Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G32447 Trifolium pratense HOM05D006042 ORTHO05D007658 2.0e-158 562.4 286 100.0
Psat1g013000 Pisum sativum HOM05D006042 ORTHO05D007658 3.2e-140 501.9 286 89.9
Medtr6g017260 Medicago truncatula HOM05D006042 ORTHO05D007658 1.4e-130 469.9 288 86.1
Ca_30067_v3 Cicer arietinum L. HOM05D006042 ORTHO05D007658 1.8e-130 469.5 283 83.4
Lj2g0022623 Lotus japonicus HOM05D006042 ORTHO05D007658 5.4e-111 404.8 291 74.9
Ca_26178_v3 Cicer arietinum L. HOM05D006042 ORTHO05D007658 9.2e-111 404.1 247 83.0
Lalb_Chr06g0174661 Lupinus albus HOM05D006042 ORTHO05D007658 7.8e-110 401.0 285 76.8
Glyma.19G045600 Glycine max HOM05D006042 ORTHO05D007658 2.1e-107 392.9 286 74.1
VMungo0464G1707 Vigna mungo HOM05D006042 ORTHO05D007658 6.8e-106 387.9 288 71.5
Phvul.004G063000 Phaseolus vulgaris HOM05D006042 ORTHO05D007658 5.8e-105 384.8 286 71.3
arahy.Tifrunner.gnm1.ann1.TWH6SW Arachis hypogaea HOM05D006042 ORTHO05D007658 2.1e-102 376.3 288 71.2
CSS0008868 Camellia sinensis var. sinensis HOM05D006042 ORTHO05D007658 1.5e-97 360.1 281 69.0
Oeu030760.1 Olea europaea HOM05D006042 ORTHO05D007658 8.4e-96 354.4 264 70.5
CANSAT64G1085 Cannabis sativa HOM05D006042 ORTHO05D007658 4.1e-95 352.1 225 79.6
Manes.02G066700 Manihot esculenta HOM05D006042 ORTHO05D007658 4.1e-95 352.1 228 78.5
Potri.004G102100 Populus trichocarpa HOM05D006042 ORTHO05D007658 5.4e-95 351.7 259 72.2
Ciclev10012434m.g Citrus clementina HOM05D006042 ORTHO05D007658 9.2e-95 350.9 256 71.9
QL02p052540 Quercus lobata HOM05D006042 ORTHO05D007658 9.2e-95 350.9 274 69.7
AL7G51880 Arabidopsis lyrata HOM05D006042 ORTHO05D007658 1.2e-94 350.5 286 67.8
Atru.chr8.825 Acer truncatum HOM05D006042 ORTHO05D007658 3.5e-94 349.0 252 73.0
Solyc03g034170.4 Solanum lycopersicum HOM05D006042 ORTHO05D007658 1.7e-93 346.7 218 79.8
THA.LOC104805550 Tarenaya hassleriana HOM05D006042 ORTHO05D007658 1.7e-93 346.7 223 81.2
Sopen03g006950 Solanum pennellii HOM05D006042 ORTHO05D007658 3.0e-93 345.9 218 79.4
Gohir.A11G162500 Gossypium hirsutum HOM05D006042 ORTHO05D007658 5.1e-93 345.1 225 78.2
Actinidia26288 Actinidia chinensis HOM05D006042 ORTHO05D007658 8.6e-93 344.4 276 69.6
CARHR214100 Cardamine hirsuta HOM05D006042 ORTHO05D007658 8.6e-93 344.4 288 66.7
ClCG11G005350 Citrullus lanatus HOM05D006042 ORTHO05D007658 8.6e-93 344.4 234 76.1
Gorai.007G180300 Gossypium raimondii HOM05D006042 ORTHO05D007658 8.6e-93 344.4 225 77.3
Thhalv10027870m.g Eutrema salsugineum HOM05D006042 ORTHO05D007658 1.1e-92 344.0 223 80.3
Gohir.D11G168732 Gossypium hirsutum HOM05D006042 ORTHO05D007658 1.1e-92 344.0 225 76.9
MD09G1084900 Malus domestica HOM05D006042 ORTHO05D007658 1.1e-92 344.0 283 66.8
Carub.0007s3720 Capsella rubella HOM05D006042 ORTHO05D007658 1.9e-92 343.2 224 79.5
CsaV3_5G039130 Cucumis sativus L. HOM05D006042 ORTHO05D007658 1.9e-92 343.2 237 75.5
