Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G32516 Trifolium pratense HOM05D004515 ORTHO05D006676 8.2e-27 122.9 57 100.0
TPR.G18905 Trifolium pratense HOM05D000290 ORTHO05D006676 2.3e-21 104.8 60 83.3
Psat2g043960 Pisum sativum HOM05D000290 ORTHO05D006676 8.7e-21 102.8 60 81.7
arahy.Tifrunner.gnm1.ann1.NBYX54 Arachis hypogaea HOM05D000290 ORTHO05D006676 1.1e-20 102.4 60 81.7
Ca_05767_v3 Cicer arietinum L. HOM05D000290 ORTHO05D006676 1.5e-20 102.1 60 81.7
Lalb_Chr04g0251481 Lupinus albus HOM05D000290 ORTHO05D006676 4.3e-20 100.5 60 80.0
Medtr5g077080 Medicago truncatula HOM05D000290 ORTHO05D006676 5.7e-20 100.1 60 78.3
LjContig00141g0021713 Lotus japonicus HOM05D000290 ORTHO05D006676 1.6e-19 98.6 60 76.7
Phvul.008G239800 Phaseolus vulgaris HOM05D000290 ORTHO05D006676 1.4e-18 95.5 60 76.7
VMungo0647G0176 Vigna mungo HOM05D000290 ORTHO05D006676 1.4e-18 95.5 60 76.7
Glyma.02G241300 Glycine max HOM05D000290 ORTHO05D006676 2.4e-18 94.7 60 76.7
Zm00001eb201710 Zea mays HOM05D000290 ORTHO05D006676 4.5e-17 90.5 60 65.0
arahy.Tifrunner.gnm1.ann1.BI36IT Arachis hypogaea HOM05D000290 ORTHO05D006676 7.6e-17 89.7 56 76.8
TWI74G0971 Tripterygium wilfordii HOM05D000290 ORTHO05D006676 1.0e-16 89.4 60 61.7
CSS0016026 Camellia sinensis var. sinensis HOM05D004515 ORTHO05D006676 2.2e-16 88.2 60 61.7
vmacro20482 Vaccinium macrocarpon HOM05D000290 ORTHO05D006676 2.9e-16 87.8 60 63.3
Potri.004G075100 Populus trichocarpa HOM05D000290 ORTHO05D006676 3.8e-16 87.4 60 60.0
Sed0027292 Sechium edule HOM05D000290 ORTHO05D006676 5.0e-16 87.0 60 60.0
Cfa007761 Carpinus fangiana HOM05D000290 ORTHO05D006676 6.5e-16 86.7 60 60.0
Haze_14311 Corylus avellana HOM05D000290 ORTHO05D006676 6.5e-16 86.7 60 60.0
TAR629G2667 Trochodendron aralioides HOM05D000290 ORTHO05D006676 6.5e-16 86.7 60 61.7
QL02p060375 Quercus lobata HOM05D000290 ORTHO05D006676 8.5e-16 86.3 60 63.3
ClCG05G012110 Citrullus lanatus HOM05D000290 ORTHO05D006676 1.1e-15 85.9 60 60.0
CsaV3_3G020320 Cucumis sativus L. HOM05D000290 ORTHO05D006676 1.1e-15 85.9 60 60.0
Manes.01G122600 Manihot esculenta HOM05D000290 ORTHO05D006676 1.1e-15 85.9 60 60.0
Sabra04G0049700 Salix brachista HOM05D000290 ORTHO05D006676 1.1e-15 85.9 60 58.3
DCAR_003415 Daucus carota HOM05D000238 ORTHO05D001156 1.4e-15 85.5 60 61.7
MELO3C023760.2 Cucumis melo HOM05D000290 ORTHO05D006676 1.9e-15 85.1 60 60.0
Eucgr.J01643 Eucalyptus grandis HOM05D000290 ORTHO05D006676 1.9e-15 85.1 60 58.3
Os11g0549635 Oryza sativa ssp. japonica HOM05D000290 ORTHO05D006676 1.9e-15 85.1 60 60.0
Atru.chr12.1226 Acer truncatum HOM05D000290 ORTHO05D006676 2.5e-15 84.7 60 61.7
Lj2C513G4 Lonicera japonica HOM05D000290 ORTHO05D006676 2.5e-15 84.7 60 60.0
Nn4g24663 Nelumbo nucifera HOM05D000290 ORTHO05D006676 2.5e-15 84.7 60 61.7
