Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G3239 Trifolium pratense HOM05D003735 ORTHO05D004550 1.9e-245 852.0 419 100.0
Medtr1g107235 Medicago truncatula HOM05D003735 ORTHO05D004550 9.3e-229 796.6 419 92.4
Ca_11068_v3 Cicer arietinum L. HOM05D003735 ORTHO05D004550 4.6e-228 794.3 417 91.6
Psat6g217600 Pisum sativum HOM05D003735 ORTHO05D004550 1.3e-227 792.7 419 91.4
arahy.Tifrunner.gnm1.ann1.28YLK9 Arachis hypogaea HOM05D003735 ORTHO05D004550 2.0e-223 778.9 415 89.2
arahy.Tifrunner.gnm1.ann1.SBY3PD Arachis hypogaea HOM05D003735 ORTHO05D004550 4.5e-223 777.7 415 88.9
Phvul.007G040800 Phaseolus vulgaris HOM05D003735 ORTHO05D004550 1.0e-219 766.5 416 87.3
VMungo0720G1863 Vigna mungo HOM05D003735 ORTHO05D004550 5.1e-219 764.2 416 87.0
Glyma.20G129700 Glycine max HOM05D003735 ORTHO05D004550 3.1e-216 755.0 417 86.8
Lj5g0001181 Lotus japonicus HOM05D003735 ORTHO05D004550 3.1e-216 755.0 416 86.3
Glyma.10G261300 Glycine max HOM05D003735 ORTHO05D004550 4.1e-216 754.6 417 86.3
Lalb_Chr02g0145261 Lupinus albus HOM05D003735 ORTHO05D004550 2.0e-215 752.3 416 86.5
Phvul.007G040700 Phaseolus vulgaris HOM05D003735 ORTHO05D004550 2.0e-215 752.3 416 86.1
arahy.Tifrunner.gnm1.ann1.HR3ZI9 Arachis hypogaea HOM05D003735 ORTHO05D004550 1.0e-214 750.0 414 86.0
Psat6g217400 Pisum sativum HOM05D003735 ORTHO05D004550 1.0e-214 750.0 419 84.7
Ca_11064_v3 Cicer arietinum L. HOM05D003735 ORTHO05D004550 1.0e-211 740.0 417 84.4
arahy.Tifrunner.gnm1.ann1.678ZZJ Arachis hypogaea HOM05D003735 ORTHO05D004550 1.3e-209 733.0 447 79.9
TPR.G19078 Trifolium pratense HOM05D003735 ORTHO05D004550 1.2e-207 726.5 425 83.3
COL.COLO4_32583 Corchorus olitorius HOM05D003735 ORTHO05D004550 1.4e-205 719.5 413 81.6
Thecc.02G109200 Theobroma cacao HOM05D003735 ORTHO05D004550 2.5e-205 718.8 412 81.1
Gohir.A12G021500 Gossypium hirsutum HOM05D003735 ORTHO05D004550 3.6e-204 714.9 414 80.9
Dinv15769 Davidia involucrata HOM05D003735 ORTHO05D004550 1.8e-203 712.6 411 81.0
Gohir.D12G022000 Gossypium hirsutum HOM05D003735 ORTHO05D004550 6.7e-203 710.7 413 81.1
Gorai.008G022500 Gossypium raimondii HOM05D003735 ORTHO05D004550 6.7e-203 710.7 413 81.1
QL11p033367 Quercus lobata HOM05D003735 ORTHO05D004550 1.5e-202 709.5 415 80.5
Cfa004592 Carpinus fangiana HOM05D003735 ORTHO05D004550 3.3e-202 708.4 414 81.4
CANSAT25G2742 Cannabis sativa HOM05D003735 ORTHO05D004550 5.7e-202 707.6 413 80.4
Ciclev10028518m.g Citrus clementina HOM05D003735 ORTHO05D004550 1.7e-201 706.1 414 79.7
CiPaw.05G012200 Carya illinoinensis HOM05D003735 ORTHO05D004550 2.8e-201 705.3 416 78.8
Duzib132G0856 Durio zibethinus HOM05D003735 ORTHO05D004550 3.7e-201 704.9 435 77.2
