Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G32494 Trifolium pratense HOM05D006236 ORTHO05D003486 5.3e-193 677.9 456 100.0
Psat0s1315g0200 Pisum sativum HOM05D006236 ORTHO05D003486 1.2e-85 321.2 473 59.2
TPR.G24496 Trifolium pratense HOM05D006236 ORTHO05D003486 1.6e-80 304.3 365 79.5
Medtr1g026790 Medicago truncatula HOM05D006236 ORTHO05D003486 5.8e-75 285.8 244 60.7
Medtr2g010820 Medicago truncatula HOM05D006236 ORTHO05D003486 1.5e-67 261.2 546 46.7
Medtr1g026810 Medicago truncatula HOM05D006236 ORTHO05D003486 8.7e-55 218.8 510 42.7
Ca_12735_v3 Cicer arietinum L. HOM05D006236 ORTHO05D003486 1.1e-54 218.4 438 42.7
Ca_12741_v3 Cicer arietinum L. HOM05D006236 ORTHO05D003486 1.1e-54 218.4 438 42.7
Medtr1g026800 Medicago truncatula HOM05D006236 ORTHO05D003486 1.1e-49 201.8 518 35.1
TPR.G24541 Trifolium pratense HOM05D006236 ORTHO05D003486 5.5e-49 199.5 544 39.2
Glyma.13G034700 Glycine max HOM05D006236 ORTHO05D003486 3.9e-47 193.4 485 32.8
Lalb_Chr04g0253561 Lupinus albus HOM05D006236 ORTHO05D003486 2.5e-46 190.7 222 50.5
Phvul.001G067500 Phaseolus vulgaris HOM05D006236 ORTHO05D003486 9.7e-46 188.7 175 55.4
Lj1g0007441 Lotus japonicus HOM05D006236 ORTHO05D003486 6.3e-45 186.0 485 35.5
Glyma.14G156000 Glycine max HOM05D006236 ORTHO05D003486 8.2e-45 185.7 225 46.7
arahy.Tifrunner.gnm1.ann1.710PNE Arachis hypogaea HOM05D006236 ORTHO05D003486 1.7e-34 151.4 214 44.4
TPR.G28151 Trifolium pratense HOM05D006236 ORTHO05D003486 6.5e-34 149.4 188 46.3
arahy.Tifrunner.gnm1.ann1.BNP26P Arachis hypogaea HOM05D006236 ORTHO05D003486 9.4e-33 145.6 246 41.1
CiPaw.03G184300 Carya illinoinensis HOM05D006236 ORTHO05D003486 1.9e-25 121.3 171 41.5
Gohir.D02G077800 Gossypium hirsutum HOM05D006236 ORTHO05D003486 3.3e-22 110.5 160 38.8
Thecc.08G133800 Theobroma cacao HOM05D006236 ORTHO05D003486 3.7e-21 107.1 184 35.9
TPR.G39827 Trifolium pratense HOM05D006236 ORTHO05D003486 1.8e-20 104.8 104 58.7
Dinv14700 Davidia involucrata HOM05D006236 ORTHO05D003486 4.1e-20 103.6 172 34.9
Sed0000792 Sechium edule HOM05D006236 ORTHO05D003486 4.1e-20 103.6 168 36.9
GSVIVG01008800001 Vitis vinifera HOM05D006236 ORTHO05D003486 7.0e-20 102.8 169 36.1
CsaV3_7G022170 Cucumis sativus L. HOM05D006236 ORTHO05D003486 1.6e-19 101.7 165 33.3
TAR625G0695 Trochodendron aralioides HOM05D006236 ORTHO05D003486 2.0e-19 101.3 106 47.2
AL1G34710 Arabidopsis lyrata HOM05D012602 ORTHO05D003486 4.5e-19 100.1 193 35.2
Manes.02G169100 Manihot esculenta HOM05D006236 ORTHO05D003486 7.7e-19 99.4 167 35.3
