Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G32325 Trifolium pratense HOM05D004911 ORTHO05D005930 0.0e+00 1879.8 939 100.0
Medtr4g074460 Medicago truncatula HOM05D004911 ORTHO05D005930 0.0e+00 1583.2 891 90.9
Psat7g173880 Pisum sativum HOM05D004911 ORTHO05D005930 0.0e+00 1578.9 892 89.7
Ca_25607_v3 Cicer arietinum L. HOM05D004911 ORTHO05D005930 0.0e+00 1546.2 893 88.7
Lj3g0004396 Lotus japonicus HOM05D004911 ORTHO05D005930 0.0e+00 1333.9 897 76.8
Glyma.12G027900 Glycine max HOM05D004911 ORTHO05D005930 0.0e+00 1296.6 896 74.7
Glyma.11G102800 Glycine max HOM05D004911 ORTHO05D005930 0.0e+00 1279.6 899 73.5
VMungo1215G1051 Vigna mungo HOM05D004911 ORTHO05D005930 0.0e+00 1277.7 895 73.9
Lalb_Chr19g0139351 Lupinus albus HOM05D004911 ORTHO05D005930 0.0e+00 1182.5 894 70.0
arahy.Tifrunner.gnm1.ann1.Q7DFN3 Arachis hypogaea HOM05D004911 ORTHO05D005930 0.0e+00 1143.6 792 72.2
Prupe.2G211300 Prunus persica HOM05D004911 ORTHO05D005930 5.4e-301 1037.7 915 60.8
MD07G1172300 Malus domestica HOM05D004911 ORTHO05D005930 7.8e-300 1033.9 916 60.0
FAN10G0928 Fragaria x ananassa HOM05D004911 ORTHO05D005930 3.9e-299 1031.6 898 60.2
FAN10G1537 Fragaria x ananassa HOM05D004911 ORTHO05D005930 6.6e-299 1030.8 898 60.1
FAN03G1024 Fragaria x ananassa HOM05D004911 ORTHO05D005930 1.9e-298 1029.2 898 59.9
GSVIVG01010210001 Vitis vinifera HOM05D004911 ORTHO05D005930 2.8e-297 1025.4 900 59.8
FAN01G1211 Fragaria x ananassa HOM05D004911 ORTHO05D005930 8.9e-296 1020.4 902 59.8
FvH4_7g19060 Fragaria vesca HOM05D004911 ORTHO05D005930 1.5e-295 1019.6 896 60.2
RcHm_v2.0_Chr1g0362961 Rosa chinensis HOM05D004911 ORTHO05D005930 1.5e-295 1019.6 896 59.8
Ciclev10030563m.g Citrus clementina HOM05D004911 ORTHO05D005930 2.9e-294 1015.4 893 60.2
FAN06G4750 Fragaria x ananassa HOM05D004911 ORTHO05D005930 3.7e-294 1015.0 896 59.9
CANSAT56G0121 Cannabis sativa HOM05D004911 ORTHO05D005930 6.4e-294 1014.2 910 58.9
FAN06G1517 Fragaria x ananassa HOM05D004911 ORTHO05D005930 8.3e-294 1013.8 896 59.9
Manes.03G080800 Manihot esculenta HOM05D004911 ORTHO05D005930 1.3e-291 1006.5 900 59.2
Potri.008G085300 Populus trichocarpa HOM05D004911 ORTHO05D005930 1.5e-290 1003.0 902 61.2
Dinv12051 Davidia involucrata HOM05D004911 ORTHO05D005930 9.5e-290 1000.3 903 58.8
Duzib251G0593 Durio zibethinus HOM05D004911 ORTHO05D005930 3.6e-289 998.4 902 58.4
MD01G1105900 Malus domestica HOM05D004911 ORTHO05D005930 3.6e-289 998.4 916 58.0
Sabra08G0063200 Salix brachista HOM05D004911 ORTHO05D005930 8.1e-289 997.3 917 60.0
Atru.chr11.1224 Acer truncatum HOM05D004911 ORTHO05D005930 1.2e-287 993.4 906 58.9
Cfa008718 Carpinus fangiana HOM05D004911 ORTHO05D005930 5.8e-287 991.1 916 58.1
Thecc.02G295700 Theobroma cacao HOM05D004911 ORTHO05D005930 1.3e-286 989.9 901 58.5
TWI53G1120 Tripterygium wilfordii HOM05D004911 ORTHO05D005930 7.1e-285 984.2 897 58.8
Gorai.012G182900 Gossypium raimondii HOM05D004911 ORTHO05D005930 1.1e-282 976.9 903 57.8
