Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G32451 Trifolium pratense HOM05D004693 ORTHO05D005545 2.4e-125 452.2 230 100.0
Medtr6g025680 Medicago truncatula HOM05D004693 ORTHO05D005545 3.4e-100 368.6 242 80.6
Medtr6g018550 Medicago truncatula HOM05D004693 ORTHO05D005545 1.0e-99 367.1 242 78.9
Glyma.19G047800 Glycine max HOM05D004693 ORTHO05D005545 1.7e-86 323.2 253 70.4
arahy.Tifrunner.gnm1.ann1.GG98DF Arachis hypogaea HOM05D004693 ORTHO05D005545 1.7e-83 313.2 248 65.3
arahy.Tifrunner.gnm1.ann1.INX0GQ Arachis hypogaea HOM05D004693 ORTHO05D005545 1.7e-83 313.2 248 65.3
TPR.G9726 Trifolium pratense HOM05D004693 ORTHO05D005545 5.2e-80 301.6 246 64.6
Lj1g0002546 Lotus japonicus HOM05D004693 ORTHO05D005545 6.7e-80 301.2 244 63.9
Glyma.18G296600 Glycine max HOM05D004693 ORTHO05D005545 2.0e-79 299.7 245 64.9
Lj2g0008970 Lotus japonicus HOM05D004693 ORTHO05D005545 9.7e-79 297.4 245 65.3
Lalb_Chr21g0317811 Lupinus albus HOM05D004693 ORTHO05D005545 9.7e-79 297.4 247 63.2
Glyma.08G365700 Glycine max HOM05D004693 ORTHO05D005545 2.4e-77 292.7 245 65.3
Medtr7g007280 Medicago truncatula HOM05D004693 ORTHO05D005545 7.0e-77 291.2 240 64.2
Psat3g205360 Pisum sativum HOM05D004693 ORTHO05D005545 9.1e-77 290.8 246 63.0
VMungo1383G0350 Vigna mungo HOM05D004693 ORTHO05D005545 2.0e-76 289.7 252 63.1
Ca_04048_v3 Cicer arietinum L. HOM05D004693 ORTHO05D005545 1.0e-75 287.3 243 63.8
Phvul.008G005900 Phaseolus vulgaris HOM05D004693 ORTHO05D005545 2.5e-74 282.7 252 62.3
GSVIVG01031023001 Vitis vinifera HOM05D004693 ORTHO05D005545 7.2e-74 281.2 248 58.5
Phvul.007G143200 Phaseolus vulgaris HOM05D004693 ORTHO05D005545 4.7e-73 278.5 252 61.9
Lalb_Chr17g0335881 Lupinus albus HOM05D004693 ORTHO05D005545 6.1e-73 278.1 248 60.9
Thecc.04G133900 Theobroma cacao HOM05D004693 ORTHO05D005545 1.0e-72 277.3 244 57.8
Manes.02G068600 Manihot esculenta HOM05D004693 ORTHO05D005545 3.0e-72 275.8 248 57.3
MD00G1132400 Malus domestica HOM05D004693 ORTHO05D005545 1.5e-71 273.5 250 58.0
Prupe.5G053500 Prunus persica HOM05D004693 ORTHO05D005545 1.5e-71 273.5 238 60.1
Gohir.A12G053800 Gossypium hirsutum HOM05D004693 ORTHO05D005545 2.0e-71 273.1 246 57.3
Potri.004G099500 Populus trichocarpa HOM05D004693 ORTHO05D005545 2.0e-71 273.1 247 56.3
MD09G1253000 Malus domestica HOM05D004693 ORTHO05D005545 3.4e-71 272.3 238 58.0
Gorai.008G055600 Gossypium raimondii HOM05D004693 ORTHO05D005545 1.7e-70 270.0 246 56.9
vmacro05556 Vaccinium macrocarpon HOM05D004693 ORTHO05D005545 2.2e-70 269.6 242 58.7
Gohir.D12G052500 Gossypium hirsutum HOM05D004693 ORTHO05D005545 2.8e-70 269.2 246 56.9
RcHm_v2.0_Chr7g0206351 Rosa chinensis HOM05D004693 ORTHO05D005545 4.8e-70 268.5 249 57.4
