Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G32397 Trifolium pratense HOM05D005360 ORTHO05D006501 5.0e-151 537.7 268 100.0
Lj3g0014716 Lotus japonicus HOM05D005360 ORTHO05D006501 3.4e-115 418.7 272 77.6
Medtr2g084545 Medicago truncatula HOM05D005360 ORTHO05D006501 3.4e-115 418.7 269 78.8
Psat5g252440 Pisum sativum HOM05D005360 ORTHO05D006501 2.2e-114 416.0 270 75.6
Glyma.13G219600 Glycine max HOM05D005360 ORTHO05D006501 4.9e-114 414.8 271 76.4
Ca_01695_v3 Cicer arietinum L. HOM05D005360 ORTHO05D006501 1.4e-113 413.3 269 79.6
Phvul.006G166300 Phaseolus vulgaris HOM05D005360 ORTHO05D006501 7.0e-113 411.0 269 75.5
Lalb_Chr24g0395031 Lupinus albus HOM05D005360 ORTHO05D006501 8.6e-103 377.5 272 69.5
arahy.Tifrunner.gnm1.ann1.9X9VA5 Arachis hypogaea HOM05D005360 ORTHO05D006501 5.3e-92 341.7 266 67.7
Thecc.09G295200 Theobroma cacao HOM05D005360 ORTHO05D006501 7.6e-91 337.8 234 70.9
RcHm_v2.0_Chr5g0056101 Rosa chinensis HOM05D005360 ORTHO05D006501 1.9e-89 333.2 277 61.7
Eucgr.B03910 Eucalyptus grandis HOM05D005360 ORTHO05D006501 3.2e-89 332.4 239 68.6
Manes.11G154700 Manihot esculenta HOM05D005360 ORTHO05D006501 4.2e-89 332.0 238 68.5
Ciclev10029076m.g Citrus clementina HOM05D005360 ORTHO05D006501 1.2e-88 330.5 241 66.0
FvH4_3g30230 Fragaria vesca HOM05D005360 ORTHO05D006501 1.2e-88 330.5 274 60.9
SGA_v2.0_scaffold193G40720 Striga asiatica HOM05D005360 ORTHO05D006501 1.3e-87 327.0 241 65.6
Rhsim13G0102900 Rhododendron simsii HOM05D005360 ORTHO05D006501 1.7e-87 326.6 236 67.8
Hund07728 Selenicereus undatus HOM05D005360 ORTHO05D006501 1.7e-87 326.6 273 60.4
Hma1.2p1_0051F.1_g029700 Hydrangea macrophylla HOM05D005360 ORTHO05D006501 5.1e-87 325.1 260 62.3
Haze_23502 Corylus avellana HOM05D005360 ORTHO05D006501 6.6e-87 324.7 279 60.6
arahy.Tifrunner.gnm1.ann1.E5WW1G Arachis hypogaea HOM05D005360 ORTHO05D004899 1.9e-86 323.2 219 74.4
Dinv29396 Davidia involucrata HOM05D005360 ORTHO05D006501 5.6e-86 321.6 256 61.7
Cc04_g14880 Coffea canephora HOM05D005360 ORTHO05D006501 7.3e-86 321.2 263 59.7
vmacro03239 Vaccinium macrocarpon HOM05D005360 ORTHO05D006501 9.6e-86 320.9 256 63.7
MSTRG.21078 Avicennia marina HOM05D005360 ORTHO05D006501 1.6e-85 320.1 238 64.7
CANSAT64G2904 Cannabis sativa HOM05D005360 ORTHO05D006501 1.6e-85 320.1 244 64.8
CANSAT64G2995 Cannabis sativa HOM05D005360 ORTHO05D006501 1.6e-85 320.1 244 64.8
Lj1A216T24 Lonicera japonica HOM05D005360 ORTHO05D006501 3.6e-85 318.9 237 66.7
Nitab4.5_0000442g0050 Nicotiana tabacum HOM05D005360 ORTHO05D006501 3.6e-85 318.9 247 65.2
TWI31G0773 Tripterygium wilfordii HOM05D005360 ORTHO05D006501 3.6e-85 318.9 272 59.9
CSS0014580 Camellia sinensis var. sinensis HOM05D005360 ORTHO05D006501 4.8e-85 318.5 237 67.5
QL01p014311 Quercus lobata HOM05D005360 ORTHO05D006501 4.8e-85 318.5 234 67.9
GSVIVG01031434001 Vitis vinifera HOM05D005360 ORTHO05D006501 4.8e-85 318.5 238 65.5
