Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G32421 Trifolium pratense HOM05D067386 ORTHO05D000624 5.4e-290 1000.3 534 100.0
TPR.G32403 Trifolium pratense HOM05D067386 ORTHO05D411856 3.9e-38 163.7 127 76.4
Psat1g210440 Pisum sativum HOM05D000805 ORTHO05D000624 6.3e-20 103.2 117 55.6
Psat4g044680 Pisum sativum HOM05D000805 ORTHO05D000624 3.1e-19 100.9 123 53.7
Medtr4g111770 Medicago truncatula HOM05D000805 ORTHO05D000624 2.6e-18 97.8 108 58.3
Ca_02532_v3 Cicer arietinum L. HOM05D000805 ORTHO05D000624 1.6e-15 88.6 66 65.2
Glyma.05G013800 Glycine max HOM05D000805 ORTHO05D000624 6.1e-15 86.7 121 51.2
Phvul.003G177800 Phaseolus vulgaris HOM05D000805 ORTHO05D000624 6.1e-15 86.7 103 52.4
Lj4g0019200 Lotus japonicus HOM05D000805 ORTHO05D000624 1.0e-14 85.9 121 47.1
Lalb_Chr13g0302381 Lupinus albus HOM05D000805 ORTHO05D000624 1.8e-14 85.1 121 50.4
VMungo1215G1355 Vigna mungo HOM05D000805 ORTHO05D000624 2.3e-14 84.7 117 48.7
Actinidia35074 Actinidia chinensis HOM05D000805 ORTHO05D000624 6.7e-14 83.2 68 55.9
Dinv38593 Davidia involucrata HOM05D000805 ORTHO05D000624 5.7e-13 80.1 68 57.4
TWI15G0225 Tripterygium wilfordii HOM05D000805 ORTHO05D000624 7.4e-13 79.7 68 57.4
Lj9P215T11 Lonicera japonica HOM05D000805 ORTHO05D000624 9.7e-13 79.3 68 57.4
Atru.chr9.743 Acer truncatum HOM05D000805 ORTHO05D000624 1.3e-12 79.0 128 40.6
Cpa.g.sc13.63 Carica papaya HOM05D000805 ORTHO05D000624 1.3e-12 79.0 93 47.3
TWI81G1081 Tripterygium wilfordii HOM05D000805 ORTHO05D000624 1.3e-12 79.0 93 50.5
Glyma.17G122000 Glycine max HOM05D000805 ORTHO05D000624 1.7e-12 78.6 115 49.6
Peaxi162Scf00015g00065 Petunia axillaris HOM05D000805 ORTHO05D000624 1.7e-12 78.6 65 61.5
Eucgr.K02651 Eucalyptus grandis HOM05D000805 ORTHO05D000624 2.2e-12 78.2 81 48.1
Ciclev10022589m.g Citrus clementina HOM05D000805 ORTHO05D000624 2.8e-12 77.8 93 46.2
Lj5P141T66 Lonicera japonica HOM05D000805 ORTHO05D000624 2.8e-12 77.8 68 54.4
Solyc03g119820.1 Solanum lycopersicum HOM05D000805 ORTHO05D000624 2.8e-12 77.8 65 61.5
Sopen03g038680 Solanum pennellii HOM05D000805 ORTHO05D000624 2.8e-12 77.8 65 61.5
TAR629G2157 Trochodendron aralioides HOM05D000805 ORTHO05D000624 2.8e-12 77.8 68 55.9
CiPaw.15G125600 Carya illinoinensis HOM05D000805 ORTHO05D000624 3.7e-12 77.4 121 44.6
Lj9P432T54 Lonicera japonica HOM05D000805 ORTHO05D000624 3.7e-12 77.4 68 55.9
CSS0016408 Camellia sinensis var. sinensis HOM05D000805 ORTHO05D000624 8.2e-12 76.3 123 43.9
Thecc.03G027500 Theobroma cacao HOM05D000805 ORTHO05D000624 8.2e-12 76.3 128 38.3
Oeu016163.1 Olea europaea HOM05D000805 ORTHO05D000624 1.1e-11 75.9 93 45.2