Sed0027829 Sechium edule HOM05D004693 ORTHO05D005545 8.3e-70 267.7 185 72.4
TWI53G0853 Tripterygium wilfordii HOM05D004693 ORTHO05D005545 1.1e-69 267.3 247 57.9
FvH4_5g20670 Fragaria vesca HOM05D004693 ORTHO05D005545 2.4e-69 266.2 248 55.2
Prupe.3G157500 Prunus persica HOM05D004693 ORTHO05D005545 7.0e-69 264.6 240 57.5
CARHR059530 Cardamine hirsuta HOM05D004693 ORTHO05D005545 1.2e-68 263.8 222 62.2
Actinidia15883 Actinidia chinensis HOM05D004693 ORTHO05D005545 2.7e-68 262.7 237 59.5
Ciclev10012575m.g Citrus clementina HOM05D004693 ORTHO05D005545 2.7e-68 262.7 236 57.6
Hma1.2p1_1109F.1_g257990 Hydrangea macrophylla HOM05D004693 ORTHO05D005545 3.5e-68 262.3 187 67.9
CsaV3_3G020700 Cucumis sativus L. HOM05D004693 ORTHO05D005545 5.9e-68 261.5 185 70.3
Actinidia36320 Actinidia chinensis HOM05D004693 ORTHO05D005545 7.7e-68 261.2 231 60.2
Sabra17G0095200 Salix brachista HOM05D004693 ORTHO05D005545 1.0e-67 260.8 216 59.7
TWI77G0167 Tripterygium wilfordii HOM05D004693 ORTHO05D005545 1.0e-67 260.8 246 56.1
Atru.chr1.1699 Acer truncatum HOM05D004693 ORTHO05D005545 1.3e-67 260.4 233 57.5
ClCG05G011670 Citrullus lanatus HOM05D004693 ORTHO05D005545 1.3e-67 260.4 185 69.7
Psat1g081400 Pisum sativum HOM05D004693 ORTHO05D005545 2.3e-67 259.6 184 76.6
TAR629G3320 Trochodendron aralioides HOM05D004693 ORTHO05D005545 2.9e-67 259.2 203 62.1
PGR004G1354 Punica granatum HOM05D004693 ORTHO05D005545 5.0e-67 258.5 238 57.6
Dinv33946 Davidia involucrata HOM05D004693 ORTHO05D005545 6.6e-67 258.1 194 66.5
CANSAT78G0919 Cannabis sativa HOM05D004693 ORTHO05D005545 8.6e-67 257.7 195 66.2
AT1G67080 Arabidopsis thaliana HOM05D004693 ORTHO05D005545 1.5e-66 256.9 218 60.1
A02p13930 Brassica napus HOM05D004693 ORTHO05D005545 2.5e-66 256.1 229 57.2
BraA02t06454Z Brassica rapa HOM05D004693 ORTHO05D005545 2.5e-66 256.1 229 57.2
BcaC03g14797 Brassica carinata HOM05D004693 ORTHO05D005545 3.3e-66 255.8 232 56.9
C02p22440 Brassica napus HOM05D004693 ORTHO05D005545 3.3e-66 255.8 232 56.9
Sp5g22010 Schrenkiella parvula HOM05D004693 ORTHO05D005545 3.3e-66 255.8 196 63.3
THA.LOC104805567 Tarenaya hassleriana HOM05D004693 ORTHO05D005545 5.5e-66 255.0 242 57.4
BolC2t08398H Brassica oleracea HOM05D004693 ORTHO05D005545 7.2e-66 254.6 232 56.9
MD06G1045700 Malus domestica HOM05D004693 ORTHO05D005545 9.5e-66 254.2 197 62.9
Nn4g23871 Nelumbo nucifera HOM05D004693 ORTHO05D005545 9.5e-66 254.2 187 65.8
Sed0014747 Sechium edule HOM05D004693 ORTHO05D005545 9.5e-66 254.2 184 66.8
Lsat_1_v5_gn_3_79761 Lactuca sativa HOM05D004693 ORTHO05D005545 1.2e-65 253.8 236 56.4
HanXRQChr12g0376541 Helianthus annuus HOM05D004693 ORTHO05D005545 2.1e-65 253.1 237 54.4
