Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G32452 Trifolium pratense HOM05D004418 ORTHO05D005222 3.3e-170 601.7 312 100.0
Medtr6g017240 Medicago truncatula HOM05D004418 ORTHO05D005222 6.9e-136 487.6 312 84.3
Psat1g012960 Pisum sativum HOM05D004418 ORTHO05D005222 2.0e-103 379.8 267 79.4
Glyma.13G046900 Glycine max HOM05D004418 ORTHO05D005222 2.3e-99 366.3 323 66.9
Phvul.004G062900 Phaseolus vulgaris HOM05D004418 ORTHO05D005222 3.3e-98 362.5 313 68.1
Glyma.19G045400 Glycine max HOM05D004418 ORTHO05D005222 7.7e-95 351.3 328 64.3
Lalb_Chr06g0174671 Lupinus albus HOM05D004418 ORTHO05D005222 3.2e-93 345.9 304 67.1
Glyma.18G281000 Glycine max HOM05D004418 ORTHO05D005222 1.0e-91 340.9 305 66.2
VMungo0464G1669 Vigna mungo HOM05D004418 ORTHO05D005222 9.8e-90 334.3 317 63.7
arahy.Tifrunner.gnm1.ann1.FZV4HQ Arachis hypogaea HOM05D004418 ORTHO05D005222 3.1e-88 329.3 322 64.3
arahy.Tifrunner.gnm1.ann1.I4UW8B Arachis hypogaea HOM05D004418 ORTHO05D005222 3.1e-88 329.3 322 64.3
Lj2g0026691 Lotus japonicus HOM05D004418 ORTHO05D005222 8.5e-86 321.2 297 67.0
Lj1g0022779 Lotus japonicus HOM05D004418 ORTHO05D005222 3.6e-84 315.8 277 67.1
Phvul.008G020100 Phaseolus vulgaris HOM05D004418 ORTHO05D005222 5.2e-83 312.0 308 60.1
VMungo1383G2014 Vigna mungo HOM05D004418 ORTHO05D005222 3.4e-82 309.3 302 60.3
Glyma.08G256900 Glycine max HOM05D004418 ORTHO05D005222 5.7e-82 308.5 308 61.0
TPR.G4552 Trifolium pratense HOM05D004418 ORTHO05D005222 1.2e-79 300.8 311 62.7
Psat3g190400 Pisum sativum HOM05D004418 ORTHO05D005222 1.5e-77 293.9 290 62.1
Thecc.04G137500 Theobroma cacao HOM05D004418 ORTHO05D005222 1.9e-77 293.5 323 58.8
Prupe.3G239700 Prunus persica HOM05D004418 ORTHO05D005222 4.3e-77 292.4 304 58.9
MD17G1074300 Malus domestica HOM05D004418 ORTHO05D005222 6.1e-76 288.5 307 58.0
MD09G1084800 Malus domestica HOM05D004418 ORTHO05D005222 5.2e-75 285.4 307 57.7
QL02p052558 Quercus lobata HOM05D004418 ORTHO05D005222 1.5e-74 283.9 317 57.7
Lalb_Chr10g0092251 Lupinus albus HOM05D004418 ORTHO05D005222 2.6e-74 283.1 314 58.9
Medtr7g018370 Medicago truncatula HOM05D004418 ORTHO05D005222 1.7e-73 280.4 266 64.3
CiPaw.04G040400 Carya illinoinensis HOM05D004418 ORTHO05D005222 2.9e-73 279.6 308 57.8
Cfa007945 Carpinus fangiana HOM05D004418 ORTHO05D005222 1.2e-71 274.2 305 58.4
RcHm_v2.0_Chr2g0163131 Rosa chinensis HOM05D004418 ORTHO05D005222 1.6e-71 273.9 306 55.6
CiPaw.03G059700 Carya illinoinensis HOM05D004418 ORTHO05D005222 2.7e-71 273.1 299 56.9
Potri.017G112600 Populus trichocarpa HOM05D004418 ORTHO05D005222 5.9e-71 271.9 326 56.1
COL.COLO4_16191 Corchorus olitorius HOM05D004418 ORTHO05D005222 1.7e-70 270.4 257 65.4
Gohir.A07G071400 Gossypium hirsutum HOM05D004418 ORTHO05D005222 6.6e-70 268.5 308 56.5
