Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G32437 Trifolium pratense HOM05D003712 ORTHO05D004368 2.4e-50 201.8 99 100.0
Medtr4g091020 Medicago truncatula HOM05D003712 ORTHO05D004368 1.3e-35 152.9 86 86.0
Medtr4g091010 Medicago truncatula HOM05D003712 ORTHO05D004368 3.7e-35 151.4 84 83.3
TPR.G22155 Trifolium pratense HOM05D003712 ORTHO05D004368 1.4e-34 149.4 86 86.0
TPR.G32428 Trifolium pratense HOM05D003712 ORTHO05D004368 2.4e-34 148.7 88 84.1
Lj4g0026887 Lotus japonicus HOM05D003712 ORTHO05D004368 3.5e-25 118.2 87 65.5
Glyma.07G190500 Glycine max HOM05D003712 ORTHO05D004368 7.8e-25 117.1 87 65.5
Glyma.08G058700 Glycine max HOM05D003712 ORTHO05D004368 3.9e-24 114.8 86 65.1
arahy.Tifrunner.gnm1.ann1.UHMW3K Arachis hypogaea HOM05D003712 ORTHO05D004368 2.6e-20 102.1 87 55.2
Medtr4g091000 Medicago truncatula HOM05D003712 ORTHO05D004368 7.5e-20 100.5 82 58.5
Lj4g0012776 Lotus japonicus HOM05D003712 ORTHO05D004368 8.3e-19 97.1 85 56.5
Phvul.002G222400 Phaseolus vulgaris HOM05D003712 ORTHO05D004368 1.2e-17 93.2 82 57.3
TAR626G0105 Trochodendron aralioides HOM05D003712 ORTHO05D004368 8.1e-14 80.5 96 40.6
TAR626G1156 Trochodendron aralioides HOM05D003712 ORTHO05D004368 8.1e-14 80.5 96 41.7
DCAR_004145 Daucus carota HOM05D003712 ORTHO05D004368 1.1e-13 80.1 74 51.4
Gohir.A06G127300 Gossypium hirsutum HOM05D003712 ORTHO05D004368 1.8e-13 79.3 93 40.9
DCAR_008077 Daucus carota HOM05D003712 ORTHO05D004368 2.3e-13 79.0 92 46.7
Gohir.A10G138900 Gossypium hirsutum HOM05D003712 ORTHO05D004368 2.3e-13 79.0 97 43.3
Thecc.06G200700 Theobroma cacao HOM05D003712 ORTHO05D004368 3.1e-13 78.6 93 40.9
DCAR_004146 Daucus carota HOM05D003712 ORTHO05D004368 5.2e-13 77.8 75 49.3
Gorai.011G141000 Gossypium raimondii HOM05D003712 ORTHO05D004368 5.2e-13 77.8 97 42.3
Aqoxy4G02045 Aquilegia oxysepala HOM05D003712 ORTHO05D004368 6.8e-13 77.4 93 41.9
Gohir.D10G127800 Gossypium hirsutum HOM05D003712 ORTHO05D004368 6.8e-13 77.4 95 46.3
Gorai.011G140900 Gossypium raimondii HOM05D003712 ORTHO05D004368 6.8e-13 77.4 95 46.3
MBI18_g37562_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 6.8e-13 77.4 65 44.6
RcHm_v2.0_Chr5g0006151 Rosa chinensis HOM05D003712 ORTHO05D004368 6.8e-13 77.4 95 42.1
FAN21G1388 Fragaria x ananassa HOM05D003712 ORTHO05D004368 8.9e-13 77.0 79 39.2
Manes.13G034200 Manihot esculenta HOM05D003712 ORTHO05D004368 8.9e-13 77.0 92 45.7
Potri.005G224300 Populus trichocarpa HOM05D003712 ORTHO05D004368 8.9e-13 77.0 91 41.8
