Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G32386 Trifolium pratense HOM05D003745 ORTHO05D004215 7.0e-44 180.3 93 100.0
Medtr2g084855 Medicago truncatula HOM05D003745 ORTHO05D004215 5.6e-33 144.1 93 79.6
Glyma.12G181700 Glycine max HOM05D003745 ORTHO05D004215 1.4e-23 112.8 95 67.4
Glyma.13G319200 Glycine max HOM05D003745 ORTHO05D004215 2.3e-23 112.1 94 64.9
Phvul.005G127200 Phaseolus vulgaris HOM05D003745 ORTHO05D004215 4.9e-21 104.4 94 62.8
Lj3g0011252 Lotus japonicus HOM05D003745 ORTHO05D004215 2.7e-19 98.6 94 60.6
Lalb_Chr14g0374201 Lupinus albus HOM05D003745 ORTHO05D004215 5.1e-18 94.4 93 59.1
arahy.Tifrunner.gnm1.ann1.X8LT49 Arachis hypogaea HOM05D003745 ORTHO05D004215 5.6e-17 90.9 82 61.0
arahy.Tifrunner.gnm1.ann1.T88YYN Arachis hypogaea HOM05D003745 ORTHO05D004215 6.2e-16 87.4 82 59.8
Dinv29425 Davidia involucrata HOM05D003745 ORTHO05D004215 1.5e-14 82.8 87 51.7
Lalb_Chr22g0350641 Lupinus albus HOM05D003745 ORTHO05D004215 5.8e-14 80.9 94 52.1
TWI75G0377 Tripterygium wilfordii HOM05D003745 ORTHO05D004215 9.9e-14 80.1 95 45.3
FvH4_3g29900 Fragaria vesca HOM05D003745 ORTHO05D004215 3.8e-13 78.2 95 48.4
FAN21G0140 Fragaria x ananassa HOM05D003745 ORTHO05D004215 3.8e-13 78.2 95 48.4
CSS0049961 Camellia sinensis var. sinensis HOM05D003745 ORTHO05D004215 6.4e-13 77.4 89 49.4
QL01p013692 Quercus lobata HOM05D003745 ORTHO05D004215 1.1e-12 76.6 81 49.4
RcHm_v2.0_Chr5g0055241 Rosa chinensis HOM05D003745 ORTHO05D004215 1.4e-12 76.3 94 47.9
FAN11G3796 Fragaria x ananassa HOM05D003745 ORTHO05D004215 1.9e-12 75.9 95 47.4
CSS0006810 Camellia sinensis var. sinensis HOM05D003745 ORTHO05D004215 7.1e-12 73.9 88 48.9
TAR633G1338 Trochodendron aralioides HOM05D003745 ORTHO05D004215 2.1e-11 72.4 61 57.4
Aqoxy2G01397 Aquilegia oxysepala HOM05D003745 ORTHO05D004215 2.7e-11 72.0 91 50.5
CSS0050359 Camellia sinensis var. sinensis HOM05D003745 ORTHO05D004215 2.7e-11 72.0 86 50.0
CiPaw.13G141100 Carya illinoinensis HOM05D003745 ORTHO05D004215 3.5e-11 71.6 96 44.8
CiPaw.14G103500 Carya illinoinensis HOM05D003745 ORTHO05D004215 3.5e-11 71.6 96 45.8
Ciclev10029683m.g Citrus clementina HOM05D003745 ORTHO05D004215 4.6e-11 71.2 94 44.7
Gohir.D09G093000 Gossypium hirsutum HOM05D003745 ORTHO05D004215 4.6e-11 71.2 93 45.2
Actinidia35448 Actinidia chinensis HOM05D003745 ORTHO05D004215 6.0e-11 70.9 88 46.6
FAN16G1639 Fragaria x ananassa HOM05D003745 ORTHO05D004215 6.0e-11 70.9 95 45.3
Gohir.A09G093200 Gossypium hirsutum HOM05D003745 ORTHO05D004215 6.0e-11 70.9 93 45.2
MD11G1157500 Malus domestica HOM05D003745 ORTHO05D004215 6.0e-11 70.9 95 46.3
GSVIVG01031398001 Vitis vinifera HOM05D003745 ORTHO05D004215 1.0e-10 70.1 87 51.7
TAR636G1780 Trochodendron aralioides HOM05D003745 ORTHO05D004215 1.3e-10 69.7 68 51.5
vmacro03277 Vaccinium macrocarpon HOM05D003745 ORTHO05D004215 1.7e-10 69.3 87 48.3
