Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G32483 Trifolium pratense HOM05D000651 ORTHO05D003990 1.9e-30 135.2 67 100.0
TPR.G19130 Trifolium pratense HOM05D000651 ORTHO05D003990 8.7e-28 126.3 67 94.0
TPR.G29102 Trifolium pratense HOM05D000651 ORTHO05D003990 6.4e-23 110.2 66 80.3
TPR.G19120 Trifolium pratense HOM05D000651 ORTHO05D003990 4.8e-18 94.0 66 72.7
TPR.G32510 Trifolium pratense HOM05D000651 ORTHO05D003990 1.4e-17 92.4 66 71.2
Ca_08976_v3 Cicer arietinum L. HOM05D000651 ORTHO05D003990 1.1e-14 82.8 63 68.3
Ca_26223_v3 Cicer arietinum L. HOM05D000651 ORTHO05D003990 3.5e-13 77.8 63 63.5
Medtr1g048840 Medicago truncatula HOM05D000651 ORTHO05D003990 7.9e-13 76.6 63 66.7
Medtr4g019680 Medicago truncatula HOM05D000651 ORTHO05D003990 1.0e-12 76.3 62 61.3
Medtr7g106530 Medicago truncatula HOM05D000651 ORTHO05D003990 1.0e-12 76.3 62 62.9
Glyma.09G108100 Glycine max HOM05D000651 ORTHO05D003990 8.7e-12 73.2 63 63.5
TPR.G31286 Trifolium pratense HOM05D000651 ORTHO05D003990 1.1e-11 72.8 67 58.2
Medtr4g084700 Medicago truncatula HOM05D000651 ORTHO05D003990 1.4e-09 65.9 62 53.2
Ca_18736_v3 Cicer arietinum L. HOM05D000651 ORTHO05D003990 1.8e-09 65.5 62 58.1
Lalb_Chr05g0219531 Lupinus albus HOM05D000651 ORTHO05D003990 4.0e-09 64.3 62 56.5
VMungo0251G2258 Vigna mungo HOM05D000651 ORTHO05D003990 4.0e-09 64.3 67 52.2
Lj4g0023305 Lotus japonicus HOM05D000651 ORTHO05D003990 6.9e-09 63.5 63 54.0
TPR.G38350 Trifolium pratense HOM05D000651 ORTHO05D003990 6.9e-09 63.5 62 53.2
MELO3C005307.2 Cucumis melo HOM05D021888 ORTHO05D003990 1.5e-08 62.4 67 52.2
Phvul.002G094900 Phaseolus vulgaris HOM05D000651 ORTHO05D003990 2.6e-08 61.6 67 50.7
Psat7g128680 Pisum sativum HOM05D000651 ORTHO05D003990 2.6e-08 61.6 62 51.6
CSS0042175 Camellia sinensis var. sinensis HOM05D000651 ORTHO05D003990 3.4e-08 61.2 54 57.4
Actinidia14976 Actinidia chinensis HOM05D000651 ORTHO05D003990 4.5e-08 60.8 54 55.6
Dinv07655 Davidia involucrata HOM05D000651 ORTHO05D003990 4.5e-08 60.8 54 55.6
arahy.Tifrunner.gnm1.ann1.34Z3BG Arachis hypogaea HOM05D000651 ORTHO05D003990 5.8e-08 60.5 63 54.0
arahy.Tifrunner.gnm1.ann1.RG7NZB Arachis hypogaea HOM05D000651 ORTHO05D003990 5.8e-08 60.5 63 54.0
arahy.Tifrunner.gnm1.ann1.ZQQT14 Arachis hypogaea HOM05D000651 ORTHO05D003990 5.8e-08 60.5 63 54.0
CSS0022216 Camellia sinensis var. sinensis HOM05D000651 ORTHO05D003990 7.6e-08 60.1 54 55.6
Cc11_g08580 Coffea canephora HOM05D000651 ORTHO05D003990 7.6e-08 60.1 62 51.6