Prupe.3G230700 Prunus persica HOM05D003712 ORTHO05D004368 8.9e-13 77.0 99 38.4
Gohir.D10G127900 Gossypium hirsutum HOM05D003712 ORTHO05D004368 1.2e-12 76.6 97 41.2
Oeu032463.1 Olea europaea HOM05D003712 ORTHO05D004368 1.5e-12 76.3 86 37.2
DCAR_008079 Daucus carota HOM05D003712 ORTHO05D004368 2.0e-12 75.9 91 46.2
DCAR_008081 Daucus carota HOM05D003712 ORTHO05D004368 2.0e-12 75.9 91 46.2
FAN25G2638 Fragaria x ananassa HOM05D003712 ORTHO05D004368 2.6e-12 75.5 56 53.6
Gohir.D06G128000 Gossypium hirsutum HOM05D003712 ORTHO05D004368 2.6e-12 75.5 93 40.9
Gorai.010G149700 Gossypium raimondii HOM05D003712 ORTHO05D004368 2.6e-12 75.5 93 40.9
MD17G1084800 Malus domestica HOM05D003712 ORTHO05D004368 2.6e-12 75.5 87 40.2
Gohir.A10G139000 Gossypium hirsutum HOM05D003712 ORTHO05D004368 3.4e-12 75.1 94 41.5
Actinidia24056 Actinidia chinensis HOM05D003712 ORTHO05D004368 4.4e-12 74.7 95 42.1
CiPaw.10G118000 Carya illinoinensis HOM05D003712 ORTHO05D004368 4.4e-12 74.7 88 39.8
Migut.H01521 Erythranthe guttata HOM05D003712 ORTHO05D004368 4.4e-12 74.7 83 44.6
Manes.12G082800 Manihot esculenta HOM05D003712 ORTHO05D004368 4.4e-12 74.7 93 39.8
Potri.007G106900 Populus trichocarpa HOM05D003712 ORTHO05D004368 4.4e-12 74.7 96 40.6
FAN16G1684 Fragaria x ananassa HOM05D003712 ORTHO05D004368 5.8e-12 74.3 79 45.6
Ciclev10017864m.g Citrus clementina HOM05D003712 ORTHO05D004368 7.5e-12 73.9 80 43.8
DCAR_024926 Daucus carota HOM05D003712 ORTHO05D004368 7.5e-12 73.9 91 44.0
FvH4_3g03881 Fragaria vesca HOM05D003712 ORTHO05D004368 7.5e-12 73.9 79 45.6
HanXRQChr16g0517551 Helianthus annuus HOM05D003712 ORTHO05D004368 7.5e-12 73.9 92 41.3
MBI19_g03250_MAGBIO Magnolia biondii HOM05D000165 ORTHO05D008234 7.5e-12 73.9 62 50.0
DCAR_004147 Daucus carota HOM05D003712 ORTHO05D004368 9.9e-12 73.6 56 53.6
RcHm_v2.0_Chr2g0161661 Rosa chinensis HOM05D003712 ORTHO05D004368 9.9e-12 73.6 58 50.0
RcHm_v2.0_Chr2g0161721 Rosa chinensis HOM05D003712 ORTHO05D004368 9.9e-12 73.6 58 50.0
SalBow7G0868 Salvia bowleyana HOM05D003712 ORTHO05D004368 9.9e-12 73.6 49 63.3
MD09G1090300 Malus domestica HOM05D003712 ORTHO05D004368 1.3e-11 73.2 85 40.0
Eucgr.E03691 Eucalyptus grandis HOM05D003712 ORTHO05D004368 1.7e-11 72.8 51 49.0
Potri.007G117900 Populus trichocarpa HOM05D003712 ORTHO05D004368 1.7e-11 72.8 85 42.4
Ciclev10003665m.g Citrus clementina HOM05D003712 ORTHO05D004368 2.2e-11 72.4 76 42.1
FvH4_3g03882 Fragaria vesca HOM05D003712 ORTHO05D004368 2.2e-11 72.4 83 43.4
DCAR_004148 Daucus carota HOM05D003712 ORTHO05D004368 2.9e-11 72.0 52 50.0