PGR044G2319 Punica granatum HOM05D006236 ORTHO05D003486 1.0e-18 99.0 166 34.3
ClCG09G021830 Citrullus lanatus HOM05D006236 ORTHO05D003486 1.7e-18 98.2 198 31.3
DCAR_028204 Daucus carota HOM05D006236 ORTHO05D003486 2.9e-18 97.4 169 36.1
TWI60G0548 Tripterygium wilfordii HOM05D006236 ORTHO05D003486 2.9e-18 97.4 168 38.1
Oeu047174.1 Olea europaea HOM05D006236 ORTHO05D003486 5.0e-18 96.7 115 40.9
Potri.002G077500 Populus trichocarpa HOM05D006236 ORTHO05D003486 6.5e-18 96.3 168 35.1
MSTRG.24177 Avicennia marina HOM05D006236 ORTHO05D003486 1.1e-17 95.5 221 30.3
Gorai.005G087400 Gossypium raimondii HOM05D006236 ORTHO05D003486 4.2e-17 93.6 140 39.3
Sabra02G0060900 Salix brachista HOM05D006236 ORTHO05D003486 4.2e-17 93.6 168 33.9
Haze_03510 Corylus avellana HOM05D006236 ORTHO05D003486 5.5e-17 93.2 122 42.6
Nn5g28446 Nelumbo nucifera HOM05D006236 ORTHO05D003486 7.2e-17 92.8 140 35.7
CiPaw.11G076600 Carya illinoinensis HOM05D006236 ORTHO05D003486 9.4e-17 92.4 125 40.0
QL12p002389 Quercus lobata HOM05D006236 ORTHO05D003486 9.4e-17 92.4 110 42.7
Sed0021928 Sechium edule HOM05D006236 ORTHO05D003486 1.6e-16 91.7 192 29.7
THA.LOC104812078 Tarenaya hassleriana HOM05D006236 ORTHO05D003486 1.6e-16 91.7 240 29.2
SGA_v2.0_scaffold28G11968 Striga asiatica HOM05D006236 ORTHO05D003486 2.1e-16 91.3 231 29.4
Dinv27264 Davidia involucrata HOM05D006236 ORTHO05D003486 2.7e-16 90.9 152 36.8
Medtr1g026760 Medicago truncatula HOM05D006236 ORTHO05D003486 2.7e-16 90.9 100 49.0
SalBow2G2217 Salvia bowleyana HOM05D006236 ORTHO05D003486 2.7e-16 90.9 133 36.8
BraA01t04367Z Brassica rapa HOM05D009282 ORTHO05D003486 6.1e-16 89.7 165 35.8
Atru.chr13.1589 Acer truncatum HOM05D006236 ORTHO05D003486 8.0e-16 89.4 147 39.5
Migut.N03258 Erythranthe guttata HOM05D006236 ORTHO05D003486 1.0e-15 89.0 139 36.7
Aa31LG7G5540 Aethionema arabicum HOM05D012602 ORTHO05D003486 1.4e-15 88.6 179 33.0
Gohir.A02G070600 Gossypium hirsutum HOM05D006236 ORTHO05D003486 2.3e-15 87.8 160 34.4
SpUn0522_0010 Schrenkiella parvula HOM05D009282 ORTHO05D003486 4.0e-15 87.0 154 34.4
BolC1t05537H Brassica oleracea HOM05D009282 ORTHO05D003486 5.2e-15 86.7 163 33.7
Peaxi162Scf00234g00718 Petunia axillaris HOM05D012804 ORTHO05D003486 6.8e-15 86.3 109 36.7
Sp3g06660 Schrenkiella parvula HOM05D009282 ORTHO05D003486 6.8e-15 86.3 154 35.1
Ciclev10000428m.g Citrus clementina HOM05D006236 ORTHO05D003486 8.8e-15 85.9 172 33.7
Glyma.04G206551 Glycine max HOM05D006236 ORTHO05D003486 8.8e-15 85.9 107 41.1