CSS0040679 Camellia sinensis var. sinensis HOM05D000651 ORTHO05D003990 1.0e-07 59.7 54 55.6
Duzib251G0891 Durio zibethinus HOM05D000651 ORTHO05D003990 1.0e-07 59.7 54 55.6
Migut.E00431 Erythranthe guttata HOM05D000651 ORTHO05D003990 1.0e-07 59.7 63 44.4
MD13G1024700 Malus domestica HOM05D000651 ORTHO05D003990 1.0e-07 59.7 61 54.1
Oeu003381.1 Olea europaea HOM05D000651 ORTHO05D003990 1.0e-07 59.7 62 48.4
arahy.Tifrunner.gnm1.ann1.58UXC0 Arachis hypogaea HOM05D000651 ORTHO05D003990 1.3e-07 59.3 63 52.4
Haze_20167 Corylus avellana HOM05D015316 ORTHO05D003990 1.3e-07 59.3 67 47.8
Cfa020037 Carpinus fangiana HOM05D015316 ORTHO05D003990 1.7e-07 58.9 67 47.8
FAN22G1281 Fragaria x ananassa HOM05D000137 ORTHO05D000503 1.7e-07 58.9 63 52.4
CSS0020544 Camellia sinensis var. sinensis HOM05D000651 ORTHO05D003990 2.2e-07 58.5 54 55.6
unitig_0.g2324 Utricularia gibba HOM05D000651 ORTHO05D003990 2.2e-07 58.5 66 43.9
Eucgr.J02425 Eucalyptus grandis HOM05D000651 ORTHO05D003990 2.9e-07 58.2 65 47.7
arahy.Tifrunner.gnm1.ann1.7T6UUP Arachis hypogaea HOM05D000651 ORTHO05D003435 3.8e-07 57.8 66 48.5
EL10Ac1g00119 Beta vulgaris HOM05D000294 ORTHO05D003990 3.8e-07 57.8 53 52.8
FvH4_4g32502 Fragaria vesca HOM05D000651 ORTHO05D003990 3.8e-07 57.8 63 50.8
FAN12G2732 Fragaria x ananassa HOM05D000651 ORTHO05D003990 3.8e-07 57.8 63 50.8
Prupe.1G325800 Prunus persica HOM05D021888 ORTHO05D003990 3.8e-07 57.8 59 54.2
CsaV3_5G028450 Cucumis sativus L. HOM05D021888 ORTHO05D003990 6.5e-07 57.0 67 47.8
Dinv14425 Davidia involucrata HOM05D008822 ORTHO05D003990 6.5e-07 57.0 54 53.7
Duzib248G1110 Durio zibethinus HOM05D000651 ORTHO05D003990 6.5e-07 57.0 54 53.7
Nitab4.5_0007359g0040 Nicotiana tabacum HOM05D000651 ORTHO05D003990 6.5e-07 57.0 64 50.0
TWI31G1292 Tripterygium wilfordii HOM05D000651 ORTHO05D003990 6.5e-07 57.0 63 50.8
ClCG01G006200 Citrullus lanatus HOM05D021888 ORTHO05D003990 8.4e-07 56.6 66 48.5
Nitab4.5_0007504g0010 Nicotiana tabacum HOM05D000651 ORTHO05D003990 1.1e-06 56.2 64 46.9
Peaxi162Scf00047g00334 Petunia axillaris HOM05D000651 ORTHO05D003990 1.1e-06 56.2 62 45.2
Peaxi162Scf00253g01127 Petunia axillaris HOM05D000651 ORTHO05D003990 1.1e-06 56.2 62 45.2
Solyc04g007720.3 Solanum lycopersicum HOM05D000651 ORTHO05D003990 1.1e-06 56.2 62 45.2
RcHm_v2.0_Chr7g0206321 Rosa chinensis HOM05D015272 ORTHO05D022694 1.4e-06 55.8 54 53.7
PGSC0003DMG402005954 Solanum tuberosum HOM05D000651 ORTHO05D003990 1.4e-06 55.8 62 43.5
arahy.Tifrunner.gnm1.ann1.1CZ7RW Arachis hypogaea HOM05D000651 ORTHO05D003990 1.9e-06 55.5 63 49.2