Psat5g107320 Pisum sativum HOM05D000805 ORTHO05D000624 1.1e-11 75.9 148 41.9
Sc04g0003780 Simmondsia chinensis HOM05D000805 ORTHO05D000624 1.1e-11 75.9 110 45.5
Sc04g0003940 Simmondsia chinensis HOM05D000805 ORTHO05D000624 1.1e-11 75.9 110 45.5
Haze_18596 Corylus avellana HOM05D000805 ORTHO05D000624 1.4e-11 75.5 121 43.8
Migut.L01615 Erythranthe guttata HOM05D000805 ORTHO05D000624 1.4e-11 75.5 67 53.7
Manes.05G118400 Manihot esculenta HOM05D000805 ORTHO05D000624 1.4e-11 75.5 93 46.2
Nn3g17697 Nelumbo nucifera HOM05D000805 ORTHO05D000624 1.4e-11 75.5 68 52.9
PSO384G3992 Papaver somniferum HOM05D000805 ORTHO05D000624 1.4e-11 75.5 68 54.4
QL10p023095 Quercus lobata HOM05D000805 ORTHO05D000624 1.4e-11 75.5 140 37.1
SGA_v2.0_scaffold94G28615 Striga asiatica HOM05D000805 ORTHO05D000624 1.8e-11 75.1 68 52.9
RcHm_v2.0_Chr7g0184461 Rosa chinensis HOM05D000805 ORTHO05D000624 2.4e-11 74.7 68 52.9
CAN.G438.110 Capsicum annuum HOM05D000805 ORTHO05D000624 3.1e-11 74.3 128 38.3
COL.COLO4_22703 Corchorus olitorius HOM05D000805 ORTHO05D000624 3.1e-11 74.3 121 40.5
PGSC0003DMG400005620 Solanum tuberosum HOM05D000805 ORTHO05D000624 3.1e-11 74.3 127 41.7
Nitab4.5_0003716g0070 Nicotiana tabacum HOM05D000805 ORTHO05D000624 4.1e-11 73.9 122 41.8
TAR622G1246 Trochodendron aralioides HOM05D000805 ORTHO05D000624 4.1e-11 73.9 124 37.1
GSVIVG01008228001 Vitis vinifera HOM05D000805 ORTHO05D000624 4.1e-11 73.9 121 41.3
TAR371G0521 Trochodendron aralioides HOM05D000805 ORTHO05D000624 5.3e-11 73.6 68 51.5
PSO339G2444 Papaver somniferum HOM05D000805 ORTHO05D000624 9.1e-11 72.8 68 52.9
Prupe.5G216500 Prunus persica HOM05D000805 ORTHO05D000624 9.1e-11 72.8 68 51.5
Oeu027135.1 Olea europaea HOM05D000805 ORTHO05D000624 1.2e-10 72.4 93 44.1
QL05p063059 Quercus lobata HOM05D000805 ORTHO05D000624 1.2e-10 72.4 106 39.6
RhsimUnG0106300 Rhododendron simsii HOM05D000805 ORTHO05D000624 1.2e-10 72.4 67 53.7
Lalb_Chr07g0178551 Lupinus albus HOM05D000805 ORTHO05D000624 1.5e-10 72.0 92 46.7
EL10Ac5g11243 Beta vulgaris HOM05D000805 ORTHO05D000624 2.0e-10 71.6 117 37.6
Gohir.A11G007500 Gossypium hirsutum HOM05D000805 ORTHO05D000624 2.0e-10 71.6 97 43.3
Gohir.D11G006600 Gossypium hirsutum HOM05D000805 ORTHO05D000624 2.0e-10 71.6 97 44.3
Ca_02660_v3 Cicer arietinum L. HOM05D000805 ORTHO05D000624 4.5e-10 70.5 67 50.7
Gorai.007G007900 Gossypium raimondii HOM05D000805 ORTHO05D000624 4.5e-10 70.5 97 43.3
Dinv36897 Davidia involucrata HOM05D000805 ORTHO05D000624 5.9e-10 70.1 125 41.6
Manes.01G021400 Manihot esculenta HOM05D000805 ORTHO05D000624 5.9e-10 70.1 56 60.7