FAN14G2637 Fragaria x ananassa HOM05D004418 ORTHO05D005222 1.1e-69 267.7 308 54.5
FAN05G3990 Fragaria x ananassa HOM05D004418 ORTHO05D005222 1.9e-69 266.9 306 54.6
FAN02G0751 Fragaria x ananassa HOM05D004418 ORTHO05D005222 9.5e-69 264.6 297 55.2
FvH4_6g45350 Fragaria vesca HOM05D004418 ORTHO05D005222 1.2e-68 264.2 308 53.9
Ciclev10012140m.g Citrus clementina HOM05D004418 ORTHO05D005222 2.8e-68 263.1 343 52.8
Manes.01G108300 Manihot esculenta HOM05D004418 ORTHO05D005222 8.0e-68 261.5 251 62.9
TAR462G0001 Trochodendron aralioides HOM05D004418 ORTHO05D005222 1.0e-67 261.2 311 57.2
Gohir.D07G075900 Gossypium hirsutum HOM05D004418 ORTHO05D005222 4.0e-67 259.2 310 53.2
Sabra04G0078200 Salix brachista HOM05D004418 ORTHO05D005222 5.2e-67 258.8 320 56.9
Potri.004G102200 Populus trichocarpa HOM05D004418 ORTHO05D005222 1.2e-66 257.7 324 54.9
Gorai.001G080100 Gossypium raimondii HOM05D004418 ORTHO05D005222 1.5e-66 257.3 310 52.9
CANSAT64G2567 Cannabis sativa HOM05D004418 ORTHO05D005222 3.4e-66 256.1 255 62.0
Cpa.g.sc179.25 Carica papaya HOM05D004418 ORTHO05D005222 7.5e-66 255.0 318 52.2
Gohir.D11G168666 Gossypium hirsutum HOM05D004418 ORTHO05D005222 3.7e-65 252.7 312 54.2
GSVIVG01036443001 Vitis vinifera HOM05D004418 ORTHO05D005222 1.9e-64 250.4 289 58.1
Actinidia15868 Actinidia chinensis HOM05D004418 ORTHO05D005222 3.2e-64 249.6 230 63.9
Actinidia36309 Actinidia chinensis HOM05D004418 ORTHO05D005222 3.2e-64 249.6 290 55.2
Eucgr.F02480 Eucalyptus grandis HOM05D004418 ORTHO05D005222 5.4e-64 248.8 313 54.0
Sopen02g030440 Solanum pennellii HOM05D004418 ORTHO05D005222 5.4e-64 248.8 326 53.4
Dinv34848 Davidia involucrata HOM05D004418 ORTHO05D005222 9.2e-64 248.1 274 59.5
Nitab4.5_0000628g0180 Nicotiana tabacum HOM05D004418 ORTHO05D005222 1.2e-63 247.7 312 51.0
Gorai.007G180200 Gossypium raimondii HOM05D004418 ORTHO05D005222 1.6e-63 247.3 309 52.1
Haze_14129 Corylus avellana HOM05D004418 ORTHO05D005222 6.0e-63 245.4 272 59.2
Gohir.A11G162400 Gossypium hirsutum HOM05D004418 ORTHO05D005222 6.0e-63 245.4 308 53.6
PGSC0003DMG400024185 Solanum tuberosum HOM05D004418 ORTHO05D005222 6.0e-63 245.4 327 49.5
Sed0007454 Sechium edule HOM05D004418 ORTHO05D005222 7.8e-63 245.0 298 53.7
ClCG11G005360 Citrullus lanatus HOM05D004418 ORTHO05D005222 3.0e-62 243.0 305 54.1
Nitab4.5_0004118g0100 Nicotiana tabacum HOM05D004418 ORTHO05D005222 3.0e-62 243.0 338 49.1
CsaV3_5G039140 Cucumis sativus L. HOM05D004418 ORTHO05D005222 3.9e-62 242.7 299 54.2
CAN.G358.137 Capsicum annuum HOM05D004418 ORTHO05D005222 6.6e-62 241.9 249 59.8
CSS0011812 Camellia sinensis var. sinensis HOM05D004418 ORTHO05D005222 1.1e-61 241.1 267 60.7
Nitab4.5_0008781g0030 Nicotiana tabacum HOM05D004418 ORTHO05D005222 1.5e-61 240.7 307 52.1