Aqoxy3G04138_Aqoxy3G04139 Aquilegia oxysepala HOM05D000290 ORTHO05D006676 3.2e-15 84.3 60 60.0
PGR042G1712 Punica granatum HOM05D000290 ORTHO05D006676 3.2e-15 84.3 60 56.7
Migut.K01085 Erythranthe guttata HOM05D000290 ORTHO05D006676 4.2e-15 84.0 59 55.9
Sc14g0006520 Simmondsia chinensis HOM05D000290 ORTHO05D006676 4.2e-15 84.0 60 60.0
Os11g0549686 Oryza sativa ssp. japonica HOM05D000290 ORTHO05D006676 5.5e-15 83.6 60 58.3
RcHm_v2.0_Chr3g0490181 Rosa chinensis HOM05D000290 ORTHO05D006676 5.5e-15 83.6 60 56.7
GSVIVG01035242001 Vitis vinifera HOM05D000290 ORTHO05D006676 5.5e-15 83.6 62 56.5
Dinv28236 Davidia involucrata HOM05D000290 ORTHO05D006676 7.2e-15 83.2 60 60.0
FvH4_1g30310 Fragaria vesca HOM05D000290 ORTHO05D006676 7.2e-15 83.2 60 55.0
AT1G65950 Arabidopsis thaliana HOM05D000290 ORTHO05D006676 9.3e-15 82.8 60 63.3
Carub.0002s1190 Capsella rubella HOM05D000290 ORTHO05D006676 9.3e-15 82.8 60 63.3
CiPaw.04G048800 Carya illinoinensis HOM05D000290 ORTHO05D006676 9.3e-15 82.8 60 56.7
AUR62018236 Chenopodium quinoa HOM05D000290 ORTHO05D006676 9.3e-15 82.8 60 55.0
SalBow5G1779 Salvia bowleyana HOM05D000290 ORTHO05D006676 9.3e-15 82.8 60 56.7
SalBow5G4017 Salvia bowleyana HOM05D000290 ORTHO05D006676 9.3e-15 82.8 60 56.7
AL2G23430 Arabidopsis lyrata HOM05D000290 ORTHO05D006676 1.2e-14 82.4 60 63.3
HanXRQChr09g0259791 Helianthus annuus HOM05D000290 ORTHO05D006676 1.2e-14 82.4 60 58.3
Prupe.3G015600 Prunus persica HOM05D000290 ORTHO05D006676 1.2e-14 82.4 60 56.7
MD17G1270600 Malus domestica HOM05D000290 ORTHO05D006676 1.6e-14 82.0 60 58.3
Actinidia17170 Actinidia chinensis HOM05D000290 ORTHO05D006676 2.1e-14 81.6 60 55.0
SMO365G0022 Selaginella moellendorffii HOM05D000290 ORTHO05D006676 2.7e-14 81.3 64 54.7
ECA246G5015 Erigeron canadensis HOM05D000290 ORTHO05D006676 3.6e-14 80.9 60 58.3
Gohir.A07G169400 Gossypium hirsutum HOM05D000290 ORTHO05D006676 4.6e-14 80.5 60 56.7
Lsat_1_v5_gn_8_112060 Lactuca sativa HOM05D000290 ORTHO05D006676 4.6e-14 80.5 60 56.7
PSO063G2011 Papaver somniferum HOM05D000290 ORTHO05D006676 6.1e-14 80.1 60 56.7
Thecc.04G000900 Theobroma cacao HOM05D000290 ORTHO05D006676 6.1e-14 80.1 60 55.0
Ciclev10019576m.g Citrus clementina HOM05D000290 ORTHO05D006676 7.9e-14 79.7 60 56.7
Duzib138G1691 Durio zibethinus HOM05D000290 ORTHO05D006676 7.9e-14 79.7 60 56.7
Mapoly0097s0048 Marchantia polymorpha HOM05D000290 ORTHO05D006676 7.9e-14 79.7 64 56.2
SGA_v2.0_scaffold45G17125 Striga asiatica HOM05D000290 ORTHO05D006676 7.9e-14 79.7 60 55.0
BcaC08g46093 Brassica carinata HOM05D000290 ORTHO05D006676 1.0e-13 79.3 60 61.7
A07p33030 Brassica napus HOM05D000290 ORTHO05D006676 1.0e-13 79.3 60 61.7
BraA07t30931Z Brassica rapa HOM05D000290 ORTHO05D006676 1.0e-13 79.3 60 61.7
Thhalv10018274m.g Eutrema salsugineum HOM05D000290 ORTHO05D006676 1.0e-13 79.3 60 61.7