Manes.18G083050 Manihot esculenta HOM05D006236 ORTHO05D003486 1.2e-14 85.5 107 43.0
Thhalv10007934m.g Eutrema salsugineum HOM05D012602 ORTHO05D003486 1.5e-14 85.1 169 32.5
Carub.0003s0731 Capsella rubella HOM05D009282 ORTHO05D003486 2.0e-14 84.7 151 34.4
CARHR021930 Cardamine hirsuta HOM05D012602 ORTHO05D003486 2.0e-14 84.7 221 29.9
Glyma.06G159000 Glycine max HOM05D006236 ORTHO05D003486 2.6e-14 84.3 107 41.1
Nitab4.5_0000205g0060 Nicotiana tabacum HOM05D012804 ORTHO05D003486 2.6e-14 84.3 106 35.8
Thhalv10020550m.g Eutrema salsugineum HOM05D009282 ORTHO05D003486 3.4e-14 84.0 139 36.0
Prupe.1G488800 Prunus persica HOM05D006236 ORTHO05D003486 4.4e-14 83.6 110 40.0
CAN.G1187.8 Capsicum annuum HOM05D012804 ORTHO05D003486 5.7e-14 83.2 193 27.5
Cfa012635 Carpinus fangiana HOM05D006236 ORTHO05D003486 5.7e-14 83.2 113 38.1
FAN20G3074 Fragaria x ananassa HOM05D006236 ORTHO05D003486 7.5e-14 82.8 174 36.2
QL09p032233 Quercus lobata HOM05D006236 ORTHO05D003486 7.5e-14 82.8 146 36.3
RcHm_v2.0_Chr6g0296811 Rosa chinensis HOM05D006236 ORTHO05D003486 7.5e-14 82.8 167 35.9
C05p59590 Brassica napus HOM05D009282 ORTHO05D003486 9.8e-14 82.4 166 32.5
Duzib093G1452 Durio zibethinus HOM05D006236 ORTHO05D003486 9.8e-14 82.4 209 29.7
FAN15G3020 Fragaria x ananassa HOM05D006236 ORTHO05D003486 9.8e-14 82.4 167 34.1
Oeu016130.1 Olea europaea HOM05D006236 ORTHO05D003486 9.8e-14 82.4 151 33.8
BcaC05g29566 Brassica carinata HOM05D009282 ORTHO05D003486 1.7e-13 81.6 177 32.8
A05p40490 Brassica napus HOM05D009282 ORTHO05D003486 1.7e-13 81.6 139 36.0
BraA05t22782Z Brassica rapa HOM05D009282 ORTHO05D003486 1.7e-13 81.6 139 36.0
Nitab4.5_0011766g0010 Nicotiana tabacum HOM05D012804 ORTHO05D003486 2.2e-13 81.3 111 35.1
Eucgr.E01002 Eucalyptus grandis HOM05D006236 ORTHO05D003486 2.8e-13 80.9 161 30.4
AT1G77270 Arabidopsis thaliana HOM05D009282 ORTHO05D003486 3.7e-13 80.5 158 33.5
Lalb_Chr08g0237871 Lupinus albus HOM05D006236 ORTHO05D003486 3.7e-13 80.5 119 38.7
Actinidia15208 Actinidia chinensis HOM05D006236 ORTHO05D003486 4.8e-13 80.1 111 40.5
FvH4_2g27990 Fragaria vesca HOM05D006236 ORTHO05D003486 4.8e-13 80.1 112 42.0
Phvul.009G156700 Phaseolus vulgaris HOM05D006236 ORTHO05D003486 4.8e-13 80.1 109 40.4
AT4G01170 Arabidopsis thaliana HOM05D009282 ORTHO05D003486 6.3e-13 79.7 186 33.9
BcaB05g25029 Brassica carinata HOM05D009282 ORTHO05D003486 6.3e-13 79.7 157 31.8
Sp5g32440 Schrenkiella parvula HOM05D009282 ORTHO05D003486 6.3e-13 79.7 220 32.7
BraA02t07136Z Brassica rapa HOM05D009282 ORTHO05D003486 1.1e-12 79.0 249 27.3