Lj2A442G45 Lonicera japonica HOM05D004693 ORTHO05D005545 3.6e-65 252.3 202 59.9
Sed0024744 Sechium edule HOM05D004693 ORTHO05D005545 3.6e-65 252.3 184 66.3
Thhalv10019078m.g Eutrema salsugineum HOM05D004693 ORTHO05D005545 4.7e-65 251.9 234 58.1
TAR371G1203 Trochodendron aralioides HOM05D004693 ORTHO05D005545 4.7e-65 251.9 203 63.1
AL2G25440 Arabidopsis lyrata HOM05D004693 ORTHO05D005545 8.0e-65 251.1 202 62.9
ECA246G3075 Erigeron canadensis HOM05D004693 ORTHO05D005545 1.8e-64 250.0 237 54.4
Eucgr.F02496 Eucalyptus grandis HOM05D004693 ORTHO05D005545 2.3e-64 249.6 244 53.7
BcaB05g24236 Brassica carinata HOM05D004693 ORTHO05D005545 3.0e-64 249.2 187 64.2
FAN13G1234 Fragaria x ananassa HOM05D004693 ORTHO05D005545 4.0e-64 248.8 278 49.3
Carub.0002s1337 Capsella rubella HOM05D004693 ORTHO05D005545 5.2e-64 248.4 186 65.6
DCAR_025914 Daucus carota HOM05D004693 ORTHO05D005545 8.9e-64 247.7 179 65.4
Aa31LG2G3480 Aethionema arabicum HOM05D004693 ORTHO05D005545 2.6e-63 246.1 231 55.8
MSTRG.15294 Avicennia marina HOM05D004693 ORTHO05D005545 3.4e-63 245.7 202 58.4
Nn3g17869 Nelumbo nucifera HOM05D004693 ORTHO05D005545 4.4e-63 245.4 180 66.1
Hund13716 Selenicereus undatus HOM05D004693 ORTHO05D005545 4.4e-63 245.4 177 67.2
QL02p051402 Quercus lobata HOM05D004693 ORTHO05D005545 7.5e-63 244.6 171 69.6
Solyc02g063170.3 Solanum lycopersicum HOM05D004693 ORTHO05D005545 2.2e-62 243.0 229 54.6
Sopen02g014240 Solanum pennellii HOM05D004693 ORTHO05D005545 8.3e-62 241.1 229 54.1
Oeu010266.2 Olea europaea HOM05D004693 ORTHO05D005545 1.8e-61 240.0 176 67.0
PSO478G2919 Papaver somniferum HOM05D004693 ORTHO05D005545 2.4e-61 239.6 199 61.3
PSO017G3734 Papaver somniferum HOM05D004693 ORTHO05D005545 7.0e-61 238.0 199 60.8
Peaxi162Scf00501g00318 Petunia axillaris HOM05D004693 ORTHO05D005545 9.2e-61 237.7 183 61.2
Nitab4.5_0001217g0030 Nicotiana tabacum HOM05D004693 ORTHO05D005545 1.6e-60 236.9 237 50.6
PGSC0003DMG401026407 Solanum tuberosum HOM05D004693 ORTHO05D005545 2.0e-60 236.5 239 51.5
Potri.017G114900 Populus trichocarpa HOM05D004693 ORTHO05D005545 4.5e-60 235.3 215 56.7
PGSC0003DMG400024184 Solanum tuberosum HOM05D004693 ORTHO05D005545 4.5e-60 235.3 230 51.7
ATR1125G077 Amborella trichopoda HOM05D004693 ORTHO05D005545 1.0e-59 234.2 187 62.0
DCAR_017191 Daucus carota HOM05D004693 ORTHO05D005545 1.0e-59 234.2 187 62.0
SGA_v2.0_scaffold115G32108 Striga asiatica HOM05D000286 ORTHO05D000170 1.0e-59 234.2 198 58.6
Ah.16g101760 Amaranthus hybridus HOM05D004693 ORTHO05D005545 2.3e-59 233.0 152 71.7
Sopen02g030740 Solanum pennellii HOM05D004693 ORTHO05D005545 3.9e-59 232.3 195 57.4
AUR62009000 Chenopodium quinoa HOM05D004693 ORTHO05D005545 6.6e-59 231.5 152 70.4