Potri.017G112700 Populus trichocarpa HOM05D006042 ORTHO05D007658 1.9e-92 343.2 251 72.9
Thecc.04G137400 Theobroma cacao HOM05D006042 ORTHO05D007658 1.9e-92 343.2 280 67.1
BcaC08g44400 Brassica carinata HOM05D006042 ORTHO05D007658 4.3e-92 342.0 227 78.4
MD17G1074400 Malus domestica HOM05D006042 ORTHO05D007658 4.3e-92 342.0 275 66.9
GSVIVG01036442001 Vitis vinifera HOM05D006042 ORTHO05D007658 4.3e-92 342.0 275 68.7
Hma1.2p1_0550F.1_g177265 Hydrangea macrophylla HOM05D006042 ORTHO05D007658 5.6e-92 341.7 218 79.4
PGSC0003DMG400019582 Solanum tuberosum HOM05D006042 ORTHO05D007658 5.6e-92 341.7 218 78.4
C06p18330 Brassica napus HOM05D006042 ORTHO05D007658 7.3e-92 341.3 227 78.4
BolC6t37045H Brassica oleracea HOM05D006042 ORTHO05D007658 7.3e-92 341.3 227 78.4
Eucgr.F02481 Eucalyptus grandis HOM05D006042 ORTHO05D007658 7.3e-92 341.3 278 66.5
Sp1g29720 Schrenkiella parvula HOM05D006042 ORTHO05D007658 7.3e-92 341.3 226 78.3
Nitab4.5_0002489g0020 Nicotiana tabacum HOM05D006042 ORTHO05D007658 9.6e-92 340.9 254 70.1
CiPaw.03G059800 Carya illinoinensis HOM05D006042 ORTHO05D007658 1.2e-91 340.5 221 78.3
Cc07_g09000 Coffea canephora HOM05D006042 ORTHO05D007658 1.2e-91 340.5 216 79.2
Nitab4.5_0004721g0010 Nicotiana tabacum HOM05D006042 ORTHO05D007658 1.2e-91 340.5 266 67.7
Duzib138G1312 Durio zibethinus HOM05D006042 ORTHO05D007658 2.8e-91 339.3 271 67.5
Aqoxy3G03922 Aquilegia oxysepala HOM05D006042 ORTHO05D007658 3.6e-91 339.0 284 63.0
BraA07t29682Z Brassica rapa HOM05D006042 ORTHO05D007658 6.2e-91 338.2 226 79.2
CAN.G995.2 Capsicum annuum HOM05D006042 ORTHO05D007658 1.1e-90 337.4 249 71.5
A07p19810 Brassica napus HOM05D006042 ORTHO05D007658 1.4e-90 337.0 226 78.8
Zm00001eb042940 Zea mays HOM05D006042 ORTHO05D007658 2.4e-90 336.3 236 72.9
Cfa007944 Carpinus fangiana HOM05D006042 ORTHO05D007658 3.1e-90 335.9 260 71.2
Migut.H00201 Erythranthe guttata HOM05D006042 ORTHO05D007658 6.8e-90 334.7 231 73.2
Prupe.3G239600 Prunus persica HOM05D006042 ORTHO05D007658 2.0e-89 333.2 226 77.0
BcaB02g07998 Brassica carinata HOM05D006042 ORTHO05D007658 3.4e-89 332.4 227 76.7
COL.COLO4_16190 Corchorus olitorius HOM05D002377 ORTHO05D007658 3.4e-89 332.4 204 82.8
Os08g0359000 Oryza sativa ssp. japonica HOM05D006042 ORTHO05D007658 4.4e-89 332.0 197 81.2
PGR004G1523 Punica granatum HOM05D006042 ORTHO05D007658 5.8e-89 331.6 224 74.1
PSO063G0034 Papaver somniferum HOM05D006042 ORTHO05D007658 7.6e-89 331.3 226 74.3
HanXRQChr14g0438681 Helianthus annuus HOM05D006042 ORTHO05D007658 2.9e-88 329.3 277 64.3
PSO782G1563 Papaver somniferum HOM05D006042 ORTHO05D007658 1.1e-87 327.4 226 73.5
SalBow3G2575 Salvia bowleyana HOM05D006042 ORTHO05D007658 1.4e-87 327.0 271 65.3
SalBow3G3727 Salvia bowleyana HOM05D006042 ORTHO05D007658 1.4e-87 327.0 271 65.3
FvH4_6g45340 Fragaria vesca HOM05D006042 ORTHO05D007658 1.9e-87 326.6 253 66.0
FAN14G4491 Fragaria x ananassa HOM05D006042 ORTHO05D007658 1.9e-87 326.6 253 66.0