CANSAT56G2119 Cannabis sativa HOM05D000805 ORTHO05D000624 7.7e-10 69.7 107 44.9
Aqoxy3G00383 Aquilegia oxysepala HOM05D000805 ORTHO05D000624 1.0e-09 69.3 65 52.3
HanXRQChr05g0153271 Helianthus annuus HOM05D000805 ORTHO05D000624 1.0e-09 69.3 67 53.7
Sabra15G0076100 Salix brachista HOM05D000805 ORTHO05D000624 1.0e-09 69.3 110 44.5
MBI10_g08548_MAGBIO Magnolia biondii HOM05D000805 ORTHO05D000624 1.3e-09 68.9 68 50.0
MD06G1210400 Malus domestica HOM05D000805 ORTHO05D000624 1.3e-09 68.9 127 38.6
CDE06G1043 Ceratophyllum demersum HOM05D000805 ORTHO05D000624 1.7e-09 68.6 68 50.0
FAN08G0915 Fragaria x ananassa HOM05D000805 ORTHO05D000624 2.2e-09 68.2 189 30.7
Lj1g0022824 Lotus japonicus HOM05D000805 ORTHO05D000624 2.2e-09 68.2 68 51.5
Potri.012G059400 Populus trichocarpa HOM05D000805 ORTHO05D000624 2.2e-09 68.2 114 41.2
PGR044G2217 Punica granatum HOM05D000805 ORTHO05D000624 2.9e-09 67.8 73 46.6
Lsat_1_v5_gn_5_24340 Lactuca sativa HOM05D000805 ORTHO05D000624 3.8e-09 67.4 120 40.8
Sabra12G0042600 Salix brachista HOM05D000805 ORTHO05D000624 3.8e-09 67.4 116 39.7
ECA246G0147 Erigeron canadensis HOM05D000805 ORTHO05D000624 5.0e-09 67.0 67 50.7
FvH4_5g12770 Fragaria vesca HOM05D000805 ORTHO05D000624 5.0e-09 67.0 189 30.7
DCAR_023179 Daucus carota HOM05D000805 ORTHO05D000624 6.5e-09 66.6 67 49.3
FAN18G2577 Fragaria x ananassa HOM05D000805 ORTHO05D000624 6.5e-09 66.6 189 30.7
AL3G31880 Arabidopsis lyrata HOM05D000805 ORTHO05D000624 8.5e-09 66.2 92 43.5
AL451U10010 Arabidopsis lyrata HOM05D000805 ORTHO05D000624 8.5e-09 66.2 92 43.5
FAN18G2287 Fragaria x ananassa HOM05D000805 ORTHO05D000624 1.1e-08 65.9 189 30.2
MD14G1221100 Malus domestica HOM05D000805 ORTHO05D000624 1.4e-08 65.5 129 38.0
FAN13G0318 Fragaria x ananassa HOM05D000805 ORTHO05D000624 1.9e-08 65.1 189 30.2
Glyma.06G209900 Glycine max HOM05D000805 ORTHO05D000624 1.9e-08 65.1 68 47.1
Aa31LG8G5430 Aethionema arabicum HOM05D000805 ORTHO05D000624 2.5e-08 64.7 92 44.6
CDE07G0568 Ceratophyllum demersum HOM05D000805 ORTHO05D000624 2.5e-08 64.7 68 47.1
ClCG06G015070 Citrullus lanatus HOM05D000805 ORTHO05D000624 2.5e-08 64.7 109 35.8
Gohir.D01G141400 Gossypium hirsutum HOM05D004417 ORTHO05D000624 3.2e-08 64.3 68 42.6
Gorai.002G174000 Gossypium raimondii HOM05D004417 ORTHO05D000624 3.2e-08 64.3 68 42.6
TPR.G26761 Trifolium pratense HOM05D000805 ORTHO05D000624 3.2e-08 64.3 38 81.6
Carub.0003s1835 Capsella rubella HOM05D000805 ORTHO05D000624 4.2e-08 63.9 92 42.4
CARHR093950 Cardamine hirsuta HOM05D000805 ORTHO05D000624 4.2e-08 63.9 92 41.3