CAN.G225.4 Capsicum annuum HOM05D004693 ORTHO05D005545 8.6e-59 231.1 246 51.2
Solyc02g086050.3 Solanum lycopersicum HOM05D004693 ORTHO05D005545 1.9e-58 229.9 195 56.9
HPP92_021861 Vanilla planifolia HOM05D004693 ORTHO05D005545 2.5e-58 229.6 182 61.0
AUR62023302 Chenopodium quinoa HOM05D004693 ORTHO05D005545 4.3e-58 228.8 159 67.3
MSTRG.23575 Avicennia marina HOM05D004693 ORTHO05D005545 9.5e-58 227.6 229 52.8
Sabra04G0080500 Salix brachista HOM05D004693 ORTHO05D005545 1.6e-57 226.9 239 51.5
VMungo0464G1881 Vigna mungo HOM05D004693 ORTHO05D005545 2.1e-57 226.5 202 64.9
Cc07_g08830 Coffea canephora HOM05D004693 ORTHO05D005545 6.1e-57 224.9 186 60.2
SalBow5G5330 Salvia bowleyana HOM05D004693 ORTHO05D005545 6.1e-57 224.9 199 58.8
Nitab4.5_0004398g0030 Nicotiana tabacum HOM05D004693 ORTHO05D005545 1.4e-56 223.8 222 50.5
Migut.H00217 Erythranthe guttata HOM05D004693 ORTHO05D005545 9.8e-55 217.6 157 66.2
Nitab4.5_0000659g0050 Nicotiana tabacum HOM05D004693 ORTHO05D005545 1.7e-54 216.9 151 67.5
CAN.G625.24 Capsicum annuum HOM05D004693 ORTHO05D005545 3.7e-54 215.7 204 52.9
Migut.L00317 Erythranthe guttata HOM05D004693 ORTHO05D005545 6.4e-54 214.9 142 71.8
Nitab4.5_0000912g0240 Nicotiana tabacum HOM05D004693 ORTHO05D005545 6.4e-54 214.9 155 65.2
COL.COLO4_09328 Corchorus olitorius HOM05D004693 ORTHO05D005545 3.2e-53 212.6 134 71.6
Zm00001eb125470 Zea mays HOM05D004693 ORTHO05D005545 3.2e-53 212.6 159 62.3
unitig_32.g11889 Utricularia gibba HOM05D004693 ORTHO05D005545 5.4e-53 211.8 155 63.9
SalBow3G4509 Salvia bowleyana HOM05D004693 ORTHO05D005545 7.0e-53 211.5 156 64.1
Zm00001eb335080 Zea mays HOM05D004693 ORTHO05D005545 9.2e-53 211.1 145 65.5
MELO3C023805.2 Cucumis melo HOM05D004693 ORTHO05D005545 3.5e-52 209.1 128 78.1
Os01g0128300 Oryza sativa ssp. japonica HOM05D004693 ORTHO05D005545 3.5e-52 209.1 143 68.5
unitig_748.g8751 Utricularia gibba HOM05D004693 ORTHO05D005545 1.9e-50 203.4 142 66.9
Sopen03g007020 Solanum pennellii HOM05D004693 ORTHO05D005545 4.3e-50 202.2 220 48.2
EL10Ac2g04567 Beta vulgaris HOM05D004693 ORTHO05D005545 1.6e-49 200.3 226 50.4
Solyc03g034240.4 Solanum lycopersicum HOM05D004693 ORTHO05D005545 1.6e-49 200.3 222 49.1
PGSC0003DMG402019589 Solanum tuberosum HOM05D004693 ORTHO05D005545 2.1e-49 199.9 223 49.3
SEGI_37456 Sequoiadendron giganteum HOM05D004693 ORTHO05D005545 3.6e-49 199.1 156 57.7
Nitab4.5_0002207g0070 Nicotiana tabacum HOM05D004693 ORTHO05D005545 4.4e-47 192.2 205 49.8
Eucgr.F02495 Eucalyptus grandis HOM05D004693 ORTHO05D005545 5.8e-47 191.8 162 59.3
Aqoxy3G00271 Aquilegia oxysepala HOM05D004693 ORTHO05D005545 3.7e-46 189.1 138 67.4
