Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G32440 Trifolium pratense HOM05D000106 ORTHO05D411452 5.8e-71 270.8 137 100.0
TPR.G9292 Trifolium pratense HOM05D000106 ORTHO05D008911 1.1e-34 150.2 226 42.9
Medtr7g057170 Medicago truncatula HOM05D000106 ORTHO05D008911 7.2e-29 131.0 194 41.8
Psat3g145880 Pisum sativum HOM05D000106 ORTHO05D008911 3.0e-27 125.6 225 39.6
Ca_05137_v3 Cicer arietinum L. HOM05D000106 ORTHO05D008911 1.5e-26 123.2 85 68.2
Glyma.16G092600 Glycine max HOM05D000106 ORTHO05D008911 3.5e-23 112.1 115 51.3
Lalb_Chr01g0022311 Lupinus albus HOM05D000106 ORTHO05D008911 1.7e-22 109.8 114 50.9
Phvul.010G018300 Phaseolus vulgaris HOM05D000106 ORTHO05D008911 5.0e-22 108.2 115 48.7
VMungo0331G1264 Vigna mungo HOM05D000106 ORTHO05D008911 2.7e-20 102.4 117 47.0
Cpa.g.sc8.151 Carica papaya HOM05D000106 ORTHO05D008911 3.0e-19 99.0 153 39.2
Eucgr.H00798 Eucalyptus grandis HOM05D000106 ORTHO05D008911 6.3e-17 91.3 223 33.6
arahy.Tifrunner.gnm1.ann1.037YNN Arachis hypogaea HOM05D000106 ORTHO05D008911 2.7e-15 85.9 88 50.0
arahy.Tifrunner.gnm1.ann1.QR40AE Arachis hypogaea HOM05D000106 ORTHO05D008911 2.7e-15 85.9 88 50.0
Lj3g0016277 Lotus japonicus HOM05D000106 ORTHO05D008911 2.7e-15 85.9 82 51.2
Gorai.001G186800 Gossypium raimondii HOM05D000106 ORTHO05D008911 4.5e-15 85.1 88 47.7
Gohir.A07G156600 Gossypium hirsutum HOM05D000106 ORTHO05D008911 1.7e-14 83.2 115 44.3
CiPaw.04G105300 Carya illinoinensis HOM05D000106 ORTHO05D008911 3.8e-14 82.0 115 38.3
Gohir.D07G162900 Gossypium hirsutum HOM05D000106 ORTHO05D008911 3.8e-14 82.0 88 46.6
Haze_24805 Corylus avellana HOM05D000106 ORTHO05D008911 5.0e-14 81.6 199 31.7
AUR62001085 Chenopodium quinoa HOM05D000106 ORTHO05D008911 6.5e-14 81.3 76 52.6
Atru.chr5.2121 Acer truncatum HOM05D000106 ORTHO05D008911 8.5e-14 80.9 114 40.4
Duzib138G1848 Durio zibethinus HOM05D000106 ORTHO05D008911 8.5e-14 80.9 116 40.5
TWI36G0403 Tripterygium wilfordii HOM05D000106 ORTHO05D008911 1.5e-13 80.1 116 40.5
Potri.002G242700 Populus trichocarpa HOM05D000106 ORTHO05D008911 2.5e-13 79.3 222 29.3
COL.COLO4_15689 Corchorus olitorius HOM05D000106 ORTHO05D008911 3.2e-13 79.0 118 39.8
CSS0007106 Camellia sinensis var. sinensis HOM05D000106 ORTHO05D008911 4.2e-13 78.6 116 39.7
Cfa002574 Carpinus fangiana HOM05D000106 ORTHO05D008911 4.2e-13 78.6 115 39.1
Actinidia30074 Actinidia chinensis HOM05D000106 ORTHO05D008911 7.2e-13 77.8 115 37.4
CiPaw.03G149000 Carya illinoinensis HOM05D000106 ORTHO05D008911 9.4e-13 77.4 223 28.3
PGR083G1059 Punica granatum HOM05D000106 ORTHO05D008911 1.6e-12 76.6 118 42.4
vmacro02761 Vaccinium macrocarpon HOM05D000106 ORTHO05D008911 1.6e-12 76.6 200 29.5
QL09p054453 Quercus lobata HOM05D000106 ORTHO05D008911 2.1e-12 76.3 82 47.6
Ciclev10018776m.g Citrus clementina HOM05D000106 ORTHO05D008911 2.7e-12 75.9 116 36.2
Thecc.01G225100 Theobroma cacao HOM05D000106 ORTHO05D008911 1.4e-11 73.6 115 38.3
Lj2A1130T53 Lonicera japonica HOM05D000106 ORTHO05D008911 2.3e-11 72.8 187 29.4
Gohir.A08G194800 Gossypium hirsutum HOM05D000106 ORTHO05D008911 3.0e-11 72.4 115 39.1
Rhsim13G0045300 Rhododendron simsii HOM05D001237 ORTHO05D008911 4.0e-11 72.0 116 34.5
Manes.12G043301 Manihot esculenta HOM05D000106 ORTHO05D008911 5.2e-11 71.6 117 38.5
Manes.12G045000 Manihot esculenta HOM05D000106 ORTHO05D008911 5.2e-11 71.6 115 37.4
Peaxi162Scf00107g02028 Petunia axillaris HOM05D000106 ORTHO05D008911 5.2e-11 71.6 224 25.9
MD10G1164000 Malus domestica HOM05D000106 ORTHO05D008911 6.8e-11 71.2 81 44.4