CiPaw.14G105400 Carya illinoinensis HOM05D005360 ORTHO05D006501 1.1e-84 317.4 270 60.4
CAN.G546.64 Capsicum annuum HOM05D005360 ORTHO05D006501 1.4e-84 317.0 238 66.0
Atru.chr3.3432 Acer truncatum HOM05D005360 ORTHO05D006501 1.8e-84 316.6 238 65.5
Migut.D02306 Erythranthe guttata HOM05D005360 ORTHO05D006501 1.8e-84 316.6 234 65.4
MD11G1152100 Malus domestica HOM05D005360 ORTHO05D006501 3.1e-84 315.8 240 65.8
Nn6g35157 Nelumbo nucifera HOM05D005360 ORTHO05D006501 4.0e-84 315.5 232 67.7
TAR633G1180 Trochodendron aralioides HOM05D005360 ORTHO05D006501 1.2e-83 313.9 229 65.9
MD03G1130500 Malus domestica HOM05D005360 ORTHO05D006501 2.0e-83 313.2 265 61.9
DCAR_015495 Daucus carota HOM05D005360 ORTHO05D006501 5.8e-83 311.6 232 65.5
Sc21g0004290 Simmondsia chinensis HOM05D005360 ORTHO05D006501 1.3e-82 310.5 232 66.8
Ah.01g016120 Amaranthus hybridus HOM05D005360 ORTHO05D006501 1.7e-82 310.1 276 58.3
MBI01_g19099_MAGBIO Magnolia biondii HOM05D005360 ORTHO05D006501 2.2e-82 309.7 234 63.7
HanXRQChr13g0403531 Helianthus annuus HOM05D005360 ORTHO05D006501 2.9e-82 309.3 232 65.9
PGSC0003DMG400000427 Solanum tuberosum HOM05D005360 ORTHO05D006501 3.8e-82 308.9 258 60.5
Sabra09G0000500 Salix brachista HOM05D005360 ORTHO05D006501 4.2e-81 305.4 234 63.7
FAN11G3336 Fragaria x ananassa HOM05D005360 ORTHO05D006501 5.4e-81 305.1 274 58.0
Potri.009G002000 Populus trichocarpa HOM05D005360 ORTHO05D006501 1.2e-80 303.9 234 63.7
Sopen11g026340 Solanum pennellii HOM05D005360 ORTHO05D006501 1.2e-80 303.9 238 63.0
THA.LOC104826399 Tarenaya hassleriana HOM05D005360 ORTHO05D006501 2.7e-80 302.8 248 62.5
ATR0665G582 Amborella trichopoda HOM05D005360 ORTHO05D006501 4.6e-80 302.0 226 62.4
Solyc11g066610.2 Solanum lycopersicum HOM05D005360 ORTHO05D006501 7.9e-80 301.2 259 58.7
FAN21G0874 Fragaria x ananassa HOM05D005360 ORTHO05D006501 1.0e-79 300.8 274 56.9
Gorai.001G118400 Gossypium raimondii HOM05D005360 ORTHO05D006501 1.3e-79 300.4 235 62.6
AT1G08220 Arabidopsis thaliana HOM05D005360 ORTHO05D006501 2.3e-79 299.7 231 62.8
EL10Ac9g21036 Beta vulgaris HOM05D005360 ORTHO05D006501 2.3e-79 299.7 234 62.8
Actinidia24162 Actinidia chinensis HOM05D005360 ORTHO05D006501 3.9e-79 298.9 219 65.3
Gohir.D07G110200 Gossypium hirsutum HOM05D005360 ORTHO05D006501 3.9e-79 298.9 235 62.1
Thhalv10008429m.g Eutrema salsugineum HOM05D005360 ORTHO05D006501 5.1e-79 298.5 231 62.3
CARHR008050 Cardamine hirsuta HOM05D005360 ORTHO05D006501 8.7e-79 297.7 231 62.8
Aqoxy1G01027 Aquilegia oxysepala HOM05D005360 ORTHO05D006501 1.3e-77 293.9 231 61.9
A08p35270 Brassica napus HOM05D005360 ORTHO05D006501 3.7e-77 292.4 231 61.0
BraA08t35436Z Brassica rapa HOM05D005360 ORTHO05D006501 3.7e-77 292.4 231 61.0
C08p03560 Brassica napus HOM05D005360 ORTHO05D006501 4.8e-77 292.0 231 61.5
C08p50100 Brassica napus HOM05D005360 ORTHO05D006501 4.8e-77 292.0 253 58.1
BolC8t52540H Brassica oleracea HOM05D005360 ORTHO05D006501 4.8e-77 292.0 253 58.1