Eucgr.J02424 Eucalyptus grandis HOM05D008822 ORTHO05D003990 1.9e-06 55.5 58 48.3
arahy.Tifrunner.gnm1.ann1.DY9A0E Arachis hypogaea HOM05D000651 ORTHO05D003990 2.5e-06 55.1 63 49.2
CAN.G698.4 Capsicum annuum HOM05D000651 ORTHO05D003990 2.5e-06 55.1 67 41.8
HanXRQChr15g0476841 Helianthus annuus HOM05D008822 ORTHO05D003990 2.5e-06 55.1 62 50.0
Oeu045858.1 Olea europaea HOM05D008822 ORTHO05D003990 2.5e-06 55.1 62 43.5
RcHm_v2.0_Chr4g0441381 Rosa chinensis HOM05D000651 ORTHO05D003990 2.5e-06 55.1 64 51.6
Sed0005667 Sechium edule HOM05D021888 ORTHO05D003990 2.5e-06 55.1 61 49.2
Sopen04g002810 Solanum pennellii HOM05D000651 ORTHO05D003990 2.5e-06 55.1 62 43.5
CSS0033557 Camellia sinensis var. sinensis HOM05D000651 ORTHO05D003990 3.2e-06 54.7 63 47.6
CSS0042277 Camellia sinensis var. sinensis HOM05D000651 ORTHO05D003990 3.2e-06 54.7 63 47.6
Cc11_g08570 Coffea canephora HOM05D000651 ORTHO05D003990 3.2e-06 54.7 62 45.2
Nitab4.5_0000926g0060 Nicotiana tabacum HOM05D000651 ORTHO05D003990 3.2e-06 54.7 54 50.0
Nitab4.5_0004230g0020 Nicotiana tabacum HOM05D000651 ORTHO05D003990 3.2e-06 54.7 54 50.0
Rhsim09G0097300 Rhododendron simsii HOM05D000651 ORTHO05D003990 3.2e-06 54.7 54 51.9
Sc04g0005050 Simmondsia chinensis HOM05D000651 ORTHO05D003990 3.2e-06 54.7 59 50.8
EL10As3g23335 Beta vulgaris HOM05D000294 ORTHO05D000177 4.2e-06 54.3 53 52.8
DCAR_007300 Daucus carota HOM05D002189 ORTHO05D002233 4.2e-06 54.3 64 51.6
Glyma.07G218500 Glycine max HOM05D000651 ORTHO05D003990 4.2e-06 54.3 63 50.8
Ah.04g154370 Amaranthus hybridus HOM05D000294 ORTHO05D003990 5.5e-06 53.9 53 54.7
Nitab4.5_0000426g0240 Nicotiana tabacum HOM05D000651 ORTHO05D003990 5.5e-06 53.9 58 48.3
Rhsim09G0066300 Rhododendron simsii HOM05D000651 ORTHO05D003990 5.5e-06 53.9 53 50.9
SGA_v2.0_scaffold39G15180 Striga asiatica HOM05D000651 ORTHO05D003990 5.5e-06 53.9 54 46.3
Thecc.02G282500 Theobroma cacao HOM05D000651 ORTHO05D003990 5.5e-06 53.9 63 47.6
Actinidia04066 Actinidia chinensis HOM05D000896 ORTHO05D000594 7.1e-06 53.5 62 48.4
Manes.17G077700 Manihot esculenta HOM05D000651 ORTHO05D003990 7.1e-06 53.5 53 54.7
Sopen10g027670 Solanum pennellii HOM05D000651 ORTHO05D003990 7.1e-06 53.5 54 50.0
COL.COLO4_20494 Corchorus olitorius HOM05D000651 ORTHO05D003990 9.3e-06 53.1 51 54.9
Manes.17G077833 Manihot esculenta HOM05D000651 ORTHO05D003990 9.3e-06 53.1 53 52.8
Prupe.5G053600 Prunus persica HOM05D015272 ORTHO05D003990 9.3e-06 53.1 67 44.8


User provided reference genes

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