32.1
Atru.chr13.502 Acer truncatum HOM05D005945 ORTHO05D006749 3.2e-30 138.3 225 41.3
Gorai.005G107400 Gossypium raimondii HOM05D005945 ORTHO05D006749 1.6e-29 136.0 230 40.0
Lalb_Chr19g0125061 Lupinus albus HOM05D005945 ORTHO05D006749 1.6e-29 136.0 661 28.0
Aa31LG10G11720 Aethionema arabicum HOM05D005945 ORTHO05D006749 6.8e-28 130.6 277 36.1
Ah.11g043130 Amaranthus hybridus HOM05D005945 ORTHO05D006749 5.7e-27 127.5 1055 24.1
MBI16_g17464_MAGBIO Magnolia biondii HOM05D005945 ORTHO05D006749 5.7e-27 127.5 268 36.9
Zm00001eb021170 Zea mays HOM05D005945 ORTHO05D006749 5.7e-27 127.5 258 33.3
TAR628G0416 Trochodendron aralioides HOM05D005945 ORTHO05D006749 7.5e-27 127.1 188 43.1
EL10Ac1g01817 Beta vulgaris HOM05D005945 ORTHO05D006749 9.8e-27 126.7 1026 24.5
AUR62043686 Chenopodium quinoa HOM05D005945 ORTHO05D006749 2.2e-26 125.6 275 37.8
Nn5g29549 Nelumbo nucifera HOM05D005945 ORTHO05D006749 2.8e-26 125.2 464 26.9
Sed0010063 Sechium edule HOM05D005945 ORTHO05D006749 2.8e-26 125.2 997 24.5
Os03g0594700 Oryza sativa ssp. japonica HOM05D005945 ORTHO05D006749 8.3e-26 123.6 371 29.4
AUR62038825 Chenopodium quinoa HOM05D005945 ORTHO05D006749 1.1e-25 123.2 975 25.3
Rhsim06G0034700 Rhododendron simsii HOM05D005945 ORTHO05D006749 4.1e-25 121.3 1024 24.4
HPP92_021270 Vanilla planifolia HOM05D005945 ORTHO05D006749 1.6e-24 119.4 247 37.2
Zm00001eb404680 Zea mays HOM05D005945 ORTHO05D006749 2.0e-24 119.0 250 34.4
ATR0618G067 Amborella trichopoda HOM05D005945 ORTHO05D006749 2.1e-21 109.0 209 39.2
vmacro21631 Vaccinium macrocarpon HOM05D005945 ORTHO05D006749 2.1e-21 109.0 173 39.9
Aqoxy4G01586 Aquilegia oxysepala HOM05D005945 ORTHO05D006749 4.0e-20 104.8 1042 24.8
Aqoxy4G01559 Aquilegia oxysepala HOM05D005945 ORTHO05D006749 1.5e-19 102.8 256 31.2
Actinidia22556 Actinidia chinensis HOM05D005945 ORTHO05D006749 9.8e-19 100.1 93 57.0
SEGI_34412 Sequoiadendron giganteum HOM05D057448 ORTHO05D006749 1.3e-18 99.8 159 39.0
Aqoxy6G01057 Aquilegia oxysepala HOM05D005945 ORTHO05D006749 3.7e-18 98.2 1061 23.5
Ah.05g167400 Amaranthus hybridus HOM05D005945 ORTHO05D006749 4.5e-16 91.3 281 33.1
Sc18g0006320 Simmondsia chinensis HOM05D005945 ORTHO05D006749 1.0e-12 80.1 250 34.8
Atru.chr13.504 Acer truncatum HOM05D005945 ORTHO05D006749 2.6e-11 75.5 413 25.9
vmacro21630 Vaccinium macrocarpon HOM05D005945 ORTHO05D006749 3.4e-11 75.1 275 31.6
TPR.G14103 Trifolium pratense HOM05D000254 ORTHO05D000165 6.4e-10 70.9 41 78.0
CDE04G3738 Ceratophyllum demersum HOM05D060868 ORTHO05D006749 2.4e-09 68.9 167 31.1
TAR381G0602 Trochodendron aralioides HOM05D005945 ORTHO05D006749 7.8e-08 63.9 126 37.3
AagrBONN_evm.TU.Sc2ySwM_344.3266 Anthoceros agrestis HOM05D005945 ORTHO05D006749 8.6e-07 60.5 133 31.6
HPP92_021280 Vanilla planifolia HOM05D050438 ORTHO05D006749 2.5e-06 58.9 247 30.0
THA.LOC104803300 Tarenaya hassleriana HOM05D005945 ORTHO05D006749 5.6e-06 57.8 235 29.8


User provided reference genes

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