AL1G18630 Arabidopsis lyrata HOM05D005360 ORTHO05D006501 8.1e-77 291.2 231 60.6
THA.LOC104800565 Tarenaya hassleriana HOM05D005360 ORTHO05D006501 1.1e-76 290.8 243 59.7
PGR102G1574 Punica granatum HOM05D005360 ORTHO05D006501 1.8e-76 290.0 263 56.7
BolC8t47160H Brassica oleracea HOM05D005360 ORTHO05D006501 2.4e-76 289.7 231 61.5
MBI01_g31369_MAGBIO Magnolia biondii HOM05D005360 ORTHO05D006501 2.4e-76 289.7 234 62.0
PSO339G5504 Papaver somniferum HOM05D005360 ORTHO05D006501 2.4e-76 289.7 240 60.8
PSO063G2369 Papaver somniferum HOM05D005360 ORTHO05D006501 3.1e-76 289.3 240 60.8
Sp1g06870 Schrenkiella parvula HOM05D005360 ORTHO05D006501 4.0e-76 288.9 231 60.2
Aa31LG1G18020 Aethionema arabicum HOM05D005360 ORTHO05D006501 1.5e-75 287.0 225 62.2
Lsat_1_v5_gn_6_42160 Lactuca sativa HOM05D005360 ORTHO05D006501 2.0e-75 286.6 269 55.8
CDE09G0858 Ceratophyllum demersum HOM05D005360 ORTHO05D006501 3.4e-75 285.8 231 60.2
Carub.0001s0758 Capsella rubella HOM05D005360 ORTHO05D006501 1.7e-74 283.5 231 58.4
BcaC07g42518 Brassica carinata HOM05D005360 ORTHO05D006501 2.9e-74 282.7 231 60.6
AUR62031793 Chenopodium quinoa HOM05D005360 ORTHO05D006501 1.4e-73 280.4 258 57.0
Sed0004275 Sechium edule HOM05D005360 ORTHO05D006501 2.5e-73 279.6 204 65.7
unitig_899.g14961 Utricularia gibba HOM05D005360 ORTHO05D006501 1.9e-70 270.0 245 58.0
Gohir.A07G106300 Gossypium hirsutum HOM05D005360 ORTHO05D006501 2.1e-69 266.5 225 59.1
Peaxi162Scf00150g00315 Petunia axillaris HOM05D005360 ORTHO05D006501 2.1e-69 266.5 223 60.5
MELO3C021472.2 Cucumis melo HOM05D005360 ORTHO05D006501 8.2e-69 264.6 196 64.8
CsaV3_6G014530 Cucumis sativus L. HOM05D005360 ORTHO05D006501 1.1e-68 264.2 196 63.8
COL.COLO4_19249 Corchorus olitorius HOM05D000737 ORTHO05D000581 1.8e-68 263.5 238 58.0
SalBow6G0303 Salvia bowleyana HOM05D005360 ORTHO05D006501 1.9e-65 253.4 221 57.9
BcaB03g13345 Brassica carinata HOM05D005360 ORTHO05D006501 3.2e-65 252.7 251 52.2
Duzib168G1167 Durio zibethinus HOM05D005360 ORTHO05D006501 4.2e-65 252.3 185 66.5
HPP92_015033 Vanilla planifolia HOM05D005360 ORTHO05D006501 2.7e-64 249.6 272 50.0
Os05g0176500 Oryza sativa ssp. japonica HOM05D005360 ORTHO05D006501 2.3e-63 246.5 242 52.9
Zm00001eb345720 Zea mays HOM05D005360 ORTHO05D006501 4.3e-62 242.3 239 50.6
Gohir.A07G000166 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.0e-58 231.1 186 61.3
VMungo0540G0253 Vigna mungo HOM05D005360 ORTHO05D006501 1.7e-58 230.3 178 67.4
TAR633G1639 Trochodendron aralioides HOM05D005360 ORTHO05D006501 5.0e-58 228.8 219 54.3
SHI06160 Sapria himalayana HOM05D005360 ORTHO05D006501 2.5e-57 226.5 218 54.1
Gohir.1Z049633 Gossypium hirsutum HOM05D005360 ORTHO05D006501 7.2e-57 224.9 181 61.9
HPP92_015112 Vanilla planifolia HOM05D005360 ORTHO05D006501 9.4e-57 224.6 223 52.0
Prupe.6G115300 Prunus persica HOM05D005360 ORTHO05D006501 6.9e-52 208.4 160 64.4
Gohir.A05G054800 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.5e-46 190.7 219 50.2