CSS0013486 Camellia sinensis var. sinensis HOM05D003735 ORTHO05D004550 8.2e-201 703.7 411 79.6
CiPaw.05G012300 Carya illinoinensis HOM05D003735 ORTHO05D004550 8.2e-201 703.7 416 79.1
Potri.001G299700 Populus trichocarpa HOM05D003735 ORTHO05D004550 8.2e-201 703.7 414 78.7
Sabra09G0073100 Salix brachista HOM05D003735 ORTHO05D004550 1.1e-200 703.4 414 79.2
Gorai.008G022400 Gossypium raimondii HOM05D003735 ORTHO05D004550 2.4e-200 702.2 413 80.4
Potri.009G094800 Populus trichocarpa HOM05D003735 ORTHO05D004550 2.4e-200 702.2 414 78.5
Actinidia00406 Actinidia chinensis HOM05D003735 ORTHO05D004550 5.3e-200 701.0 411 79.1
Manes.07G071100 Manihot esculenta HOM05D003735 ORTHO05D004550 7.0e-200 700.7 412 78.4
Duzib248G1182 Durio zibethinus HOM05D003735 ORTHO05D004550 9.1e-200 700.3 412 79.4
Prupe.8G136000 Prunus persica HOM05D003735 ORTHO05D004550 1.2e-199 699.9 414 80.2
Sabra09G0072900 Salix brachista HOM05D003735 ORTHO05D004550 1.2e-199 699.9 414 78.7
Cpa.g.sc106.101 Carica papaya HOM05D003735 ORTHO05D004550 2.0e-199 699.1 414 78.5
Rhsim11G0159400 Rhododendron simsii HOM05D003735 ORTHO05D004550 2.6e-199 698.7 411 78.6
Manes.07G071000 Manihot esculenta HOM05D003735 ORTHO05D004550 5.9e-199 697.6 413 78.5
Atru.chr5.2510 Acer truncatum HOM05D003735 ORTHO05D004550 7.7e-199 697.2 414 79.0
Eucgr.I01098 Eucalyptus grandis HOM05D003735 ORTHO05D004550 7.7e-199 697.2 414 78.3
Lj9A323T50 Lonicera japonica HOM05D003735 ORTHO05D004550 7.7e-199 697.2 414 78.7
Dinv42198 Davidia involucrata HOM05D003735 ORTHO05D004550 1.0e-198 696.8 411 79.3
Manes.07G071116 Manihot esculenta HOM05D003735 ORTHO05D004550 1.3e-198 696.4 412 78.4
ClCG05G010320 Citrullus lanatus HOM05D003735 ORTHO05D004550 1.7e-198 696.0 414 79.2
MD10G1098700 Malus domestica HOM05D003735 ORTHO05D004550 2.2e-198 695.7 414 80.2
Rhsim11G0159300 Rhododendron simsii HOM05D003735 ORTHO05D004550 2.2e-198 695.7 411 78.3
Haze_10183 Corylus avellana HOM05D003735 ORTHO05D004550 5.0e-198 694.5 414 79.0
GSVIVG01037915001 Vitis vinifera HOM05D003735 ORTHO05D004550 1.9e-197 692.6 413 78.7
Haze_10190 Corylus avellana HOM05D003735 ORTHO05D004550 3.2e-197 691.8 434 76.7
MD10G1147300 Malus domestica HOM05D003735 ORTHO05D004550 5.5e-197 691.0 414 80.0
Thecc.02G109600 Theobroma cacao HOM05D003735 ORTHO05D004550 1.6e-196 689.5 430 77.0
RcHm_v2.0_Chr2g0122061 Rosa chinensis HOM05D003735 ORTHO05D004550 6.1e-196 687.6 414 78.7
SalBow3G2544 Salvia bowleyana HOM05D003735 ORTHO05D004550 8.0e-196 687.2 410 76.8
RcHm_v2.0_Chr6g0254911 Rosa chinensis HOM05D003735 ORTHO05D004550 1.0e-195 686.8 414 78.7
Hma1.2p1_0796F.1_g219280 Hydrangea macrophylla HOM05D003735 ORTHO05D004550 5.2e-195 684.5 414 77.3