Duzib133G0419 Durio zibethinus HOM05D004693 ORTHO05D005545 7.0e-45 184.9 246 43.9
Pp3c12_21540 Physcomitrium patens HOM05D004693 ORTHO05D005545 3.9e-43 179.1 160 53.1
Mapoly0134s0007 Marchantia polymorpha HOM05D004693 ORTHO05D005545 6.6e-43 178.3 140 60.7
Pp3c3_37490 Physcomitrium patens HOM05D004693 ORTHO05D005545 9.5e-42 174.5 156 52.6
AagrBONN_evm.TU.Sc2ySwM_362.1317 Anthoceros agrestis HOM05D004693 ORTHO05D005545 2.8e-41 172.9 140 56.4
SMO356G0314 Selaginella moellendorffii HOM05D004693 ORTHO05D005545 3.6e-41 172.6 139 54.7
HPP92_000177 Vanilla planifolia HOM05D004693 ORTHO05D005545 2.3e-40 169.9 163 54.6
HanXRQChr15g0471501 Helianthus annuus HOM05D004693 ORTHO05D005545 2.0e-39 166.8 189 51.3
Peaxi162Scf00394g00618 Petunia axillaris HOM05D004693 ORTHO05D005545 2.6e-39 166.4 241 41.9
SGA_v2.0_scaffold33G13498 Striga asiatica HOM05D004693 ORTHO05D005545 7.5e-39 164.9 195 48.2
Phvul.004G065900 Phaseolus vulgaris HOM05D004693 ORTHO05D005545 1.3e-38 164.1 174 58.0
Cpa.g.sc282.10 Carica papaya HOM05D004693 ORTHO05D005545 9.5e-34 147.9 169 49.7
CiPaw.04G042100 Carya illinoinensis HOM05D000286 ORTHO05D000170 2.8e-33 146.4 148 54.7
FAN18G0638 Fragaria x ananassa HOM05D000077 ORTHO05D005545 1.1e-32 144.4 145 54.5
CDE12G0456 Ceratophyllum demersum HOM05D001541 ORTHO05D001465 2.4e-32 143.3 243 39.1
Nitab4.5_0002207g0120 Nicotiana tabacum HOM05D004693 ORTHO05D005545 3.4e-31 139.4 216 41.2
MD06G1045600 Malus domestica HOM05D004693 ORTHO05D005545 3.9e-27 125.9 151 50.3
Peaxi162Scf00205g00220 Petunia axillaris HOM05D004693 ORTHO05D005545 4.0e-24 115.9 127 46.5
AagrBONN_evm.TU.Sc2ySwM_362.1343 Anthoceros agrestis HOM05D004693 ORTHO05D005545 3.0e-19 99.8 79 57.0
PRCOL_00000715 Prasinoderma coloniale HOM05D004693 ORTHO05D005545 1.6e-17 94.0 150 35.3
MCO02G342 Micromonas commoda HOM05D004693 ORTHO05D005545 1.1e-16 91.3 132 34.1
MCO01G364 Micromonas commoda HOM05D004693 ORTHO05D005545 1.8e-16 90.5 158 32.9
VMungo0251G1321 Vigna mungo HOM05D000154 ORTHO05D000092 3.5e-12 76.3 83 51.8
Cre06.g255300 Chlamydomonas reinhardtii HOM05D004693 ORTHO05D005545 4.6e-12 75.9 150 28.7
Cre03.g207000 Chlamydomonas reinhardtii HOM05D004693 ORTHO05D005545 6.0e-12 75.5 141 32.6
PRCOL_00005350 Prasinoderma coloniale HOM05D004693 ORTHO05D005545 8.1e-09 65.1 124 27.4
PRCOL_00000440 Prasinoderma coloniale HOM05D004693 ORTHO05D005545 4.0e-08 62.8 156 30.1
MCO03G104 Micromonas commoda HOM05D004693 ORTHO05D005545 2.0e-07 60.5 121 28.9
CDE06G0519 Ceratophyllum demersum HOM05D004693 ORTHO05D005545 1.0e-06 58.2 118 35.6
Nitab4.5_0007808g0020 Nicotiana tabacum HOM05D004693 ORTHO05D005545 2.9e-06 56.6 78 38.5


User provided reference genes

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