vmacro23109 Vaccinium macrocarpon HOM05D003745 ORTHO05D004215 1.7e-10 69.3 87 48.3
Haze_23447 Corylus avellana HOM05D003745 ORTHO05D004215 2.3e-10 68.9 84 47.6
Nn2g14004 Nelumbo nucifera HOM05D003745 ORTHO05D004215 2.3e-10 68.9 88 44.3
Nn6g35042 Nelumbo nucifera HOM05D003745 ORTHO05D004215 2.3e-10 68.9 59 57.6
Actinidia11335 Actinidia chinensis HOM05D003745 ORTHO05D004215 6.6e-10 67.4 81 43.2
Gorai.001G119600 Gossypium raimondii HOM05D003745 ORTHO05D004215 6.6e-10 67.4 95 45.3
Thecc.09G291500 Theobroma cacao HOM05D003745 ORTHO05D004215 6.6e-10 67.4 95 44.2
Gorai.006G109700 Gossypium raimondii HOM05D003745 ORTHO05D004215 8.7e-10 67.0 94 44.7
Gohir.D07G111300 Gossypium hirsutum HOM05D003745 ORTHO05D004215 1.1e-09 66.6 95 44.2
Sc12g0004160 Simmondsia chinensis HOM05D003745 ORTHO05D004215 1.1e-09 66.6 85 44.7
TWI79G1201 Tripterygium wilfordii HOM05D003745 ORTHO05D004215 1.1e-09 66.6 97 42.3
Ciclev10003706m.g Citrus clementina HOM05D003745 ORTHO05D004215 1.5e-09 66.2 92 46.7
Duzib150G0771 Durio zibethinus HOM05D003745 ORTHO05D004215 1.5e-09 66.2 95 41.1
Gohir.A07G107300 Gossypium hirsutum HOM05D003745 ORTHO05D004215 1.5e-09 66.2 95 45.3
Cc06_g05290 Coffea canephora HOM05D003745 ORTHO05D004215 1.9e-09 65.9 83 49.4
Thecc.05G081300 Theobroma cacao HOM05D003745 ORTHO05D004215 1.9e-09 65.9 88 46.6
arahy.Tifrunner.gnm1.ann1.AP4865 Arachis hypogaea HOM05D003745 ORTHO05D004215 2.5e-09 65.5 90 46.7
arahy.Tifrunner.gnm1.ann1.NCX3KP Arachis hypogaea HOM05D003745 ORTHO05D004215 2.5e-09 65.5 90 46.7
Potri.004G188200 Populus trichocarpa HOM05D003745 ORTHO05D004215 3.3e-09 65.1 96 43.8
Duzib168G0884 Durio zibethinus HOM05D003745 ORTHO05D004215 4.3e-09 64.7 94 41.5
Oeu001652.1 Olea europaea HOM05D003745 ORTHO05D004215 4.3e-09 64.7 97 45.4
Hund00782 Selenicereus undatus HOM05D003745 ORTHO05D004215 4.3e-09 64.7 91 41.8
Cfa010081 Carpinus fangiana HOM05D003745 ORTHO05D004215 5.6e-09 64.3 90 46.7
GSVIVG01033785001 Vitis vinifera HOM05D003745 ORTHO05D004215 5.6e-09 64.3 90 46.7
CANSAT80G1673 Cannabis sativa HOM05D003745 ORTHO05D004215 9.6e-09 63.5 94 43.6
Manes.11G157100 Manihot esculenta HOM05D003745 ORTHO05D004215 9.6e-09 63.5 96 44.8
vmacro07360 Vaccinium macrocarpon HOM05D003745 ORTHO05D004215 9.6e-09 63.5 89 42.7
CiPaw.09G008800 Carya illinoinensis HOM05D003745 ORTHO05D004215 1.3e-08 63.2 90 47.8
Dinv21253 Davidia involucrata HOM05D003745 ORTHO05D004215 1.3e-08 63.2 87 40.2
Lsat_1_v5_gn_6_41120 Lactuca sativa HOM05D003745 ORTHO05D004215 1.3e-08 63.2 53 60.4
Oeu050182.1 Olea europaea HOM05D003745 ORTHO05D004215 1.3e-08 63.2 97 45.4
SalBow6G4256 Salvia bowleyana HOM05D003745 ORTHO05D004215 1.3e-08 63.2 84 44.0
MD03G1134700 Malus domestica HOM05D003745 ORTHO05D004215 1.6e-08 62.8 84 42.9