COL.COLO4_33391 Corchorus olitorius HOM05D006236 ORTHO05D003486 1.1e-12 79.0 221 32.1
Thhalv10018476m.g Eutrema salsugineum HOM05D009282 ORTHO05D003486 1.4e-12 78.6 168 32.1
Carub.0002s2415 Capsella rubella HOM05D009282 ORTHO05D003486 1.8e-12 78.2 166 32.5
CARHR082440 Cardamine hirsuta HOM05D009282 ORTHO05D003486 1.8e-12 78.2 206 30.1
Nitab4.5_0001925g0210 Nicotiana tabacum HOM05D012804 ORTHO05D003486 2.4e-12 77.8 111 33.3
Cfa010576 Carpinus fangiana HOM05D006236 ORTHO05D003486 3.1e-12 77.4 103 40.8
A06p17650 Brassica napus HOM05D012602 ORTHO05D003486 4.1e-12 77.0 141 33.3
BraA06t24857Z Brassica rapa HOM05D012602 ORTHO05D003486 4.1e-12 77.0 141 33.3
BolC5t34614H Brassica oleracea HOM05D009282 ORTHO05D003486 5.4e-12 76.6 139 34.5
RcHm_v2.0_Chr6g0296801 Rosa chinensis HOM05D006236 ORTHO05D003486 5.4e-12 76.6 237 28.7
MD15G1133200 Malus domestica HOM05D006236 ORTHO05D003486 7.0e-12 76.3 109 34.9
AT3G07730 Arabidopsis thaliana HOM05D009282 ORTHO05D003486 1.2e-11 75.5 186 34.9
BcaB04g21273 Brassica carinata HOM05D009282 ORTHO05D003486 1.2e-11 75.5 137 32.8
Peaxi162Scf00062g00089 Petunia axillaris HOM05D012804 ORTHO05D003486 1.2e-11 75.5 109 33.9
C02p34410 Brassica napus HOM05D009282 ORTHO05D003486 1.6e-11 75.1 238 27.3
BcaC03g15725 Brassica carinata HOM05D009282 ORTHO05D003486 2.0e-11 74.7 238 27.3
FAN02G2378 Fragaria x ananassa HOM05D006236 ORTHO05D003486 2.0e-11 74.7 175 34.9
PGSC0003DMG400004651 Solanum tuberosum HOM05D012804 ORTHO05D003486 2.0e-11 74.7 109 33.9
CARHR070750 Cardamine hirsuta HOM05D009282 ORTHO05D003486 2.7e-11 74.3 173 31.2
Aa31LG4G7280 Aethionema arabicum HOM05D009282 ORTHO05D003486 4.5e-11 73.6 158 31.0
BolC2t09471H Brassica oleracea HOM05D009282 ORTHO05D003486 4.5e-11 73.6 230 27.0
VMungo1309G0219 Vigna mungo HOM05D006236 ORTHO05D003486 4.5e-11 73.6 107 38.3
AL2G37450 Arabidopsis lyrata HOM05D009282 ORTHO05D003486 5.9e-11 73.2 158 32.3
AL3G19090 Arabidopsis lyrata HOM05D009282 ORTHO05D003486 5.9e-11 73.2 233 30.0
BcaC05g26073 Brassica carinata HOM05D012602 ORTHO05D003486 5.9e-11 73.2 139 32.4
A02p21190 Brassica napus HOM05D009282 ORTHO05D003486 5.9e-11 73.2 238 27.3
CAN.G484.6 Capsicum annuum HOM05D012804 ORTHO05D003486 5.9e-11 73.2 109 35.8
C05p20560 Brassica napus HOM05D012602 ORTHO05D003486 7.7e-11 72.8 139 32.4
BolC5t30754H Brassica oleracea HOM05D012602 ORTHO05D003486 7.7e-11 72.8 139 32.4
ATR0824G107 Amborella trichopoda HOM05D049392 ORTHO05D003486 1.0e-10 72.4 103 41.7