Hma1.2p1_0051F.1_g029710 Hydrangea macrophylla HOM05D005360 ORTHO05D006501 4.1e-44 182.6 122 69.7
Gohir.A02G097303 Gossypium hirsutum HOM05D005360 ORTHO05D006501 3.8e-42 176.0 215 49.3
Oeu026987.1 Olea europaea HOM05D005360 ORTHO05D006501 8.8e-39 164.9 120 64.2
SMO116G0134 Selaginella moellendorffii HOM05D005360 ORTHO05D006501 5.9e-35 152.1 216 35.6
Gohir.A10G063101 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.8e-31 140.6 162 46.9
Cpa.g.sc2403.1 Carica papaya HOM05D005360 ORTHO05D006501 5.7e-30 135.6 135 48.9
CiPaw.13G142900 Carya illinoinensis HOM05D005360 ORTHO05D006501 9.7e-30 134.8 125 55.2
CiPaw.13G143100 Carya illinoinensis HOM05D005360 ORTHO05D006501 2.2e-29 133.7 116 57.8
Gohir.A09G043650 Gossypium hirsutum HOM05D005360 ORTHO05D006501 4.5e-27 125.9 118 51.7
Gohir.A11G191650 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.3e-26 124.4 249 36.5
FAN09G1017 Fragaria x ananassa HOM05D005360 ORTHO05D006501 1.6e-24 117.5 112 55.4
FAN09G0332 Fragaria x ananassa HOM05D005360 ORTHO05D006501 3.4e-22 109.8 74 67.6
Gohir.A06G034300 Gossypium hirsutum HOM05D005360 ORTHO05D006501 7.5e-22 108.6 101 54.5
AUR62023988 Chenopodium quinoa HOM05D005360 ORTHO05D006501 2.2e-21 107.1 86 60.5
Gohir.A06G100002 Gossypium hirsutum HOM05D005360 ORTHO05D006501 7.0e-20 102.1 71 71.8
FAN04G1623 Fragaria x ananassa HOM05D005360 ORTHO05D006501 1.9e-17 94.0 62 71.0
Gohir.A05G334300 Gossypium hirsutum HOM05D005360 ORTHO05D006501 2.5e-17 93.6 83 55.4
Gohir.A06G038884 Gossypium hirsutum HOM05D005360 ORTHO05D006501 3.3e-17 93.2 121 46.3
Zm00001eb137350 Zea mays HOM05D005360 ORTHO05D006501 5.2e-15 85.9 83 47.0
BcaC07g37801 Brassica carinata HOM05D005360 ORTHO05D006501 1.2e-14 84.7 98 43.9
SEGI_40723 Sequoiadendron giganteum HOM05D005360 ORTHO05D006501 7.5e-14 82.0 91 42.9
Gohir.A06G133300 Gossypium hirsutum HOM05D005360 ORTHO05D006501 2.8e-13 80.1 99 45.5
Eucgr.L03607 Eucalyptus grandis HOM05D005360 ORTHO05D006501 6.3e-13 79.0 66 53.0
Gohir.1Z049508 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.6e-11 74.3 88 45.5
Gohir.A11G000150 Gossypium hirsutum HOM05D005360 ORTHO05D026494 5.9e-11 72.4 72 47.2
Cfa022886 Carpinus fangiana HOM05D005360 ORTHO05D006501 2.1e-08 63.9 213 27.7
Gohir.A02G000100 Gossypium hirsutum HOM05D003958 ORTHO05D005454 1.4e-07 61.2 44 70.5
Gohir.A02G089101 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.4e-07 61.2 72 44.4
Actinidia07196 Actinidia chinensis HOM05D005360 ORTHO05D006501 1.5e-06 57.8 146 28.8
Zm00001eb228200 Zea mays HOM05D005360 ORTHO05D006501 5.8e-06 55.8 87 36.8
Zm00001eb350410 Zea mays HOM05D005360 ORTHO05D006501 5.8e-06 55.8 71 39.4
Zm00001eb410990 Zea mays HOM05D005360 ORTHO05D006501 5.8e-06 55.8 60 40.0
Zm00001eb229280 Zea mays HOM05D005360 ORTHO05D006501 7.5e-06 55.5 87 36.8


User provided reference genes

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