Migut.M00335 Erythranthe guttata HOM05D003712 ORTHO05D004368 2.9e-11 72.0 49 57.1
Migut.M00339 Erythranthe guttata HOM05D003712 ORTHO05D004368 2.9e-11 72.0 49 57.1
Oeu032464.1 Olea europaea HOM05D003712 ORTHO05D004368 2.9e-11 72.0 87 34.5
Cfa014527 Carpinus fangiana HOM05D003712 ORTHO05D004368 3.7e-11 71.6 88 38.6
SalBow7G4100 Salvia bowleyana HOM05D003712 ORTHO05D004368 3.7e-11 71.6 86 47.7
Ciclev10003398m.g Citrus clementina HOM05D003712 ORTHO05D004368 6.4e-11 70.9 51 52.9
COL.COLO4_06989 Corchorus olitorius HOM05D003712 ORTHO05D004368 6.4e-11 70.9 95 43.2
FAN16G2577 Fragaria x ananassa HOM05D003712 ORTHO05D004368 6.4e-11 70.9 95 31.6
FAN25G1764 Fragaria x ananassa HOM05D003712 ORTHO05D004368 6.4e-11 70.9 63 41.3
Hma1.2p1_0565F.1_g179580 Hydrangea macrophylla HOM05D003712 ORTHO05D004368 6.4e-11 70.9 79 43.0
Potri.007G109600 Populus trichocarpa HOM05D003712 ORTHO05D004368 6.4e-11 70.9 95 41.1
Prupe.1G064500 Prunus persica HOM05D003712 ORTHO05D004368 6.4e-11 70.9 49 55.1
RcHm_v2.0_Chr5g0006161 Rosa chinensis HOM05D003712 ORTHO05D004368 6.4e-11 70.9 60 41.7
Ciclev10033348m.g Citrus clementina HOM05D003712 ORTHO05D004368 8.3e-11 70.5 81 39.5
Lsat_1_v5_gn_4_56541 Lactuca sativa HOM05D003712 ORTHO05D004368 8.3e-11 70.5 96 37.5
Potri.005G061780 Populus trichocarpa HOM05D003712 ORTHO05D004368 8.3e-11 70.5 51 54.9
COL.COLO4_31595 Corchorus olitorius HOM05D003712 ORTHO05D004368 1.4e-10 69.7 84 41.7
FvH4_5g34303 Fragaria vesca HOM05D003712 ORTHO05D004368 1.4e-10 69.7 71 43.7
FAN08G3545 Fragaria x ananassa HOM05D003712 ORTHO05D004368 1.4e-10 69.7 71 43.7
FAN18G4187 Fragaria x ananassa HOM05D003712 ORTHO05D004368 1.4e-10 69.7 71 43.7
CsaV3_6G049690 Cucumis sativus L. HOM05D003712 ORTHO05D004368 1.9e-10 69.3 86 38.4
Hma1.2p1_0565F.1_g179590 Hydrangea macrophylla HOM05D003712 ORTHO05D004368 1.9e-10 69.3 77 44.2
Prupe.4G037900 Prunus persica HOM05D003712 ORTHO05D004368 1.9e-10 69.3 83 38.6
Oeu006542.1 Olea europaea HOM05D003712 ORTHO05D004368 2.4e-10 68.9 96 40.6
Prupe.3G230900 Prunus persica HOM05D003712 ORTHO05D004368 2.4e-10 68.9 82 40.2
Haze_06583 Corylus avellana HOM05D003712 ORTHO05D004368 3.2e-10 68.6 76 40.8
Cpa.g.sc228.6 Carica papaya HOM05D003712 ORTHO05D004368 4.1e-10 68.2 85 41.2
FvH4_6g44501 Fragaria vesca HOM05D003712 ORTHO05D004368 4.1e-10 68.2 55 50.9
FAN14G5484 Fragaria x ananassa HOM05D003712 ORTHO05D004368 4.1e-10 68.2 55 50.9
Peaxi162Scf00779g00008 Petunia axillaris HOM05D003712 ORTHO05D004368 4.1e-10 68.2 92 38.0