Gohir.D04G186500 Gossypium hirsutum HOM05D004911 ORTHO05D005930 8.1e-281 970.7 903 57.8
Gohir.A04G143200 Gossypium hirsutum HOM05D004911 ORTHO05D005930 1.5e-279 966.5 903 57.3
CSS0020868 Camellia sinensis var. sinensis HOM05D004911 ORTHO05D005930 3.6e-273 945.3 906 56.4
PGR044G1924 Punica granatum HOM05D004911 ORTHO05D005930 3.6e-273 945.3 893 55.4
Lj3C852G13 Lonicera japonica HOM05D004911 ORTHO05D005930 4.0e-272 941.8 912 55.0
Nn3g18681 Nelumbo nucifera HOM05D004911 ORTHO05D005930 5.3e-272 941.4 906 57.1
Sed0025480 Sechium edule HOM05D004911 ORTHO05D005930 9.0e-272 940.6 904 56.0
MELO3C005202.2 Cucumis melo HOM05D004911 ORTHO05D005930 4.4e-271 938.3 906 56.4
Cpa.g.sc63.15 Carica papaya HOM05D004911 ORTHO05D005930 5.8e-271 937.9 904 55.9
ClCG01G007110 Citrullus lanatus HOM05D004911 ORTHO05D005930 2.9e-270 935.6 908 55.9
Actinidia04316 Actinidia chinensis HOM05D004911 ORTHO05D005930 3.2e-269 932.2 911 54.6
CsaV3_5G017560 Cucumis sativus L. HOM05D004911 ORTHO05D005930 5.4e-269 931.4 907 55.7
PSO063G3537 Papaver somniferum HOM05D004911 ORTHO05D005930 1.6e-268 929.9 911 55.1
PSO782G1502 Papaver somniferum HOM05D004911 ORTHO05D005930 3.0e-267 925.6 908 54.7
MBI03_g33919_MAGBIO Magnolia biondii HOM05D004911 ORTHO05D005930 3.8e-262 908.7 898 54.6
Rhsim09G0072200 Rhododendron simsii HOM05D004911 ORTHO05D005930 1.0e-259 900.6 948 52.7
EL10Ac9g22915 Beta vulgaris HOM05D004911 ORTHO05D005930 1.1e-258 897.1 915 53.9
Aqoxy3G04281 Aquilegia oxysepala HOM05D004911 ORTHO05D005930 1.5e-258 896.7 902 53.7
Hma1.2p1_0183F.1_g081050 Hydrangea macrophylla HOM05D004911 ORTHO05D005930 1.6e-257 893.3 858 54.2
Sopen10g030460 Solanum pennellii HOM05D004911 ORTHO05D005930 5.3e-256 888.3 909 52.7
Hund08529 Selenicereus undatus HOM05D004911 ORTHO05D005930 3.4e-255 885.6 914 52.7
Solyc10g079850.2 Solanum lycopersicum HOM05D004911 ORTHO05D005930 4.5e-255 885.2 909 52.6
PGSC0003DMG400029831 Solanum tuberosum HOM05D004911 ORTHO05D005930 2.5e-253 879.4 909 52.3
Nitab4.5_0000562g0030 Nicotiana tabacum HOM05D004911 ORTHO05D005930 1.0e-251 874.0 910 51.8
AUR62015197 Chenopodium quinoa HOM05D004911 ORTHO05D005930 1.8e-251 873.2 859 55.1
Lsat_1_v5_gn_0_9321 Lactuca sativa HOM05D004911 ORTHO05D005930 7.4e-250 867.8 935 51.4
ECA246G1490 Erigeron canadensis HOM05D004911 ORTHO05D005930 6.2e-249 864.8 915 52.2
HanXRQChr06g0175521 Helianthus annuus HOM05D004911 ORTHO05D005930 6.2e-249 864.8 912 52.6
Nitab4.5_0000677g0060 Nicotiana tabacum HOM05D004911 ORTHO05D005930 2.9e-246 855.9 911 51.0
COL.COLO4_16624 Corchorus olitorius HOM05D004911 ORTHO05D005930 4.2e-245 852.0 898 53.1
Peaxi162Scf01315g00114 Petunia axillaris HOM05D004911 ORTHO05D005930 1.1e-242 844.0 903 51.4
CARHR095390 Cardamine hirsuta HOM05D004911 ORTHO05D005930 1.9e-242 843.2 911 51.2
Thhalv10019942m.g Eutrema salsugineum HOM05D004911 ORTHO05D005930 8.2e-241 837.8 911 51.4
AL3G33410 Arabidopsis lyrata HOM05D004911 ORTHO05D005930 1.7e-238 830.1 908 50.8