Gohir.D12G265400 Gossypium hirsutum HOM05D000805 ORTHO05D000624 4.2e-08 63.9 92 41.3
Gorai.008G285100 Gossypium raimondii HOM05D000805 ORTHO05D000624 4.2e-08 63.9 92 41.3
AT3G18570 Arabidopsis thaliana HOM05D000805 ORTHO05D000624 5.5e-08 63.5 92 42.4
MELO3C017282.2 Cucumis melo HOM05D000805 ORTHO05D000624 7.2e-08 63.2 109 33.9
CsaV3_1G003570 Cucumis sativus L. HOM05D000805 ORTHO05D000624 7.2e-08 63.2 110 33.6
Gohir.A12G265200 Gossypium hirsutum HOM05D000805 ORTHO05D000624 7.2e-08 63.2 92 42.4
Nitab4.5_0007105g0030 Nicotiana tabacum HOM05D000805 ORTHO05D000624 7.2e-08 63.2 60 58.3
Duzib205G0938 Durio zibethinus HOM05D000805 ORTHO05D000624 9.4e-08 62.8 92 40.2
Nitab4.5_0001432g0070 Nicotiana tabacum HOM05D000805 ORTHO05D000624 9.4e-08 62.8 60 58.3
Sp3g16650 Schrenkiella parvula HOM05D000805 ORTHO05D000624 1.2e-07 62.4 90 43.3
Gohir.A01G148918 Gossypium hirsutum HOM05D000805 ORTHO05D000624 1.6e-07 62.0 81 37.0
Duzib068G0145 Durio zibethinus HOM05D000805 ORTHO05D000624 2.1e-07 61.6 151 33.1
Gohir.A09G045000 Gossypium hirsutum HOM05D000805 ORTHO05D000624 2.1e-07 61.6 90 36.7
BcaC07g37088 Brassica carinata HOM05D000805 ORTHO05D000624 2.7e-07 61.2 67 47.8
BolC1t04527H Brassica oleracea HOM05D000805 ORTHO05D000624 2.7e-07 61.2 92 41.3
TPR.G28083 Trifolium pratense HOM05D000073 ORTHO05D410491 2.7e-07 61.2 61 54.1
C08p04520 Brassica napus HOM05D000805 ORTHO05D000624 3.6e-07 60.8 67 47.8
BolC8t47257H Brassica oleracea HOM05D000805 ORTHO05D000624 3.6e-07 60.8 67 47.8
Gohir.D09G046500 Gossypium hirsutum HOM05D000805 ORTHO05D000624 3.6e-07 60.8 90 36.7
Gorai.006G063600 Gossypium raimondii HOM05D000805 ORTHO05D000624 3.6e-07 60.8 90 36.7
Peaxi162Scf00013g00094 Petunia axillaris HOM05D000805 ORTHO05D000624 3.6e-07 60.8 60 56.7
Os05g0576700 Oryza sativa ssp. japonica HOM05D000805 ORTHO05D000624 4.7e-07 60.5 95 37.9
A05p31050 Brassica napus HOM05D000805 ORTHO05D000624 6.1e-07 60.1 54 57.4
BraA05t21947Z Brassica rapa HOM05D000805 ORTHO05D000624 6.1e-07 60.1 54 57.4
AUR62036943 Chenopodium quinoa HOM05D000805 ORTHO05D000624 7.9e-07 59.7 64 46.9
Thhalv10021947m.g Eutrema salsugineum HOM05D000805 ORTHO05D000624 7.9e-07 59.7 92 40.2
BcaB04g17374 Brassica carinata HOM05D000805 ORTHO05D000624 1.0e-06 59.3 67 47.8
BolC5t33433H Brassica oleracea HOM05D000805 ORTHO05D000624 1.0e-06 59.3 92 43.5
Thhalv10011990m.g Eutrema salsugineum HOM05D000805 ORTHO05D000624 1.4e-06 58.9 113 35.4
PGR083G2122 Punica granatum HOM05D000805 ORTHO05D000624 1.4e-06 58.9 68 44.1
Thecc.09G049000 Theobroma cacao HOM05D000805 ORTHO05D000624 1.4e-06 58.9 70 44.3