Actinidia37099 Actinidia chinensis HOM05D003745 ORTHO05D004215 2.1e-08 62.4 89 46.1
COL.COLO4_19298 Corchorus olitorius HOM05D003745 ORTHO05D004215 2.8e-08 62.0 94 41.5
Dinv19830 Davidia involucrata HOM05D003745 ORTHO05D004215 2.8e-08 62.0 80 42.5
Glyma.10G066400 Glycine max HOM05D003745 ORTHO05D004215 2.8e-08 62.0 90 46.7
Atru.chr3.3378 Acer truncatum HOM05D003745 ORTHO05D004215 3.6e-08 61.6 80 46.2
Actinidia07207 Actinidia chinensis HOM05D003745 ORTHO05D004215 4.8e-08 61.2 86 45.3
MSTRG.21061 Avicennia marina HOM05D003745 ORTHO05D004215 4.8e-08 61.2 86 43.0
FAN02G0871 Fragaria x ananassa HOM05D003745 ORTHO05D004215 4.8e-08 61.2 50 62.0
TAR369G1123 Trochodendron aralioides HOM05D003745 ORTHO05D004215 4.8e-08 61.2 93 44.1
EL10Ac9g21084 Beta vulgaris HOM05D003745 ORTHO05D004215 8.1e-08 60.5 70 48.6
Eucgr.A01541 Eucalyptus grandis HOM05D003745 ORTHO05D004215 8.1e-08 60.5 89 46.1
PGR004G1125 Punica granatum HOM05D003745 ORTHO05D004215 1.1e-07 60.1 33 78.8
FvH4_6g17920 Fragaria vesca HOM05D003745 ORTHO05D004215 1.4e-07 59.7 81 45.7
FAN05G2107 Fragaria x ananassa HOM05D003745 ORTHO05D004215 1.4e-07 59.7 81 45.7
FAN05G2814 Fragaria x ananassa HOM05D003745 ORTHO05D004215 1.4e-07 59.7 81 45.7
FAN14G5394 Fragaria x ananassa HOM05D003745 ORTHO05D004215 1.4e-07 59.7 81 45.7
PSO384G0932 Papaver somniferum HOM05D003745 ORTHO05D004215 1.4e-07 59.7 102 41.2
QL07p040518 Quercus lobata HOM05D003745 ORTHO05D004215 1.4e-07 59.7 87 48.3
Actinidia24179 Actinidia chinensis HOM05D003745 ORTHO05D004215 1.8e-07 59.3 83 42.2
AT3G44735 Arabidopsis thaliana HOM05D003745 ORTHO05D004215 1.8e-07 59.3 78 47.4
Medtr1g061120 Medicago truncatula HOM05D003745 ORTHO05D004215 1.8e-07 59.3 40 65.0
PSO339G5919 Papaver somniferum HOM05D003745 ORTHO05D004215 1.8e-07 59.3 102 41.2
Migut.N02515 Erythranthe guttata HOM05D003745 ORTHO05D004215 2.4e-07 58.9 86 44.2
Sabra04G0127200 Salix brachista HOM05D003745 ORTHO05D004215 3.1e-07 58.5 96 39.6
Carub.0005s1042 Capsella rubella HOM05D003745 ORTHO05D004215 4.0e-07 58.2 79 48.1
Carub.0015s0003 Capsella rubella HOM05D003745 ORTHO05D004215 4.0e-07 58.2 79 48.1
Oeu040536.1 Olea europaea HOM05D003745 ORTHO05D004215 5.3e-07 57.8 88 42.0
Rhsim03G0081200 Rhododendron simsii HOM05D003745 ORTHO05D004215 5.3e-07 57.8 78 46.2
Sabra09G0117500 Salix brachista HOM05D003745 ORTHO05D004215 5.3e-07 57.8 62 46.8
TWI77G0164 Tripterygium wilfordii HOM05D003745 ORTHO05D004215 5.3e-07 57.8 80 45.0
CANSAT54G1542 Cannabis sativa HOM05D003745 ORTHO05D004215 6.9e-07 57.4 72 52.8
Ciclev10013197m.g Citrus clementina HOM05D003745 ORTHO05D004215 6.9e-07 57.4 84 45.2
DCAR_006146 Daucus carota HOM05D003745 ORTHO05D004215 6.9e-07 57.4 87 44.8
Glyma.13G151500 Glycine max HOM05D003745 ORTHO05D004215 6.9e-07 57.4 83 44.6
Gohir.A01G209100 Gossypium hirsutum HOM05D003745 ORTHO05D004215 6.9e-07 57.4 83 42.2