CANSAT56G2493 Cannabis sativa HOM05D003712 ORTHO05D004368 5.4e-10 67.8 103 35.9
FvH4_3g39481 Fragaria vesca HOM05D003712 ORTHO05D004368 5.4e-10 67.8 74 43.2
Oeu006541.1 Olea europaea HOM05D003712 ORTHO05D004368 5.4e-10 67.8 96 37.5
RcHm_v2.0_Chr7g0234891 Rosa chinensis HOM05D003712 ORTHO05D004368 5.4e-10 67.8 51 49.0
FvH4_6g24132 Fragaria vesca HOM05D003712 ORTHO05D004368 7.1e-10 67.4 67 38.8
FvH4_6g44841 Fragaria vesca HOM05D003712 ORTHO05D004368 7.1e-10 67.4 49 53.1
FAN05G3297 Fragaria x ananassa HOM05D004871 ORTHO05D005755 7.1e-10 67.4 60 50.0
FAN11G3078 Fragaria x ananassa HOM05D003712 ORTHO05D004368 7.1e-10 67.4 51 52.9
FAN14G2952 Fragaria x ananassa HOM05D003712 ORTHO05D004368 7.1e-10 67.4 49 53.1
FAN14G3502 Fragaria x ananassa HOM05D003712 ORTHO05D004368 7.1e-10 67.4 49 53.1
MBI06_g08453_MAGBIO Magnolia biondii HOM05D003712 ORTHO05D004368 7.1e-10 67.4 78 38.5
QL01p014092 Quercus lobata HOM05D003712 ORTHO05D004368 7.1e-10 67.4 93 41.9
Actinidia09903 Actinidia chinensis HOM05D003712 ORTHO05D004368 9.2e-10 67.0 54 46.3
Aqoxy5G01667 Aquilegia oxysepala HOM05D003712 ORTHO05D004368 9.2e-10 67.0 96 35.4
Haze_13069 Corylus avellana HOM05D003712 ORTHO05D004368 9.2e-10 67.0 87 39.1
Dinv13825 Davidia involucrata HOM05D003712 ORTHO05D004368 9.2e-10 67.0 53 47.2
Lsat_1_v5_gn_4_56681 Lactuca sativa HOM05D003712 ORTHO05D004368 9.2e-10 67.0 92 38.0
Nitab4.5_0008774g0010 Nicotiana tabacum HOM05D003712 ORTHO05D004368 9.2e-10 67.0 79 44.3
ATR0693G124 Amborella trichopoda HOM05D003712 ORTHO05D004368 1.2e-09 66.6 88 36.4
ECA234G4130 Erigeron canadensis HOM05D003712 ORTHO05D004368 1.2e-09 66.6 91 36.3
FAN14G3156 Fragaria x ananassa HOM05D003712 ORTHO05D004368 1.2e-09 66.6 49 51.0
HanXRQChr15g0488611 Helianthus annuus HOM05D003712 ORTHO05D004368 1.2e-09 66.6 85 41.2
HanXRQChr15g0488621 Helianthus annuus HOM05D003712 ORTHO05D004368 1.2e-09 66.6 85 41.2
FAN09G2580 Fragaria x ananassa HOM05D003712 ORTHO05D004368 1.6e-09 66.2 51 49.0
FAN11G0545 Fragaria x ananassa HOM05D003712 ORTHO05D004368 1.6e-09 66.2 95 29.5
FAN16G2504 Fragaria x ananassa HOM05D003712 ORTHO05D004368 1.6e-09 66.2 52 51.9
HanXRQChr16g0517561 Helianthus annuus HOM05D003712 ORTHO05D004368 1.6e-09 66.2 86 41.9
Nitab4.5_0008654g0020 Nicotiana tabacum HOM05D003712 ORTHO05D004368 1.6e-09 66.2 86 40.7
Sed0026588 Sechium edule HOM05D003712 ORTHO05D004368 1.6e-09 66.2 53 45.3
Aqoxy5G01666 Aquilegia oxysepala HOM05D003712 ORTHO05D004368 2.1e-09 65.9 54 44.4
Eucgr.I00207 Eucalyptus grandis HOM05D003712 ORTHO05D004368 2.1e-09 65.9 93 36.6