Hma1.2p1_0550F.1_g177250 Hydrangea macrophylla HOM05D004418 ORTHO05D005222 2.5e-61 240.0 299 56.2
Cc07_g09010 Coffea canephora HOM05D004418 ORTHO05D005222 3.3e-61 239.6 295 54.9
Nn3g17760 Nelumbo nucifera HOM05D004418 ORTHO05D005222 7.3e-61 238.4 280 57.9
Nn4g23746 Nelumbo nucifera HOM05D004418 ORTHO05D005222 7.3e-61 238.4 314 52.5
Atru.chr8.826 Acer truncatum HOM05D004418 ORTHO05D005222 1.2e-60 237.7 304 54.3
Solyc02g085750.4 Solanum lycopersicum HOM05D004418 ORTHO05D005222 2.1e-60 236.9 316 51.6
Lj2C447G3 Lonicera japonica HOM05D006042 ORTHO05D007658 3.6e-60 236.1 228 62.3
Oeu030758.1 Olea europaea HOM05D004418 ORTHO05D005222 3.6e-60 236.1 224 62.9
Duzib133G1448 Durio zibethinus HOM05D004418 ORTHO05D005222 6.2e-60 235.3 269 58.0
Oeu052993.1 Olea europaea HOM05D004418 ORTHO05D005222 1.1e-59 234.6 233 60.9
Sabra17G0093300 Salix brachista HOM05D004418 ORTHO05D005222 1.4e-59 234.2 273 56.8
ClCG05G012070 Citrullus lanatus HOM05D004418 ORTHO05D005222 1.2e-58 231.1 298 52.0
DCAR_017217 Daucus carota HOM05D004418 ORTHO05D005222 5.8e-58 228.8 306 49.0
Solyc02g063030.4 Solanum lycopersicum HOM05D004418 ORTHO05D005222 5.8e-58 228.8 323 48.3
CsaV3_3G020330 Cucumis sativus L. HOM05D004418 ORTHO05D005222 7.5e-58 228.4 309 48.9
Sopen02g014090 Solanum pennellii HOM05D004418 ORTHO05D005222 7.5e-58 228.4 323 47.7
MELO3C023762.2 Cucumis melo HOM05D004418 ORTHO05D005222 1.7e-57 227.3 309 48.9
arahy.Tifrunner.gnm1.ann1.SB4BUV Arachis hypogaea HOM05D004418 ORTHO05D005222 2.2e-57 226.9 321 49.8
MELO3C022089.2 Cucumis melo HOM05D004418 ORTHO05D005222 4.9e-57 225.7 184 69.0
CAN.G23.16 Capsicum annuum HOM05D004418 ORTHO05D005222 4.1e-56 222.6 341 46.3
MSTRG.23562 Avicennia marina HOM05D004418 ORTHO05D005222 2.1e-55 220.3 309 48.5
Sed0007873 Sechium edule HOM05D004418 ORTHO05D005222 2.1e-55 220.3 302 48.3
Dinv33929 Davidia involucrata HOM05D004418 ORTHO05D005222 1.1e-53 214.5 282 57.4
TWI75G1693 Tripterygium wilfordii HOM05D004418 ORTHO05D005222 1.5e-53 214.2 318 47.5
Ah.10g037550 Amaranthus hybridus HOM05D004418 ORTHO05D005222 1.9e-53 213.8 307 50.5
THA.LOC104803001 Tarenaya hassleriana HOM05D004418 ORTHO05D005222 2.8e-52 209.9 300 47.0
Hund13733 Selenicereus undatus HOM05D004418 ORTHO05D005222 4.7e-52 209.1 154 72.1
Aqoxy3G00366 Aquilegia oxysepala HOM05D004418 ORTHO05D005222 8.1e-52 208.4 291 50.9
HanXRQChr12g0376561 Helianthus annuus HOM05D004418 ORTHO05D005222 1.4e-51 207.6 298 51.0
CSS0030087 Camellia sinensis var. sinensis HOM05D004418 ORTHO05D005222 5.2e-51 205.7 340 47.9
EL10Ac2g04606 Beta vulgaris HOM05D004418 ORTHO05D005222 6.8e-51 205.3 322 46.0
Nitab4.5_0007207g0030 Nicotiana tabacum HOM05D004418 ORTHO05D005222 8.9e-51 204.9 246 51.6
Aqoxy3G03921 Aquilegia oxysepala HOM05D004418 ORTHO05D005222 1.2e-50 204.5 328 44.8