TWI53G1226 Tripterygium wilfordii HOM05D006042 ORTHO05D007658 1.9e-87 326.6 259 66.8
Lsat_1_v5_gn_4_153081 Lactuca sativa HOM05D006042 ORTHO05D007658 3.2e-87 325.9 224 74.1
MSTRG.2747 Avicennia marina HOM05D006042 ORTHO05D007658 4.2e-87 325.5 216 75.0
ATR0589G121 Amborella trichopoda HOM05D006042 ORTHO05D007658 1.2e-86 323.9 263 67.7
FAN09G0627 Fragaria x ananassa HOM05D006042 ORTHO05D007658 1.2e-86 323.9 270 63.3
ECA232G3341 Erigeron canadensis HOM05D006042 ORTHO05D007658 1.6e-86 323.6 218 74.3
MBI09_g41181_MAGBIO Magnolia biondii HOM05D006042 ORTHO05D007658 7.8e-86 321.2 276 65.2
FAN05G0122 Fragaria x ananassa HOM05D006042 ORTHO05D007658 1.3e-85 320.5 261 64.4
Sc10g0001330 Simmondsia chinensis HOM05D006042 ORTHO05D007658 3.9e-85 318.9 247 64.8
DCAR_009854 Daucus carota HOM05D006042 ORTHO05D007658 6.6e-85 318.2 218 74.8
RcHm_v2.0_Chr2g0163121 Rosa chinensis HOM05D006042 ORTHO05D007658 8.7e-85 317.8 264 62.9
Hund16127 Selenicereus undatus HOM05D006042 ORTHO05D007658 1.9e-84 316.6 212 73.1
AT5G38660 Arabidopsis thaliana HOM05D006042 ORTHO05D007658 1.3e-83 313.9 200 80.5
AUR62014538 Chenopodium quinoa HOM05D006042 ORTHO05D007658 2.8e-83 312.8 183 82.5
Sed0018352 Sechium edule HOM05D006042 ORTHO05D007658 1.4e-82 310.5 212 75.5
arahy.Tifrunner.gnm1.ann1.4I03R9 Arachis hypogaea HOM05D006042 ORTHO05D007658 1.8e-82 310.1 277 61.0
AUR62008965 Chenopodium quinoa HOM05D006042 ORTHO05D007658 6.9e-82 308.1 184 80.4
Lj2C447G3 Lonicera japonica HOM05D006042 ORTHO05D007658 1.5e-81 307.0 173 87.3
FAN02G0945 Fragaria x ananassa HOM05D006042 ORTHO05D007658 2.6e-81 306.2 277 61.0
Rhsim08G0079500 Rhododendron simsii HOM05D006042 ORTHO05D007658 2.9e-80 302.8 283 62.2
vmacro18106 Vaccinium macrocarpon HOM05D006042 ORTHO05D007658 2.9e-80 302.8 170 87.6
Aa31LG9G16960 Aethionema arabicum HOM05D006042 ORTHO05D007658 3.2e-79 299.3 179 82.7
HPP92_008047 Vanilla planifolia HOM05D006042 ORTHO05D007658 3.5e-78 295.8 236 65.3
SEGI_07967 Sequoiadendron giganteum HOM05D006042 ORTHO05D007658 1.0e-77 294.3 250 63.2
Mapoly0019s0052 Marchantia polymorpha HOM05D006042 ORTHO05D007658 1.7e-77 293.5 215 67.4
Sabra04G0078300 Salix brachista HOM05D006042 ORTHO05D007658 8.7e-77 291.2 321 54.2
SGA_v2.0_scaffold49G18090 Striga asiatica HOM05D006042 ORTHO05D007658 5.6e-76 288.5 187 78.1
AagrBONN_evm.TU.Sc2ySwM_340.223 Anthoceros agrestis HOM05D000513 ORTHO05D003825 2.1e-75 286.6 198 72.2
Pp3c4_3720 Physcomitrium patens HOM05D006042 ORTHO05D007658 2.4e-74 283.1 221 68.8
SMO232G0004 Selaginella moellendorffii HOM05D006042 ORTHO05D007658 4.9e-72 275.4 228 62.7
EL10Ac2g04605 Beta vulgaris HOM05D006042 ORTHO05D007658 7.1e-71 271.6 197 72.1
CDE09G0042 Ceratophyllum demersum HOM05D006042 ORTHO05D007658 8.7e-69 264.6 194 70.1
CBR_g44937 Chara braunii HOM05D006042 ORTHO05D007658 1.1e-66 257.7 197 61.4