Sp3g17890 Schrenkiella parvula HOM05D004911 ORTHO05D005930 1.7e-238 830.1 909 51.3
SGA_v2.0_scaffold80G25956 Striga asiatica HOM05D004911 ORTHO05D005930 1.7e-238 830.1 913 50.2
Carub.0003s1976 Capsella rubella HOM05D004911 ORTHO05D005930 8.5e-238 827.8 908 50.6
AT3G19870 Arabidopsis thaliana HOM05D004911 ORTHO05D005930 1.2e-236 823.9 909 50.5
Aa31LG8G6640 Aethionema arabicum HOM05D004911 ORTHO05D005930 2.1e-236 823.2 901 50.7
Ah.01g001680 Amaranthus hybridus HOM05D004911 ORTHO05D005930 2.7e-236 822.8 914 49.9
MSTRG.8077 Avicennia marina HOM05D004911 ORTHO05D005930 7.9e-236 821.2 904 49.6
vmacro16011 Vaccinium macrocarpon HOM05D004911 ORTHO05D005930 2.3e-235 819.7 909 50.7
A01p34870 Brassica napus HOM05D004911 ORTHO05D005930 2.0e-234 816.6 904 50.0
Cc07_g19490 Coffea canephora HOM05D004911 ORTHO05D005930 2.5e-234 816.2 920 50.4
BraA01t03570Z Brassica rapa HOM05D004911 ORTHO05D005930 4.3e-234 815.5 902 50.1
THA.LOC104809147 Tarenaya hassleriana HOM05D004911 ORTHO05D005930 4.3e-234 815.5 892 51.3
Sc06g0007820 Simmondsia chinensis HOM05D004911 ORTHO05D005930 1.8e-232 810.1 918 50.0
C01p44300 Brassica napus HOM05D004911 ORTHO05D005930 6.9e-232 808.1 903 49.7
BolC1t04393H Brassica oleracea HOM05D004911 ORTHO05D005930 6.9e-232 808.1 903 49.7
SalBow2G3529 Salvia bowleyana HOM05D004911 ORTHO05D005930 6.9e-232 808.1 906 50.4
Migut.H02310 Erythranthe guttata HOM05D004911 ORTHO05D005930 7.7e-231 804.7 916 48.5
CAN.G1656.8 Capsicum annuum HOM05D004911 ORTHO05D005930 3.1e-224 782.7 802 51.4
DCAR_023433 Daucus carota HOM05D004911 ORTHO05D005930 2.2e-222 776.5 905 49.1
ATR0564G294 Amborella trichopoda HOM05D004911 ORTHO05D005930 2.9e-222 776.2 947 46.7
unitig_22.g6363 Utricularia gibba HOM05D004911 ORTHO05D005930 5.3e-216 755.4 905 47.4
SHI04173 Sapria himalayana HOM05D004911 ORTHO05D005930 4.5e-207 725.7 898 46.5
BcaC09g48939 Brassica carinata HOM05D004911 ORTHO05D005930 7.7e-199 698.4 900 46.2
Haze_11729 Corylus avellana HOM05D004911 ORTHO05D005930 4.5e-191 672.5 611 58.6
Os02g0829400 Oryza sativa ssp. japonica HOM05D004911 ORTHO05D005930 7.8e-167 592.0 907 40.1
HPP92_012853 Vanilla planifolia HOM05D004911 ORTHO05D005930 1.4e-160 571.2 723 45.5
CDE05G0535 Ceratophyllum demersum HOM05D004911 ORTHO05D005930 9.6e-157 558.5 904 39.7
Eucgr.J00848 Eucalyptus grandis HOM05D004911 ORTHO05D005930 8.1e-156 555.4 525 54.1
QL03p043438 Quercus lobata HOM05D004911 ORTHO05D005930 2.2e-153 547.4 411 66.9
Mapoly0023s0169 Marchantia polymorpha HOM05D004911 ORTHO05D005930 2.9e-153 547.0 975 36.5
CiPaw.05G166600 Carya illinoinensis HOM05D004911 ORTHO05D005930 3.2e-152 543.5 420 65.5
SMO367G0101 Selaginella moellendorffii HOM05D004911 ORTHO05D005930 1.2e-151 541.6 944 37.8
Phvul.002G058701 Phaseolus vulgaris HOM05D004911 ORTHO05D005930 2.5e-149 533.9 329 81.5
CiPaw.05G166500 Carya illinoinensis HOM05D004911 ORTHO05D005930 2.0e-146 524.2 487 57.3
Pp3c23_5970 Physcomitrium patens HOM05D004911 ORTHO05D005930 9.3e-144 515.4 979 35.8