Actinidia31034 Actinidia chinensis HOM05D005660 ORTHO05D009563 1.8e-06 58.5 56 48.2
Dinv23401 Davidia involucrata HOM05D000805 ORTHO05D000624 1.8e-06 58.5 70 45.7
Lj1P975T23 Lonicera japonica HOM05D000805 ORTHO05D000624 1.8e-06 58.5 94 38.3
BraA08t32453Z Brassica rapa HOM05D000805 ORTHO05D000624 2.3e-06 58.2 67 46.3
Lsat_1_v5_gn_8_9800 Lactuca sativa HOM05D000805 ORTHO05D000624 2.3e-06 58.2 70 44.3
Oeu021666.1 Olea europaea HOM05D000805 ORTHO05D000624 2.3e-06 58.2 72 41.7
TAR626G0937 Trochodendron aralioides HOM05D000805 ORTHO05D000624 2.3e-06 58.2 109 38.5
TAR626G1162 Trochodendron aralioides HOM05D000805 ORTHO05D000624 2.3e-06 58.2 109 38.5
BcaB06g25905 Brassica carinata HOM05D000805 ORTHO05D000624 3.0e-06 57.8 92 41.3
BcaC05g28600 Brassica carinata HOM05D000805 ORTHO05D000624 3.0e-06 57.8 92 42.4
C05p47030 Brassica napus HOM05D000805 ORTHO05D000624 3.0e-06 57.8 92 42.4
CARHR039000 Cardamine hirsuta HOM05D000805 ORTHO05D000624 3.0e-06 57.8 97 38.1
Cc02_g04750 Coffea canephora HOM05D000805 ORTHO05D000624 3.0e-06 57.8 70 42.9
AL1G55860 Arabidopsis lyrata HOM05D001087 ORTHO05D000624 3.9e-06 57.4 67 47.8
C01p45660 Brassica napus HOM05D000805 ORTHO05D000624 3.9e-06 57.4 89 41.6
HanXRQChr05g0138621 Helianthus annuus HOM05D000805 ORTHO05D000624 3.9e-06 57.4 70 44.3
Sp1g35900 Schrenkiella parvula HOM05D000805 ORTHO05D000624 3.9e-06 57.4 146 32.9
Dinv16870 Davidia involucrata HOM05D000124 ORTHO05D000056 5.1e-06 57.0 70 42.9
Eucgr.C00618 Eucalyptus grandis HOM05D000805 ORTHO05D000624 5.1e-06 57.0 67 44.8
Oeu006088.1 Olea europaea HOM05D000805 ORTHO05D000624 5.1e-06 57.0 70 41.4
Gohir.D06G089800 Gossypium hirsutum HOM05D000805 ORTHO05D000624 6.7e-06 56.6 70 42.9
Gorai.010G103700 Gossypium raimondii HOM05D000805 ORTHO05D000624 6.7e-06 56.6 70 42.9
Lj2P226T37 Lonicera japonica HOM05D000805 ORTHO05D000624 6.7e-06 56.6 55 49.1
Aa31LG10G4940 Aethionema arabicum HOM05D000805 ORTHO05D000624 8.8e-06 56.2 67 44.8
A03p40720 Brassica napus HOM05D000805 ORTHO05D000624 8.8e-06 56.2 92 41.3
BraA03t13229Z Brassica rapa HOM05D000805 ORTHO05D000624 8.8e-06 56.2 92 41.3
COL.COLO4_21008 Corchorus olitorius HOM05D000805 ORTHO05D000624 8.8e-06 56.2 70 41.4
Gohir.A06G090900 Gossypium hirsutum HOM05D000805 ORTHO05D000624 8.8e-06 56.2 70 42.9
MBI04_g06987_MAGBIO Magnolia biondii HOM05D000805 ORTHO05D000624 8.8e-06 56.2 68 44.1
TWI23G0546 Tripterygium wilfordii HOM05D000805 ORTHO05D000624 8.8e-06 56.2 70 44.3
unitig_60.g25806 Utricularia gibba HOM05D000805 ORTHO05D000624 8.8e-06 56.2 67 43.3


User provided reference genes

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