Os04g0221000 Oryza sativa ssp. japonica HOM05D006236 ORTHO05D003486 1.0e-10 72.4 104 39.4
PSO170G0742 Papaver somniferum HOM05D020877 ORTHO05D003486 1.0e-10 72.4 108 38.0
CDE02G3425 Ceratophyllum demersum HOM05D006236 ORTHO05D003486 1.3e-10 72.0 99 40.4
FAN15G0899 Fragaria x ananassa HOM05D006236 ORTHO05D003486 1.3e-10 72.0 105 36.2
Solyc11g072250.2 Solanum lycopersicum HOM05D012804 ORTHO05D003486 1.3e-10 72.0 109 31.2
Sopen11g029920 Solanum pennellii HOM05D012804 ORTHO05D003486 1.3e-10 72.0 109 31.2
CANSAT78G0622 Cannabis sativa HOM05D006236 ORTHO05D003486 1.7e-10 71.6 109 33.9
Hund17351 Selenicereus undatus HOM05D031599 ORTHO05D003486 1.7e-10 71.6 100 37.0
Solyc12g099920.2 Solanum lycopersicum HOM05D012804 ORTHO05D003486 1.7e-10 71.6 109 32.1
Sopen12g034540 Solanum pennellii HOM05D012804 ORTHO05D003486 1.7e-10 71.6 109 33.0
RcHm_v2.0_Chr6g0296791 Rosa chinensis HOM05D006236 ORTHO05D003486 2.3e-10 71.2 109 30.3
SalBow7G0481 Salvia bowleyana HOM05D006236 ORTHO05D003486 2.9e-10 70.9 126 28.6
MELO3C012710.2 Cucumis melo HOM05D006236 ORTHO05D003486 3.8e-10 70.5 147 31.3
Oeu042695.1 Olea europaea HOM05D006236 ORTHO05D003486 3.8e-10 70.5 98 37.8
PSO528G0080 Papaver somniferum HOM05D020877 ORTHO05D003486 3.8e-10 70.5 110 36.4
SalBow7G2443 Salvia bowleyana HOM05D006236 ORTHO05D003486 3.8e-10 70.5 122 28.7
FvH4_2g27980 Fragaria vesca HOM05D006236 ORTHO05D003486 5.0e-10 70.1 253 28.5
Os05g0423200 Oryza sativa ssp. japonica HOM05D006236 ORTHO05D003486 5.0e-10 70.1 214 28.5
Psat5g058120 Pisum sativum HOM05D006236 ORTHO05D003486 6.6e-10 69.7 119 36.1
THA.LOC104813683 Tarenaya hassleriana HOM05D009282 ORTHO05D003486 6.6e-10 69.7 253 26.1
FAN24G2475 Fragaria x ananassa HOM05D006236 ORTHO05D003486 2.5e-09 67.8 101 35.6
MD08G1159900 Malus domestica HOM05D006236 ORTHO05D003486 2.5e-09 67.8 115 36.5
Ca_17011_v3 Cicer arietinum L. HOM05D006236 ORTHO05D003486 4.2e-09 67.0 115 32.2
Prupe.3G258400 Prunus persica HOM05D006236 ORTHO05D003486 5.5e-09 66.6 109 33.0
Solyc04g057970.3 Solanum lycopersicum HOM05D020480 ORTHO05D003486 7.2e-09 66.2 110 30.9
Sopen04g025830 Solanum pennellii HOM05D020480 ORTHO05D003486 7.2e-09 66.2 110 30.9
Gorai.005G087300 Gossypium raimondii HOM05D006236 ORTHO05D003486 9.5e-09 65.9 160 28.8
SMO147G0016 Selaginella moellendorffii HOM05D006236 ORTHO05D003486 9.5e-09 65.9 107 33.6
HPP92_008975 Vanilla planifolia HOM05D006236 ORTHO05D003486 9.5e-09 65.9 110 31.8
PSO528G0025 Papaver somniferum HOM05D020877 ORTHO05D003486 1.2e-08 65.5 160 28.1