Gohir.D08G212500 Gossypium hirsutum HOM05D000106 ORTHO05D008911 1.2e-10 70.5 115 37.4
Gorai.004G225900 Gossypium raimondii HOM05D000106 ORTHO05D008911 1.2e-10 70.5 115 37.4
Prupe.8G202400 Prunus persica HOM05D000106 ORTHO05D008911 1.2e-10 70.5 114 36.8
Oeu004070.1 Olea europaea HOM05D000106 ORTHO05D008911 1.5e-10 70.1 80 45.0
Migut.D02524 Erythranthe guttata HOM05D000106 ORTHO05D008911 2.6e-10 69.3 87 41.4
FAN27G3286 Fragaria x ananassa HOM05D000106 ORTHO05D008911 2.6e-10 69.3 99 35.4
FAN15G2737 Fragaria x ananassa HOM05D000106 ORTHO05D008911 4.4e-10 68.6 83 38.6
FvH4_2g19020 Fragaria vesca HOM05D000106 ORTHO05D008911 7.5e-10 67.8 99 35.4
FAN24G3379 Fragaria x ananassa HOM05D000106 ORTHO05D008911 7.5e-10 67.8 99 35.4
Actinidia37597 Actinidia chinensis HOM05D000106 ORTHO05D008911 1.3e-09 67.0 116 34.5
ECA236G2622 Erigeron canadensis HOM05D000106 ORTHO05D008911 2.8e-09 65.9 101 36.6
Cc01_g16990 Coffea canephora HOM05D000106 ORTHO05D008911 3.7e-09 65.5 115 32.2
EL10Ac7g17843 Beta vulgaris HOM05D000106 ORTHO05D008911 6.3e-09 64.7 76 46.1
HanXRQChr04g0108151 Helianthus annuus HOM05D000106 ORTHO05D008911 8.3e-09 64.3 92 35.9
Nitab4.5_0003758g0010 Nicotiana tabacum HOM05D000106 ORTHO05D008911 8.3e-09 64.3 73 42.5
GSVIVG01028662001 Vitis vinifera HOM05D000106 ORTHO05D008911 8.3e-09 64.3 116 33.6
Ah.08g214300 Amaranthus hybridus HOM05D006095 ORTHO05D008911 1.1e-08 63.9 123 38.2
AUR62008914 Chenopodium quinoa HOM05D000106 ORTHO05D008911 1.1e-08 63.9 53 52.8
Nitab4.5_0000045g0300 Nicotiana tabacum HOM05D000106 ORTHO05D008911 1.4e-08 63.5 73 42.5
RcHm_v2.0_Chr6g0284821 Rosa chinensis HOM05D000106 ORTHO05D008911 2.4e-08 62.8 83 38.6
SalBow6G2530 Salvia bowleyana HOM05D000106 ORTHO05D008911 4.1e-08 62.0 82 36.6
SalBow6G5901 Salvia bowleyana HOM05D000106 ORTHO05D008911 4.1e-08 62.0 82 36.6
Sc05g0002170 Simmondsia chinensis HOM05D000106 ORTHO05D008911 7.0e-08 61.2 116 34.5
Aqoxy2G03877 Aquilegia oxysepala HOM05D000106 ORTHO05D008911 9.1e-08 60.8 116 33.6
CAN.G1462.1 Capsicum annuum HOM05D000106 ORTHO05D008911 9.1e-08 60.8 73 38.4
THA.LOC104803099 Tarenaya hassleriana HOM05D000106 ORTHO05D008911 9.1e-08 60.8 85 36.5
CARHR183120 Cardamine hirsuta HOM05D000106 ORTHO05D008911 1.2e-07 60.5 78 38.5
Solyc09g060110.4 Solanum lycopersicum HOM05D000106 ORTHO05D008911 1.2e-07 60.5 73 34.2
PGSC0003DMG401017656 Solanum tuberosum HOM05D000106 ORTHO05D008911 1.2e-07 60.5 73 35.6
Sopen09g023740 Solanum pennellii HOM05D000106 ORTHO05D008911 1.6e-07 60.1 73 34.2
SGA_v2.0_scaffold18G08323 Striga asiatica HOM05D000106 ORTHO05D008911 1.6e-07 60.1 82 35.4
TAR633G1816 Trochodendron aralioides HOM05D000106 ORTHO05D008911 1.6e-07 60.1 90 34.4
Nn3g19967 Nelumbo nucifera HOM05D000106 ORTHO05D008911 2.0e-07 59.7 87 36.8
BraA06t26808Z Brassica rapa HOM05D000106 ORTHO05D008911 1.0e-06 57.4 85 35.3
Sed0027433 Sechium edule HOM05D000106 ORTHO05D008911 1.3e-06 57.0 100 38.0
Aa31sc37G40 Aethionema arabicum HOM05D000106 ORTHO05D008911 1.7e-06 56.6 78 37.2
Sp2g19150 Schrenkiella parvula HOM05D000106 ORTHO05D008911 2.3e-06 56.2 78 37.2
BcaC06g30761 Brassica carinata HOM05D000106 ORTHO05D008911 2.9e-06 55.8 78 37.2
C07p39390 Brassica napus HOM05D000106 ORTHO05D008911 2.9e-06 55.8 78 37.2
BolC7t44459H Brassica oleracea HOM05D000106 ORTHO05D008911 2.9e-06 55.8 78 37.2
A06p38940 Brassica napus HOM05D000106 ORTHO05D008911 6.6e-06 54.7 78 35.9
AL8G21840 Arabidopsis lyrata HOM05D000106 ORTHO05D008911 8.6e-06 54.3 78 35.9


User provided reference genes

Program Settings