Migut.N01162 Erythranthe guttata HOM05D003735 ORTHO05D004550 6.7e-195 684.1 410 77.8
TPR.G3238 Trifolium pratense HOM05D003735 ORTHO05D004550 6.7e-195 684.1 343 97.1
vmacro01999 Vaccinium macrocarpon HOM05D003735 ORTHO05D004550 1.2e-194 683.3 428 75.7
MELO3C019550.2 Cucumis melo HOM05D003735 ORTHO05D004550 2.0e-194 682.6 415 76.4
SGA_v2.0_scaffold393G50713 Striga asiatica HOM05D003735 ORTHO05D004550 3.3e-194 681.8 412 76.5
FvH4_2g05040 Fragaria vesca HOM05D003735 ORTHO05D004550 9.7e-194 680.2 414 77.8
CsaV3_3G018170 Cucumis sativus L. HOM05D003735 ORTHO05D004550 1.7e-193 679.5 415 76.1
PGR142G3714 Punica granatum HOM05D003735 ORTHO05D004550 2.2e-193 679.1 418 77.5
FAN20G1457 Fragaria x ananassa HOM05D003735 ORTHO05D004550 2.8e-193 678.7 430 75.8
Cc02_g19320 Coffea canephora HOM05D003735 ORTHO05D004550 3.7e-193 678.3 411 76.6
Nn5g30431 Nelumbo nucifera HOM05D003735 ORTHO05D004550 4.8e-193 677.9 411 76.2
GSVIVG01037913001 Vitis vinifera HOM05D003735 ORTHO05D004550 8.2e-193 677.2 413 76.8
Lalb_Chr09g0319561 Lupinus albus HOM05D003735 ORTHO05D004550 1.4e-192 676.4 424 76.7
Prupe.7G233900 Prunus persica HOM05D003735 ORTHO05D004550 3.1e-192 675.2 414 76.1
THA.LOC104825376 Tarenaya hassleriana HOM05D003735 ORTHO05D004550 3.1e-192 675.2 414 76.6
AUR62025585 Chenopodium quinoa HOM05D003735 ORTHO05D004550 4.1e-192 674.9 417 75.8
TWI75G1082 Tripterygium wilfordii HOM05D003735 ORTHO05D004550 5.3e-192 674.5 412 76.7
MSTRG.5338 Avicennia marina HOM05D003735 ORTHO05D004550 7.0e-192 674.1 410 76.1
FAN24G3115 Fragaria x ananassa HOM05D003735 ORTHO05D004550 9.1e-192 673.7 414 77.1
Peaxi162Scf00016g02426 Petunia axillaris HOM05D003735 ORTHO05D004550 9.1e-192 673.7 412 77.7
BolC6t35561H Brassica oleracea HOM05D003735 ORTHO05D004550 1.6e-191 672.9 415 75.4
DCAR_021982 Daucus carota HOM05D003735 ORTHO05D004550 2.0e-191 672.5 412 77.2
C06p04320 Brassica napus HOM05D003735 ORTHO05D004550 2.7e-191 672.2 415 75.4
BcaC08g43148 Brassica carinata HOM05D003735 ORTHO05D004550 3.5e-191 671.8 415 75.4
EL10Ac9g22264 Beta vulgaris HOM05D003735 ORTHO05D004550 4.5e-191 671.4 417 76.0
Gohir.D12G022100 Gossypium hirsutum HOM05D003735 ORTHO05D004550 4.5e-191 671.4 413 77.7
Solyc01g107550.3 Solanum lycopersicum HOM05D003735 ORTHO05D004550 1.7e-190 669.5 411 76.9
TWI79G0069 Tripterygium wilfordii HOM05D003735 ORTHO05D004550 1.7e-190 669.5 412 76.5
A06p03780 Brassica napus HOM05D003735 ORTHO05D004550 5.0e-190 667.9 415 74.9
BraA06t23583Z Brassica rapa HOM05D003735 ORTHO05D004550 5.0e-190 667.9 415 74.7
Nitab4.5_0011634g0020 Nicotiana tabacum HOM05D003735 ORTHO05D004550 5.0e-190 667.9 425 75.8
PGSC0003DMG400025861 Solanum tuberosum HOM05D003735 ORTHO05D004550 5.0e-190 667.9 411 77.4