TAR278G0004 Trochodendron aralioides HOM05D004418 ORTHO05D005222 2.0e-50 203.8 299 50.8
CSS0000095 Camellia sinensis var. sinensis HOM05D004418 ORTHO05D005222 2.6e-50 203.4 211 60.2
PGR042G3608 Punica granatum HOM05D004418 ORTHO05D005222 2.6e-50 203.4 285 48.8
ECA246G2173 Erigeron canadensis HOM05D004418 ORTHO05D005222 4.4e-50 202.6 309 48.9
Peaxi162Scf01327g00136 Petunia axillaris HOM05D004418 ORTHO05D005222 9.9e-50 201.4 293 49.5
Migut.L00303 Erythranthe guttata HOM05D004418 ORTHO05D005222 1.3e-46 191.0 279 48.4
PSO017G3409 Papaver somniferum HOM05D004418 ORTHO05D005222 2.3e-46 190.3 291 45.4
PSO478G2162 Papaver somniferum HOM05D004418 ORTHO05D005222 2.5e-45 186.8 291 45.0
Thhalv10014096m.g Eutrema salsugineum HOM05D004418 ORTHO05D005222 7.3e-45 185.3 313 46.0
AT5G16030 Arabidopsis thaliana HOM05D004418 ORTHO05D005222 2.1e-44 183.7 222 55.0
TWI79G1555 Tripterygium wilfordii HOM05D004418 ORTHO05D005222 2.1e-44 183.7 344 41.3
SGA_v2.0_scaffold33G13429 Striga asiatica HOM05D004418 ORTHO05D005222 1.4e-43 181.0 315 41.9
Aa31LG5G13000 Aethionema arabicum HOM05D004418 ORTHO05D005222 4.0e-43 179.5 248 46.8
MSTRG.3576 Avicennia marina HOM05D004418 ORTHO05D005222 4.0e-43 179.5 321 42.1
Sp6g28100 Schrenkiella parvula HOM05D004418 ORTHO05D005222 1.2e-42 177.9 241 51.5
Peaxi162Scf00501g00012 Petunia axillaris HOM05D004418 ORTHO05D005222 2.0e-42 177.2 330 41.5
AL6G26910 Arabidopsis lyrata HOM05D004418 ORTHO05D005222 2.6e-42 176.8 327 44.0
SalBow5G1629 Salvia bowleyana HOM05D004418 ORTHO05D005222 2.6e-42 176.8 299 43.1
AT3G02500 Arabidopsis thaliana HOM05D004418 ORTHO05D005222 5.8e-42 175.6 290 43.1
A10p23020 Brassica napus HOM05D004418 ORTHO05D005222 3.8e-41 172.9 257 47.5
BraA03t10082Z Brassica rapa HOM05D004418 ORTHO05D005222 3.8e-41 172.9 334 41.0
BraA10t44371Z Brassica rapa HOM05D004418 ORTHO05D005222 3.8e-41 172.9 257 47.5
AL3G11860 Arabidopsis lyrata HOM05D004418 ORTHO05D005222 1.1e-40 171.4 296 43.2
BcaC04g18914 Brassica carinata HOM05D004418 ORTHO05D005222 1.4e-40 171.0 340 40.6
A03p07540 Brassica napus HOM05D004418 ORTHO05D005222 1.4e-40 171.0 324 42.0
Migut.H00200 Erythranthe guttata HOM05D004418 ORTHO05D005222 1.4e-40 171.0 223 52.5
BcaNung02220 Brassica carinata HOM05D004418 ORTHO05D005222 2.4e-40 170.2 220 51.8
Aa31LG11G13580 Aethionema arabicum HOM05D004418 ORTHO05D005222 4.2e-40 169.5 317 43.2
BcaB08g36881 Brassica carinata HOM05D004418 ORTHO05D005222 4.2e-40 169.5 266 47.7
C03p08770 Brassica napus HOM05D004418 ORTHO05D005222 5.4e-40 169.1 324 41.7
Carub.0006s1422 Capsella rubella HOM05D004418 ORTHO05D005222 7.1e-40 168.7 322 42.5
BolC9t58946H Brassica oleracea HOM05D004418 ORTHO05D005222 9.3e-40 168.3 347 39.5
BolC3t13373H Brassica oleracea HOM05D004418 ORTHO05D005222 1.2e-39 167.9 331 41.1