BcaB03g15306 Brassica carinata HOM05D000290 ORTHO05D006676 1.4e-13 79.0 60 61.7
C06p39280 Brassica napus HOM05D000290 ORTHO05D006676 1.4e-13 79.0 60 61.7
BolC6t39021H Brassica oleracea HOM05D000290 ORTHO05D006676 1.4e-13 79.0 60 61.7
Oeu009443.1 Olea europaea HOM05D000290 ORTHO05D006676 1.8e-13 78.6 60 55.0
Sp5g21020 Schrenkiella parvula HOM05D000290 ORTHO05D006676 1.8e-13 78.6 60 61.7
MSTRG.3678 Avicennia marina HOM05D000290 ORTHO05D006676 2.3e-13 78.2 60 51.7
Gohir.D07G175800 Gossypium hirsutum HOM05D000290 ORTHO05D006676 2.3e-13 78.2 60 56.7
Gorai.001G196700 Gossypium raimondii HOM05D000290 ORTHO05D006676 2.3e-13 78.2 60 56.7
Ah.10g032610 Amaranthus hybridus HOM05D000290 ORTHO05D006676 3.0e-13 77.8 60 51.7
CANSAT01G1953 Cannabis sativa HOM05D000290 ORTHO05D006676 3.0e-13 77.8 60 55.0
Eucgr.J01633 Eucalyptus grandis HOM05D004515 ORTHO05D006676 6.7e-13 76.6 52 59.6
THA.LOC104822112 Tarenaya hassleriana HOM05D000290 ORTHO05D006676 8.8e-13 76.3 60 58.3
TPR.G8099 Trifolium pratense HOM05D000294 ORTHO05D000177 8.8e-13 76.3 46 82.6
unitig_32.g11782 Utricularia gibba HOM05D000290 ORTHO05D006676 1.5e-12 75.5 60 50.0
Rhsim10G0183800 Rhododendron simsii HOM05D000290 ORTHO05D006676 5.7e-12 73.6 56 55.4
Pp3c13_6150 Physcomitrium patens HOM05D000290 ORTHO05D006676 9.7e-12 72.8 64 51.6
PGSC0003DMG400045947 Solanum tuberosum HOM05D000290 ORTHO05D006676 1.3e-11 72.4 60 55.0
PGSC0003DMG404029448 Solanum tuberosum HOM05D000290 ORTHO05D006676 1.3e-11 72.4 60 55.0
Cc07_g12870 Coffea canephora HOM05D000290 ORTHO05D006676 2.2e-11 71.6 59 52.5
Solyc04g008300.1 Solanum lycopersicum HOM05D000290 ORTHO05D006676 2.8e-11 71.2 60 53.3
Sopen04g003420 Solanum pennellii HOM05D000290 ORTHO05D006676 2.8e-11 71.2 60 53.3
FAN23G1057 Fragaria x ananassa HOM05D004515 ORTHO05D006676 8.2e-11 69.7 56 50.0
FAN26G0295 Fragaria x ananassa HOM05D000290 ORTHO05D006676 8.2e-11 69.7 56 50.0
SEGI_12402 Sequoiadendron giganteum HOM05D004515 ORTHO05D006676 1.1e-10 69.3 48 60.4
FAN19G0545 Fragaria x ananassa HOM05D000290 ORTHO05D006676 2.4e-10 68.2 56 48.2
PGSC0003DMG400029496 Solanum tuberosum HOM05D000290 ORTHO05D006676 9.1e-10 66.2 60 51.7
MCO16G390 Micromonas commoda HOM05D000290 ORTHO05D006013 1.5e-09 65.5 49 53.1
FAN28G0448 Fragaria x ananassa HOM05D000290 ORTHO05D006676 3.4e-09 64.3 56 46.4
MCO14G465 Micromonas commoda HOM05D000290 ORTHO05D006676 3.4e-09 64.3 63 46.0
CBR_g48308 Chara braunii HOM05D000290 ORTHO05D006676 2.2e-08 61.6 74 41.9
HPP92_021276 Vanilla planifolia HOM05D002023 ORTHO05D002049 5.0e-08 60.5 36 66.7
Haze_26396 Corylus avellana HOM05D000290 ORTHO05D006013 1.9e-07 58.5 52 46.2
Cre03.g150600 Chlamydomonas reinhardtii HOM05D000290 ORTHO05D006676 2.5e-07 58.2 72 37.5
Aqoxy2G00906 Aquilegia oxysepala HOM05D004515 ORTHO05D006013 5.5e-07 57.0 62 46.8