FAN15G3608 Fragaria x ananassa HOM05D003735 ORTHO05D004550 1.1e-189 666.8 430 74.7
FAN27G1495 Fragaria x ananassa HOM05D003735 ORTHO05D004550 1.1e-189 666.8 430 74.7
Sopen01g049750 Solanum pennellii HOM05D003735 ORTHO05D004550 1.9e-189 666.0 411 76.6
CAN.G606.4 Capsicum annuum HOM05D003735 ORTHO05D004550 4.2e-189 664.8 411 76.6
AUR62001369 Chenopodium quinoa HOM05D003735 ORTHO05D004550 7.2e-189 664.1 417 74.8
Sp1g36700 Schrenkiella parvula HOM05D003735 ORTHO05D004550 9.4e-189 663.7 415 74.2
Hund06312 Selenicereus undatus HOM05D003735 ORTHO05D004550 9.4e-189 663.7 411 75.4
CARHR039880 Cardamine hirsuta HOM05D003735 ORTHO05D004550 4.7e-188 661.4 416 74.5
BcaB07g33662 Brassica carinata HOM05D003735 ORTHO05D004550 8.0e-188 660.6 416 74.3
AT1G49820 Arabidopsis thaliana HOM05D003735 ORTHO05D004550 1.8e-187 659.4 417 75.1
Carub.0001s3903 Capsella rubella HOM05D003735 ORTHO05D004550 1.8e-187 659.4 415 75.4
Thhalv10011522m.g Eutrema salsugineum HOM05D003735 ORTHO05D004550 2.3e-187 659.1 415 74.5
MSTRG.27746 Avicennia marina HOM05D003735 ORTHO05D004550 3.4e-186 655.2 410 73.7
MBI16_g19654_MAGBIO Magnolia biondii HOM05D003735 ORTHO05D004550 7.5e-186 654.1 403 77.9
Aa31LG10G4250 Aethionema arabicum HOM05D003735 ORTHO05D004550 1.7e-185 652.9 417 73.9
AUR62039068 Chenopodium quinoa HOM05D003735 ORTHO05D004550 1.7e-185 652.9 416 73.8
HPP92_011617 Vanilla planifolia HOM05D003735 ORTHO05D004550 2.8e-185 652.1 412 75.0
Os04g0669800 Oryza sativa ssp. japonica HOM05D003735 ORTHO05D004550 5.4e-184 647.9 412 72.6
VMungo1215G1247 Vigna mungo HOM05D003735 ORTHO05D004550 5.4e-184 647.9 421 72.2
CDE02G0578 Ceratophyllum demersum HOM05D003735 ORTHO05D004550 1.6e-183 646.4 413 72.6
Oeu029527.5 Olea europaea HOM05D003735 ORTHO05D004550 1.6e-183 646.4 451 68.3
AL1G57300 Arabidopsis lyrata HOM05D003735 ORTHO05D004550 2.2e-182 642.5 415 73.5
HanXRQChr10g0296961 Helianthus annuus HOM05D003735 ORTHO05D004550 5.0e-182 641.3 407 74.0
ECA234G0132 Erigeron canadensis HOM05D003735 ORTHO05D004550 6.5e-182 641.0 413 73.8
MD10G1098200 Malus domestica HOM05D003735 ORTHO05D004550 1.1e-181 640.2 414 74.9
Zm00001eb433310 Zea mays HOM05D003735 ORTHO05D004550 1.5e-181 639.8 414 71.7
CSS0020963 Camellia sinensis var. sinensis HOM05D003735 ORTHO05D004550 9.5e-181 637.1 411 74.0
Lsat_1_v5_gn_5_115400 Lactuca sativa HOM05D003735 ORTHO05D004550 3.6e-180 635.2 407 73.5
CSS0002879 Camellia sinensis var. sinensis HOM05D003735 ORTHO05D004550 3.0e-179 632.1 359 81.3
Os04g0669900 Oryza sativa ssp. japonica HOM05D003735 ORTHO05D004550 3.0e-179 632.1 413 71.2
PSO675G8377 Papaver somniferum HOM05D003735 ORTHO05D004550 1.2e-178 630.2 411 73.2