BcaB01g05008 Brassica carinata HOM05D004418 ORTHO05D005222 3.5e-39 166.4 244 48.8
C09p60990 Brassica napus HOM05D004418 ORTHO05D005222 4.6e-39 166.0 347 39.2
CARHR197280 Cardamine hirsuta HOM05D004418 ORTHO05D005222 4.6e-39 166.0 314 44.3
CARHR076500 Cardamine hirsuta HOM05D004418 ORTHO05D005222 1.7e-38 164.1 241 46.5
MBI09_g05206_MAGBIO Magnolia biondii HOM05D004418 ORTHO05D005222 6.6e-38 162.2 308 41.6
Lj4A194T37 Lonicera japonica HOM05D004418 ORTHO05D005222 1.1e-37 161.4 231 52.4
BcaC03g18465 Brassica carinata HOM05D004418 ORTHO05D005222 7.3e-37 158.7 260 46.2
C02p08130 Brassica napus HOM05D004418 ORTHO05D005222 7.3e-37 158.7 260 46.2
PGR004G1179 Punica granatum HOM05D004418 ORTHO05D005222 7.3e-37 158.7 263 45.6
Lsat_1_v5_gn_3_80201 Lactuca sativa HOM05D004418 ORTHO05D005222 4.8e-36 156.0 163 58.3
RcHm_v2.0_Chr4g0404491 Rosa chinensis HOM05D004418 ORTHO05D005222 4.8e-36 156.0 108 73.1
BcaC01g04442 Brassica carinata HOM05D004418 ORTHO05D005222 1.8e-35 154.1 138 61.6
arahy.Tifrunner.gnm1.ann1.554YPX Arachis hypogaea HOM05D004418 ORTHO05D005222 3.1e-35 153.3 313 39.3
A02p03360 Brassica napus HOM05D004418 ORTHO05D005222 4.0e-35 152.9 325 38.5
Oeu052991.1 Olea europaea HOM05D004418 ORTHO05D005222 3.4e-34 149.8 119 68.9
BraA02t05307Z Brassica rapa HOM05D004418 ORTHO05D005222 9.9e-34 148.3 326 38.3
Carub.0003s0161 Capsella rubella HOM05D004418 ORTHO05D005222 1.3e-33 147.9 301 41.2
BolC2t06735H Brassica oleracea HOM05D004418 ORTHO05D005222 2.2e-33 147.1 274 42.7
Ah.16g101950 Amaranthus hybridus HOM05D004418 ORTHO05D005222 2.7e-31 140.2 157 52.2
vmacro05572 Vaccinium macrocarpon HOM05D004418 ORTHO05D005222 1.8e-30 137.5 247 40.5
C03p40110 Brassica napus HOM05D004418 ORTHO05D005222 5.3e-27 125.9 279 37.6
BolC3t16277H Brassica oleracea HOM05D004418 ORTHO05D005222 5.3e-27 125.9 279 37.6
BcaC01g04556 Brassica carinata HOM05D004418 ORTHO05D005222 2.0e-26 124.0 282 38.3
A03p32980 Brassica napus HOM05D004418 ORTHO05D005222 2.0e-26 124.0 284 37.3
BraA03t12466Z Brassica rapa HOM05D004418 ORTHO05D005222 2.0e-26 124.0 282 36.9
SalBow3G2364 Salvia bowleyana HOM05D004418 ORTHO05D005222 4.9e-25 119.4 279 36.9
SalBow3G3548 Salvia bowleyana HOM05D004418 ORTHO05D005222 8.4e-25 118.6 282 36.9
ATR0686G091 Amborella trichopoda HOM05D004418 ORTHO05D005222 1.3e-22 111.3 181 47.0
Sc11g0008220 Simmondsia chinensis HOM05D004418 ORTHO05D005222 5.1e-22 109.4 127 51.2
SGA_v2.0_scaffold49G18089 Striga asiatica HOM05D004418 ORTHO05D005222 1.0e-17 95.1 237 36.3
unitig_32.g11894 Utricularia gibba HOM05D004418 ORTHO05D005222 3.8e-17 93.2 76 64.5
CAN.G144.13 Capsicum annuum HOM05D004418 ORTHO05D005222 1.1e-16 91.7 65 80.0


User provided reference genes

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