MD14G1016200 Malus domestica HOM05D003745 ORTHO05D004215 6.9e-07 57.4 82 47.6
THA.LOC104799535 Tarenaya hassleriana HOM05D003745 ORTHO05D004215 6.9e-07 57.4 96 39.6
Gohir.D01G198200 Gossypium hirsutum HOM05D003745 ORTHO05D004215 9.0e-07 57.0 83 42.2
Gorai.002G242400 Gossypium raimondii HOM05D003745 ORTHO05D004215 9.0e-07 57.0 83 42.2
Lj5g0022060 Lotus japonicus HOM05D003745 ORTHO05D004215 9.0e-07 57.0 87 43.7
Potri.009G148900 Populus trichocarpa HOM05D003745 ORTHO05D004215 9.0e-07 57.0 97 43.3
Cc01_g09790 Coffea canephora HOM05D003745 ORTHO05D004215 1.2e-06 56.6 78 46.2
Duzib128G0603 Durio zibethinus HOM05D003745 ORTHO05D004215 1.2e-06 56.6 90 44.4
Phvul.007G223101 Phaseolus vulgaris HOM05D003745 ORTHO05D004215 1.2e-06 56.6 87 41.4
Prupe.7G116900 Prunus persica HOM05D003745 ORTHO05D004215 1.2e-06 56.6 41 61.0
RcHm_v2.0_Chr3g0472171 Rosa chinensis HOM05D003745 ORTHO05D004215 1.2e-06 56.6 81 44.4
MSTRG.17729 Avicennia marina HOM05D003745 ORTHO05D004215 1.5e-06 56.2 95 41.1
Duzib093G0672 Durio zibethinus HOM05D003745 ORTHO05D004215 1.5e-06 56.2 83 42.2
Rhsim13G0105100 Rhododendron simsii HOM05D003745 ORTHO05D004215 1.5e-06 56.2 98 42.9
Cpa.g.sc5.75 Carica papaya HOM05D003745 ORTHO05D004215 2.0e-06 55.8 86 43.0
Duzib106G0076 Durio zibethinus HOM05D003745 ORTHO05D004215 2.0e-06 55.8 82 39.0
Lalb_Chr02g0155181 Lupinus albus HOM05D003745 ORTHO05D004215 2.0e-06 55.8 88 39.8
Psat7g007360 Pisum sativum HOM05D003745 ORTHO05D004215 2.0e-06 55.8 83 43.4
AL5G22960 Arabidopsis lyrata HOM05D003745 ORTHO05D004215 2.6e-06 55.5 81 45.7
CAN.G919.7 Capsicum annuum HOM05D003745 ORTHO05D004215 2.6e-06 55.5 93 40.9
MD12G1018200 Malus domestica HOM05D003745 ORTHO05D004215 2.6e-06 55.5 81 39.5
Manes.08G021100 Manihot esculenta HOM05D003745 ORTHO05D004215 2.6e-06 55.5 41 61.0
Sopen06g031010 Solanum pennellii HOM05D003745 ORTHO05D004215 2.6e-06 55.5 83 48.2
Sp5g16440 Schrenkiella parvula HOM05D003745 ORTHO05D004215 3.4e-06 55.1 82 41.5
Atru.chr8.1631 Acer truncatum HOM05D003745 ORTHO05D004215 4.4e-06 54.7 96 40.6
PSO063G0377 Papaver somniferum HOM05D003745 ORTHO05D004215 4.4e-06 54.7 94 39.4
PSO339G1716 Papaver somniferum HOM05D003745 ORTHO05D004215 4.4e-06 54.7 99 37.4
Thhalv10002908m.g Eutrema salsugineum HOM05D003745 ORTHO05D004215 7.6e-06 53.9 44 59.1
Rhsim01G0208400 Rhododendron simsii HOM05D003745 ORTHO05D004215 9.9e-06 53.5 48 62.5
Solyc06g074540.4 Solanum lycopersicum HOM05D003745 ORTHO05D004215 9.9e-06 53.5 87 41.4
PGSC0003DMG400007123 Solanum tuberosum HOM05D003745 ORTHO05D004215 9.9e-06 53.5 84 45.2
TPR.G22954 Trifolium pratense HOM05D001756 ORTHO05D001581 9.9e-06 53.5 75 48.0
TPR.G5649 Trifolium pratense HOM05D003745 ORTHO05D004215 9.9e-06 53.5 87 44.8


User provided reference genes

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