unitig_747.g21222 Utricularia gibba HOM05D003735 ORTHO05D004550 1.7e-177 626.3 412 70.4
PSO541G1406 Papaver somniferum HOM05D003735 ORTHO05D004550 3.7e-177 625.2 411 73.7
Oeu013756.1 Olea europaea HOM05D003735 ORTHO05D004550 8.3e-177 624.0 495 62.0
Lj9C323T5 Lonicera japonica HOM05D003735 ORTHO05D004550 1.4e-176 623.2 368 79.1
Ah.01g018310 Amaranthus hybridus HOM05D003735 ORTHO05D004550 1.2e-175 620.2 417 71.5
Sed0001414 Sechium edule HOM05D003735 ORTHO05D004550 1.8e-171 606.3 358 79.1
ATR0589G073 Amborella trichopoda HOM05D003735 ORTHO05D004550 3.0e-171 605.5 411 69.6
ECA232G2787 Erigeron canadensis HOM05D003735 ORTHO05D004550 6.8e-171 604.4 418 68.9
RcHm_v2.0_Chr6g0254921 Rosa chinensis HOM05D003735 ORTHO05D004550 2.0e-170 602.8 361 78.4
BcaC08g43149 Brassica carinata HOM05D003735 ORTHO05D004550 4.7e-164 581.6 415 68.4
Eucgr.I01100 Eucalyptus grandis HOM05D003735 ORTHO05D004550 3.4e-162 575.5 341 78.6
SMO340G0152 Selaginella moellendorffii HOM05D003735 ORTHO05D004550 9.8e-162 573.9 412 65.5
Pp3c6_19060 Physcomitrium patens HOM05D003735 ORTHO05D004550 1.3e-158 563.5 412 63.3
vmacro01998 Vaccinium macrocarpon HOM05D003735 ORTHO05D004550 1.5e-149 533.5 428 62.4
Mapoly0029s0020 Marchantia polymorpha HOM05D003735 ORTHO05D004550 4.3e-149 531.9 411 60.1
AagrBONN_evm.TU.Sc2ySwM_344.2850 Anthoceros agrestis HOM05D003735 ORTHO05D004550 1.4e-147 526.9 410 60.5
DCAR_001652 Daucus carota HOM05D003735 ORTHO05D004550 3.4e-146 522.3 417 60.7
arahy.Tifrunner.gnm1.ann1.TAI6X1 Arachis hypogaea HOM05D003735 ORTHO05D004550 1.9e-141 506.5 315 78.7
Cfa004590 Carpinus fangiana HOM05D003735 ORTHO05D004550 4.6e-135 485.3 299 76.3
CBR_g23696 Chara braunii HOM05D003735 ORTHO05D004550 3.9e-134 482.3 427 54.3
AUR62010319 Chenopodium quinoa HOM05D003735 ORTHO05D004550 1.6e-132 476.9 340 67.4
QL11p033306 Quercus lobata HOM05D003735 ORTHO05D004550 5.3e-123 445.3 302 73.2
arahy.Tifrunner.gnm1.ann1.Z6IW8Q Arachis hypogaea HOM05D003735 ORTHO05D004550 1.1e-117 427.6 235 86.8
QL11p033359 Quercus lobata HOM05D003735 ORTHO05D004550 2.2e-113 413.3 223 85.2
Peaxi162Scf00152g00332 Petunia axillaris HOM05D003735 ORTHO05D004550 3.0e-110 402.9 284 68.3
Cre16.g673550 Chlamydomonas reinhardtii HOM05D003735 ORTHO05D007494 6.3e-108 395.2 416 48.3
CBR_g12222 Chara braunii HOM05D003735 ORTHO05D004550 9.0e-107 391.3 498 41.2
PRCOL_00000373 Prasinoderma coloniale HOM05D003735 ORTHO05D006943 3.3e-101 372.9 406 46.8
MCO11G261 Micromonas commoda HOM05D003735 ORTHO05D007494 2.8e-100 369.8 424 46.0
Glyma.01G244200 Glycine max HOM05D003735 ORTHO05D004550 9.1e-99 364.8 244 70.5
Nitab4.5_0026736g0020 Nicotiana tabacum HOM05D003735 ORTHO05D004550 1.8e-94 350.5 198 82.3