Nitab4.5_0003471g0060 Nicotiana tabacum HOM05D012804 ORTHO05D003486 2.1e-08 64.7 111 32.4
FAN27G1104 Fragaria x ananassa HOM05D006236 ORTHO05D003486 2.8e-08 64.3 123 31.7
TPR.G28699 Trifolium pratense HOM05D006236 ORTHO05D003486 2.8e-08 64.3 100 35.0
CANSAT78G1984 Cannabis sativa HOM05D006236 ORTHO05D003486 6.1e-08 63.2 109 32.1
SMO196G0029 Selaginella moellendorffii HOM05D002377 ORTHO05D003486 6.1e-08 63.2 99 34.3
Os04g0539100 Oryza sativa ssp. japonica HOM05D006236 ORTHO05D003486 8.0e-08 62.8 103 33.0
SGA_v2.0_scaffold52G18912 Striga asiatica HOM05D006236 ORTHO05D003486 8.0e-08 62.8 200 26.0
Zm00001eb075330 Zea mays HOM05D006236 ORTHO05D003486 8.0e-08 62.8 108 33.3
AagrBONN_evm.TU.Sc2ySwM_228.1542 Anthoceros agrestis HOM05D002377 ORTHO05D003486 1.0e-07 62.4 100 41.0
arahy.Tifrunner.gnm1.ann1.0TWQ75 Arachis hypogaea HOM05D024686 ORTHO05D003486 2.3e-07 61.2 121 32.2
arahy.Tifrunner.gnm1.ann1.E8STVK Arachis hypogaea HOM05D024686 ORTHO05D003486 2.3e-07 61.2 121 32.2
Gohir.D02G077700 Gossypium hirsutum HOM05D006236 ORTHO05D003486 2.3e-07 61.2 141 29.8
Zm00001eb385310 Zea mays HOM05D006236 ORTHO05D003486 2.3e-07 61.2 176 30.7
CANSAT25G1833 Cannabis sativa HOM05D006236 ORTHO05D003486 4.0e-07 60.5 195 25.6
CANSAT78G2054 Cannabis sativa HOM05D006236 ORTHO05D003486 4.0e-07 60.5 240 24.6
Lj7E351T3 Lonicera japonica HOM05D006236 ORTHO05D003486 4.0e-07 60.5 72 33.3
MSTRG.25355 Avicennia marina HOM05D006236 ORTHO05D003486 5.2e-07 60.1 235 21.7
Rhsim11G0072200 Rhododendron simsii HOM05D029276 ORTHO05D003486 5.2e-07 60.1 128 35.9
SEGI_21165 Sequoiadendron giganteum HOM05D029892 ORTHO05D003486 5.2e-07 60.1 99 35.4
Migut.C01072 Erythranthe guttata HOM05D006236 ORTHO05D003486 6.8e-07 59.7 132 27.3
Mapoly0015s0190 Marchantia polymorpha HOM05D006236 ORTHO05D003486 6.8e-07 59.7 106 38.7
Ciclev10003901m.g Citrus clementina HOM05D006236 ORTHO05D003486 8.9e-07 59.3 164 30.5
FAN27G0089 Fragaria x ananassa HOM05D006236 ORTHO05D003486 1.2e-06 58.9 147 32.7
HanXRQChr05g0149711 Helianthus annuus HOM05D006236 ORTHO05D003486 1.5e-06 58.5 211 26.1
arahy.Tifrunner.gnm1.ann1.JAMD1N Arachis hypogaea HOM05D024686 ORTHO05D003486 2.0e-06 58.2 121 30.6
Lsat_1_v5_gn_6_110341 Lactuca sativa HOM05D006236 ORTHO05D003486 2.0e-06 58.2 111 33.3
arahy.Tifrunner.gnm1.ann1.Y133Z2 Arachis hypogaea HOM05D024686 ORTHO05D003486 2.6e-06 57.8 121 30.6
unitig_899.g14422 Utricularia gibba HOM05D006236 ORTHO05D003486 2.6e-06 57.8 82 40.2


User provided reference genes

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