Nn3g17761 Nelumbo nucifera HOM05D006042 ORTHO05D007658 4.5e-65 252.3 227 59.9
Dinv34847 Davidia involucrata HOM05D006042 ORTHO05D007658 6.0e-62 241.9 160 75.6
Hma1.2p1_0550F.1_g177260 Hydrangea macrophylla HOM05D006042 ORTHO05D007658 1.8e-61 240.4 161 77.0
Cpa.g.sc179.22 Carica papaya HOM05D006042 ORTHO05D007658 2.3e-53 213.4 272 51.1
MELO3C022088.2 Cucumis melo HOM05D006042 ORTHO05D007658 1.5e-52 210.7 270 50.7
Peaxi162Scf00751g00624 Petunia axillaris HOM05D006042 ORTHO05D007658 2.2e-51 206.8 121 82.6
PRCOL_00000779 Prasinoderma coloniale HOM05D006042 ORTHO05D007658 3.8e-48 196.1 192 53.6
MBI09_g40289_MAGBIO Magnolia biondii HOM05D006042 ORTHO05D007658 2.7e-46 189.9 135 71.1
BcaC02g09662 Brassica carinata HOM05D006042 ORTHO05D007658 3.0e-45 186.4 226 53.5
Cre16.g665250 Chlamydomonas reinhardtii HOM05D006042 ORTHO05D007658 5.3e-42 175.6 186 50.5
MCO16G088 Micromonas commoda HOM05D006042 ORTHO05D007658 5.9e-41 172.2 225 42.7
BolC3t18613H Brassica oleracea HOM05D006042 ORTHO05D032368 8.5e-40 168.3 97 84.5
GSVIVG01026074001 Vitis vinifera HOM05D006042 ORTHO05D007658 1.4e-39 167.5 121 72.7
BolC5t30891H Brassica oleracea HOM05D006042 ORTHO05D007658 5.5e-39 165.6 97 83.5
TAR278G0002 Trochodendron aralioides HOM05D006042 ORTHO05D007658 8.8e-37 158.3 167 55.1
C04p45290 Brassica napus HOM05D006042 ORTHO05D007658 3.5e-33 146.4 280 40.7
unitig_0.g9 Utricularia gibba HOM05D006042 ORTHO05D007658 3.6e-30 136.3 80 81.2
Cpa.g.sc179.23 Carica papaya HOM05D006042 ORTHO05D007658 4.7e-30 136.0 78 83.3
Haze_14130 Corylus avellana HOM05D006042 ORTHO05D007658 2.6e-28 130.2 77 83.1
Haze_14131 Corylus avellana HOM05D006042 ORTHO05D007658 3.3e-28 129.8 172 52.9
BolC4t26112H Brassica oleracea HOM05D006042 ORTHO05D007658 4.4e-28 129.4 183 46.4
GSVIVG01027526001 Vitis vinifera HOM05D006042 ORTHO05D007658 6.3e-27 125.6 78 79.5
QL02p057613 Quercus lobata HOM05D006042 ORTHO05D007658 4.4e-20 102.8 70 71.4
Sabra17G0093400 Salix brachista HOM05D006042 ORTHO05D007658 1.2e-17 94.7 79 68.4
Ah.16g101960 Amaranthus hybridus HOM05D000095 ORTHO05D000330 7.7e-17 92.0 57 78.9
CARHR262580 Cardamine hirsuta HOM05D006042 ORTHO05D007658 2.2e-16 90.5 140 47.9
BcaC05g29172 Brassica carinata HOM05D006042 ORTHO05D032368 3.2e-15 86.7 50 82.0
C02p54890 Brassica napus HOM05D006042 ORTHO05D032368 4.2e-15 86.3 51 80.4
Phvul.004G063400 Phaseolus vulgaris HOM05D002377 ORTHO05D002656 3.4e-12 76.6 55 69.1
Peaxi162Scf00104g00074 Petunia axillaris HOM05D006042 ORTHO05D007658 1.3e-11 74.7 48 75.0
Phvul.004G063200 Phaseolus vulgaris HOM05D002377 ORTHO05D002656 3.7e-11 73.2 47 74.5
VMungo0464G0819 Vigna mungo HOM05D006042 ORTHO05D007658 6.6e-08 62.4 47 66.0
Cpa.g.sc179.24 Carica papaya HOM05D006042 ORTHO05D007658 1.6e-06 57.8 41 70.7
unitig_0.g10 Utricularia gibba HOM05D006042 ORTHO05D007658 6.1e-06 55.8 45 66.7


User provided reference genes

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