Nitab4.5_0001143g0070 Nicotiana tabacum HOM05D003735 ORTHO05D004550 2.6e-93 346.7 198 81.3
arahy.Tifrunner.gnm1.ann1.83SMNU Arachis hypogaea HOM05D003735 ORTHO05D004550 1.1e-80 304.7 216 73.1
Cc02_g18410 Coffea canephora HOM05D003735 ORTHO05D004550 1.2e-79 301.2 221 67.0
Hma1.2p1_1023F.1_g249070 Hydrangea macrophylla HOM05D003735 ORTHO05D004550 2.0e-69 267.3 258 55.4
Glyma.01G244132 Glycine max HOM05D003735 ORTHO05D004550 1.3e-68 264.6 157 80.3
Cc01_g17410 Coffea canephora HOM05D003735 ORTHO05D004550 2.4e-67 260.4 174 69.5
arahy.Tifrunner.gnm1.ann1.B546P6 Arachis hypogaea HOM05D003735 ORTHO05D004550 1.1e-64 251.5 151 80.8
ATR0589G120 Amborella trichopoda HOM05D003735 ORTHO05D004550 2.2e-60 237.3 160 70.6
Ciclev10029480m.g Citrus clementina HOM05D003735 ORTHO05D004550 9.2e-59 231.9 178 64.0
Peaxi162Scf00152g00233 Petunia axillaris HOM05D003735 ORTHO05D004550 2.7e-58 230.3 229 53.7
ATR0589G125 Amborella trichopoda HOM05D003735 ORTHO05D004550 1.1e-51 208.4 124 76.6
Gorai.013G047300 Gossypium raimondii HOM05D003735 ORTHO05D004550 2.4e-51 207.2 181 56.9
QL11p033356 Quercus lobata HOM05D003735 ORTHO05D004550 2.4e-51 207.2 124 76.6
Nitab4.5_0001143g0030 Nicotiana tabacum HOM05D003735 ORTHO05D004550 3.0e-49 200.3 121 73.6
Gohir.A13G043900 Gossypium hirsutum HOM05D003735 ORTHO05D004550 6.6e-49 199.1 335 37.3
Aqoxy6G02845 Aquilegia oxysepala HOM05D003735 ORTHO05D004550 8.0e-47 192.2 124 72.6
Gohir.D13G042333 Gossypium hirsutum HOM05D003735 ORTHO05D004550 3.4e-45 186.8 341 36.7
ATR0589G028 Amborella trichopoda HOM05D003735 ORTHO05D004550 5.2e-38 162.9 122 60.7
TPR.G20408 Trifolium pratense HOM05D003735 ORTHO05D004550 1.3e-33 148.3 89 84.3
TAR376G0098 Trochodendron aralioides HOM05D003735 ORTHO05D004550 2.1e-31 141.0 95 68.4
MBI14_g39937_MAGBIO Magnolia biondii HOM05D003735 ORTHO05D022889 3.2e-27 127.1 75 77.3
Gorai.013G047400 Gossypium raimondii HOM05D003735 ORTHO05D004550 4.2e-27 126.7 124 53.2
Nn4g25342 Nelumbo nucifera HOM05D003735 ORTHO05D004550 2.3e-25 120.9 71 78.9
TPR.G31649 Trifolium pratense HOM05D000067 ORTHO05D000097 4.4e-21 106.7 87 55.2
TPR.G13570 Trifolium pratense HOM05D003735 ORTHO05D004354 2.2e-20 104.4 94 52.1
Aqoxy6G02846 Aquilegia oxysepala HOM05D003735 ORTHO05D004550 3.8e-12 77.0 63 57.1
ATR0589G078 Amborella trichopoda HOM05D003735 ORTHO05D004550 1.5e-08 65.1 59 59.3
Cre07.g342900 Chlamydomonas reinhardtii HOM05D003735 ORTHO05D146703 1.5e-08 65.1 296 23.3
BcaC08g43052 Brassica carinata HOM05D003735 ORTHO05D004550 1.6e-07 61.6 57 49.1
Sabra16G0188100 Salix brachista HOM05D003735 ORTHO05D349252 1.6e-07 61.6 35 71.4


User provided reference genes

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