FvH4_3g39491 Fragaria vesca HOM05D003712 ORTHO05D004368 2.1e-09 65.9 89 34.8
FAN21G1030 Fragaria x ananassa HOM05D003712 ORTHO05D004368 2.1e-09 65.9 89 36.0
Hma1.2p1_0565F.1_g179610 Hydrangea macrophylla HOM05D003712 ORTHO05D004368 2.1e-09 65.9 79 39.2
Lsat_1_v5_gn_4_56561 Lactuca sativa HOM05D003712 ORTHO05D004368 2.1e-09 65.9 92 37.0
Lsat_1_v5_gn_4_56721 Lactuca sativa HOM05D003712 ORTHO05D004368 2.1e-09 65.9 92 37.0
Nitab4.5_0002956g0080 Nicotiana tabacum HOM05D003712 ORTHO05D004368 2.1e-09 65.9 91 33.0
Aqoxy4G02044 Aquilegia oxysepala HOM05D003712 ORTHO05D004368 2.7e-09 65.5 82 39.0
Nitab4.5_0001871g0080 Nicotiana tabacum HOM05D003712 ORTHO05D004368 2.7e-09 65.5 91 33.0
Os01g0783000 Oryza sativa ssp. japonica HOM05D003712 ORTHO05D004368 2.7e-09 65.5 55 49.1
FAN02G1220 Fragaria x ananassa HOM05D003712 ORTHO05D004368 3.5e-09 65.1 86 37.2
FAN25G3769 Fragaria x ananassa HOM05D003712 ORTHO05D004368 3.5e-09 65.1 89 36.0
HanXRQChr05g0131191 Helianthus annuus HOM05D003712 ORTHO05D004368 3.5e-09 65.1 84 38.1
Lsat_1_v5_gn_4_56621 Lactuca sativa HOM05D003712 ORTHO05D004368 3.5e-09 65.1 92 37.0
Nitab4.5_0001871g0120 Nicotiana tabacum HOM05D003712 ORTHO05D004368 3.5e-09 65.1 51 51.0
Prupe.3G230500 Prunus persica HOM05D003712 ORTHO05D004368 3.5e-09 65.1 85 37.6
Prupe.3G230600 Prunus persica HOM05D003712 ORTHO05D004368 3.5e-09 65.1 94 39.4
FAN02G2973 Fragaria x ananassa HOM05D003712 ORTHO05D004368 4.6e-09 64.7 78 39.7
Peaxi162Scf00485g00072 Petunia axillaris HOM05D003712 ORTHO05D004368 4.6e-09 64.7 91 41.8
Prupe.3G230400 Prunus persica HOM05D003712 ORTHO05D004368 4.6e-09 64.7 49 51.0
Zm00001eb369810 Zea mays HOM05D003712 ORTHO05D004368 4.6e-09 64.7 61 45.9
Actinidia11811 Actinidia chinensis HOM05D003712 ORTHO05D004368 6.0e-09 64.3 54 48.1
ClCG00G003860 Citrullus lanatus HOM05D003712 ORTHO05D004368 6.0e-09 64.3 48 47.9
ClCG01G022520 Citrullus lanatus HOM05D003712 ORTHO05D004368 6.0e-09 64.3 48 47.9
Lsat_1_v5_gn_4_56741 Lactuca sativa HOM05D003712 ORTHO05D004368 6.0e-09 64.3 94 36.2
Potri.002G038350 Populus trichocarpa HOM05D003712 ORTHO05D004368 6.0e-09 64.3 77 37.7
RcHm_v2.0_Chr2g0161751 Rosa chinensis HOM05D003712 ORTHO05D004368 6.0e-09 64.3 85 37.6
Aqoxy4G02036 Aquilegia oxysepala HOM05D003712 ORTHO05D004368 7.8e-09 63.9 82 36.6
Migut.M00336 Erythranthe guttata HOM05D003712 ORTHO05D004368 7.8e-09 63.9 76 35.5
Os01g0782901 Oryza sativa ssp. japonica HOM05D003712 ORTHO05D004368 7.8e-09 63.9 64 48.4
Sed0020030 Sechium edule HOM05D003712 ORTHO05D004368 1.0e-08 63.5 96 34.4