FvH4_7g24400 Fragaria vesca HOM05D004515 ORTHO05D006013 2.1e-06 55.1 62 41.9
FAN01G2906 Fragaria x ananassa HOM05D004515 ORTHO05D006013 2.1e-06 55.1 62 41.9
FAN06G0292 Fragaria x ananassa HOM05D004515 ORTHO05D006013 2.1e-06 55.1 62 41.9
FAN06G4539 Fragaria x ananassa HOM05D004515 ORTHO05D006013 2.1e-06 55.1 62 41.9
FAN10G4299 Fragaria x ananassa HOM05D000946 ORTHO05D006013 2.1e-06 55.1 62 41.9
Hund13856 Selenicereus undatus HOM05D004515 ORTHO05D006013 2.1e-06 55.1 60 45.0
SGA_v2.0_scaffold44G16693 Striga asiatica HOM05D004515 ORTHO05D006013 2.1e-06 55.1 60 45.0
Atru.chr12.26 Acer truncatum HOM05D004515 ORTHO05D006013 2.7e-06 54.7 60 43.3
Migut.F01384 Erythranthe guttata HOM05D004515 ORTHO05D006013 2.7e-06 54.7 60 43.3
vmacro04089 Vaccinium macrocarpon HOM05D000032 ORTHO05D426626 2.7e-06 54.7 42 57.1
Ah.16g103480 Amaranthus hybridus HOM05D004515 ORTHO05D006013 3.6e-06 54.3 60 43.3
CSS0001103 Camellia sinensis var. sinensis HOM05D004515 ORTHO05D006013 3.6e-06 54.3 60 43.3
Nn2g11487 Nelumbo nucifera HOM05D004515 ORTHO05D006013 3.6e-06 54.3 60 43.3
Oeu005845.1 Olea europaea HOM05D004515 ORTHO05D006013 3.6e-06 54.3 60 43.3
RcHm_v2.0_Chr1g0370101 Rosa chinensis HOM05D004515 ORTHO05D006013 3.6e-06 54.3 62 41.9
SalBow6G5289 Salvia bowleyana HOM05D004515 ORTHO05D006013 3.6e-06 54.3 61 42.6
Eucgr.J00216 Eucalyptus grandis HOM05D004515 ORTHO05D006013 4.7e-06 53.9 58 43.1
Rhsim03G0143400 Rhododendron simsii HOM05D004515 ORTHO05D006013 4.7e-06 53.9 60 43.3
ATR0598G192 Amborella trichopoda HOM05D000290 ORTHO05D006676 6.1e-06 53.5 60 43.3
HanXRQChr08g0222111 Helianthus annuus HOM05D004515 ORTHO05D006013 6.1e-06 53.5 60 41.7
Nitab4.5_0001171g0050 Nicotiana tabacum HOM05D004515 ORTHO05D006013 6.1e-06 53.5 60 43.3
Nitab4.5_0003999g0010 Nicotiana tabacum HOM05D004515 ORTHO05D006013 6.1e-06 53.5 60 43.3
Peaxi162Scf00825g00122 Petunia axillaris HOM05D004515 ORTHO05D006013 6.1e-06 53.5 60 43.3
unitig_747.g21413 Utricularia gibba HOM05D004515 ORTHO05D006013 6.1e-06 53.5 60 45.0
vmacro06973 Vaccinium macrocarpon HOM05D004515 ORTHO05D006013 6.1e-06 53.5 60 41.7
Carub.0004s2225 Capsella rubella HOM05D004515 ORTHO05D006013 7.9e-06 53.1 60 41.7
CDE02G2203 Ceratophyllum demersum HOM05D004515 ORTHO05D006013 7.9e-06 53.1 60 43.3
Hma1.2p1_0703F.1_g206460 Hydrangea macrophylla HOM05D004515 ORTHO05D006013 7.9e-06 53.1 60 41.7
MD07G1221400 Malus domestica HOM05D004515 ORTHO05D006013 7.9e-06 53.1 62 40.3
Manes.10G013300 Manihot esculenta HOM05D004515 ORTHO05D006013 7.9e-06 53.1 60 41.7
Oeu025167.1 Olea europaea HOM05D004515 ORTHO05D006013 7.9e-06 53.1 60 41.7
PRCOL_00005788 Prasinoderma coloniale HOM05D000290 ORTHO05D006676 7.9e-06 53.1 64 42.2
PGR044G1178 Punica granatum HOM05D004515 ORTHO05D006013 7.9e-06 53.1 61 42.6


User provided reference genes

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