QL03p043434 Quercus lobata HOM05D004911 ORTHO05D005930 7.6e-138 495.7 480 55.8
TAR371G0490 Trochodendron aralioides HOM05D004911 ORTHO05D005930 1.3e-134 485.0 520 52.3
Hma1.2p1_0183F.1_g081060 Hydrangea macrophylla HOM05D004911 ORTHO05D005930 9.6e-133 478.8 416 58.2
AUR62017660 Chenopodium quinoa HOM05D004911 ORTHO05D005930 2.2e-129 467.6 418 57.9
Oeu056145.2 Olea europaea HOM05D004911 ORTHO05D005930 5.9e-122 443.0 415 56.6
TAR371G0035 Trochodendron aralioides HOM05D004911 ORTHO05D005930 5.9e-106 389.8 331 60.4
Zm00001eb259390 Zea mays HOM05D004911 ORTHO05D005930 8.2e-100 369.4 410 46.8
HPP92_012844 Vanilla planifolia HOM05D004911 ORTHO05D005930 1.1e-72 279.3 744 32.1
AagrBONN_evm.TU.Sc2ySwM_228.3553 Anthoceros agrestis HOM05D004911 ORTHO05D005930 3.1e-70 271.2 526 35.2
Haze_11728 Corylus avellana HOM05D004911 ORTHO05D005930 1.9e-67 261.9 249 57.8
CBR_g20270 Chara braunii HOM05D004911 ORTHO05D005930 4.7e-63 247.3 894 26.4
SHI47273 Sapria himalayana HOM05D004911 ORTHO05D005930 7.8e-58 229.9 486 32.7
SHI53748 Sapria himalayana HOM05D004911 ORTHO05D005930 3.5e-42 177.9 234 45.3
SHI34912 Sapria himalayana HOM05D004911 ORTHO05D005930 4.6e-42 177.6 421 31.4
SHI50333 Sapria himalayana HOM05D004911 ORTHO05D005930 2.3e-41 175.3 507 28.4
SHI34911 Sapria himalayana HOM05D004911 ORTHO05D005930 8.4e-36 156.8 248 39.5
SHI42568 Sapria himalayana HOM05D004911 ORTHO05D005930 4.2e-35 154.5 419 29.8
SHI45395 Sapria himalayana HOM05D004911 ORTHO05D005930 5.4e-35 154.1 148 53.4
SHI45716 Sapria himalayana HOM05D004911 ORTHO05D005930 5.4e-35 154.1 148 53.4
SHI39005 Sapria himalayana HOM05D004911 ORTHO05D005930 1.6e-34 152.5 168 47.0
VMungo0251G2567 Vigna mungo HOM05D004911 ORTHO05D018492 5.6e-32 144.1 83 84.3
SHI39004 Sapria himalayana HOM05D004911 ORTHO05D005930 7.4e-32 143.7 150 52.0
SHI42567 Sapria himalayana HOM05D004911 ORTHO05D005930 6.2e-31 140.6 148 51.4
SHI49274 Sapria himalayana HOM05D004911 ORTHO05D005930 2.6e-29 135.2 219 37.9
SHI51106 Sapria himalayana HOM05D004911 ORTHO05D005930 4.6e-26 124.4 146 45.9
SHI38854 Sapria himalayana HOM05D004911 ORTHO05D005930 1.9e-19 102.4 123 48.8
AagrBONN_evm.TU.Sc2ySwM_228.3554 Anthoceros agrestis HOM05D004911 ORTHO05D005930 5.1e-17 94.4 285 27.4
SHI45396 Sapria himalayana HOM05D004911 ORTHO05D005930 1.5e-16 92.8 244 30.3
SHI45717 Sapria himalayana HOM05D004911 ORTHO05D005930 1.5e-16 92.8 244 30.3
Dinv29855 Davidia involucrata HOM05D004911 ORTHO05D005930 3.7e-15 88.2 50 78.0
EL10Ac2g03601 Beta vulgaris HOM05D004911 ORTHO05D005930 3.8e-12 78.2 59 55.9
SHI38855 Sapria himalayana HOM05D004911 ORTHO05D005930 6.5e-12 77.4 127 42.5
SHI50603 Sapria himalayana HOM05D004911 ORTHO05D005930 8.7e-09 67.0 76 50.0
ATR0624G005 Amborella trichopoda HOM05D004911 ORTHO05D005930 9.7e-08 63.5 113 36.3
SMO343G0003 Selaginella moellendorffii HOM05D004911 ORTHO05D005930 2.8e-07 62.0 83 36.1


User provided reference genes

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