PGSC0003DMG400042227 Solanum tuberosum HOM05D003712 ORTHO05D004368 1.0e-08 63.5 49 53.1
Solyc07g054700.3 Solanum lycopersicum HOM05D003712 ORTHO05D004368 1.3e-08 63.2 89 38.2
FAN14G4046 Fragaria x ananassa HOM05D003712 ORTHO05D004368 1.7e-08 62.8 78 38.5
Nitab4.5_0002791g0030 Nicotiana tabacum HOM05D003712 ORTHO05D004368 1.7e-08 62.8 82 36.6
Nitab4.5_0005244g0050 Nicotiana tabacum HOM05D003712 ORTHO05D004368 1.7e-08 62.8 81 35.8
Peaxi162Scf00089g01522 Petunia axillaris HOM05D003712 ORTHO05D004368 2.3e-08 62.4 91 39.6
Solyc07g054710.2 Solanum lycopersicum HOM05D003712 ORTHO05D004368 2.3e-08 62.4 94 36.2
FvH4_6g44545 Fragaria vesca HOM05D003712 ORTHO05D004368 3.0e-08 62.0 78 38.5
Lsat_1_v5_gn_4_69400 Lactuca sativa HOM05D003712 ORTHO05D004368 3.0e-08 62.0 49 46.9
Nitab4.5_0002956g0060 Nicotiana tabacum HOM05D003712 ORTHO05D004368 3.0e-08 62.0 53 45.3
CiPaw.07G040700 Carya illinoinensis HOM05D003712 ORTHO05D004368 6.6e-08 60.8 80 35.0
Nitab4.5_0014858g0020 Nicotiana tabacum HOM05D003712 ORTHO05D004368 6.6e-08 60.8 82 31.7
CsaV3_6G049680 Cucumis sativus L. HOM05D003712 ORTHO05D004368 8.6e-08 60.5 48 50.0
SalBow8G4951 Salvia bowleyana HOM05D003712 ORTHO05D004368 8.6e-08 60.5 86 37.2
ECA236G2370 Erigeron canadensis HOM05D003712 ORTHO05D004368 1.1e-07 60.1 51 47.1
TWI18G1344 Tripterygium wilfordii HOM05D003712 ORTHO05D004368 1.1e-07 60.1 49 49.0
RcHm_v2.0_Chr5g0071201 Rosa chinensis HOM05D003712 ORTHO05D004368 1.5e-07 59.7 50 44.0
FvH4_6g44490 Fragaria vesca HOM05D003712 ORTHO05D004368 1.9e-07 59.3 40 60.0
DCAR_012976 Daucus carota HOM05D003712 ORTHO05D004368 2.5e-07 58.9 52 38.5
PGSC0003DMG401022401 Solanum tuberosum HOM05D003712 ORTHO05D004368 2.5e-07 58.9 93 36.6
ClCG00G003850 Citrullus lanatus HOM05D003712 ORTHO05D004368 4.3e-07 58.2 48 45.8
ClCG01G022510 Citrullus lanatus HOM05D003712 ORTHO05D004368 4.3e-07 58.2 48 45.8
Peaxi162Scf00779g00018 Petunia axillaris HOM05D003712 ORTHO05D004368 4.3e-07 58.2 90 36.7
Nitab4.5_0000649g0020 Nicotiana tabacum HOM05D003712 ORTHO05D004368 1.2e-06 56.6 87 34.5
Nitab4.5_0005389g0030 Nicotiana tabacum HOM05D003712 ORTHO05D004368 3.6e-06 55.1 99 36.4
FvH4_5g34304 Fragaria vesca HOM05D003712 ORTHO05D004368 4.7e-06 54.7 50 48.0
FAN18G0797 Fragaria x ananassa HOM05D003712 ORTHO05D004368 4.7e-06 54.7 50 48.0
Nitab4.5_0004216g0020 Nicotiana tabacum HOM05D003712 ORTHO05D004368 4.7e-06 54.7 75 40.0


User provided reference genes

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