Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G32178 Trifolium pratense HOM05D003205 ORTHO05D003746 2.8e-45 184.9 90 100.0
VMungo0251G1316 Vigna mungo HOM05D003205 ORTHO05D003746 3.2e-25 118.2 59 91.5
Lj6g0020924 Lotus japonicus HOM05D003205 ORTHO05D003746 4.1e-25 117.9 59 93.2
TPR.G26460 Trifolium pratense HOM05D003205 ORTHO05D003746 4.1e-25 117.9 59 93.2
Glyma.07G046500 Glycine max HOM05D003205 ORTHO05D003746 5.4e-25 117.5 59 91.5
Glyma.16G014800 Glycine max HOM05D003205 ORTHO05D003746 1.2e-24 116.3 59 91.5
Medtr8g023490 Medicago truncatula HOM05D003205 ORTHO05D003746 1.6e-24 115.9 59 91.5
CiPaw.01G210700 Carya illinoinensis HOM05D003205 ORTHO05D003746 2.7e-24 115.2 59 89.8
Psat4g164760 Pisum sativum HOM05D003205 ORTHO05D003746 2.7e-24 115.2 59 91.5
arahy.Tifrunner.gnm1.ann1.K9Y76V Arachis hypogaea HOM05D003205 ORTHO05D003746 3.5e-24 114.8 59 88.1
arahy.Tifrunner.gnm1.ann1.N9CMJR Arachis hypogaea HOM05D003205 ORTHO05D003746 3.5e-24 114.8 59 88.1
arahy.Tifrunner.gnm1.ann1.YFI140 Arachis hypogaea HOM05D003205 ORTHO05D003746 3.5e-24 114.8 59 88.1
Cfa003454 Carpinus fangiana HOM05D003205 ORTHO05D003746 3.5e-24 114.8 59 88.1
QL05p000971 Quercus lobata HOM05D003205 ORTHO05D003746 3.5e-24 114.8 59 88.1
Lalb_Chr10g0101071 Lupinus albus HOM05D003205 ORTHO05D003746 6.0e-24 114.0 59 88.1
Phvul.010G122400 Phaseolus vulgaris HOM05D003205 ORTHO05D003746 6.0e-24 114.0 59 88.1
CANSAT56G3228 Cannabis sativa HOM05D003205 ORTHO05D003746 7.8e-24 113.6 59 88.1
Ca_23465_v3 Cicer arietinum L. HOM05D003205 ORTHO05D003746 7.8e-24 113.6 59 89.8
FvH4_6g36080 Fragaria vesca HOM05D003205 ORTHO05D003746 1.3e-23 112.8 59 89.8
FAN02G2685 Fragaria x ananassa HOM05D003205 ORTHO05D003746 1.3e-23 112.8 59 89.8
FAN05G2402 Fragaria x ananassa HOM05D003205 ORTHO05D003746 1.3e-23 112.8 59 89.8
TWI23G1304 Tripterygium wilfordii HOM05D003205 ORTHO05D003746 1.7e-23 112.5 59 86.4
GSVIVG01016658001 Vitis vinifera HOM05D003205 ORTHO05D003746 1.7e-23 112.5 59 84.7
arahy.Tifrunner.gnm1.ann1.42RYK8 Arachis hypogaea HOM05D003205 ORTHO05D003746 2.3e-23 112.1 59 86.4
MELO3C026659.2 Cucumis melo HOM05D003205 ORTHO05D003746 2.3e-23 112.1 59 84.7
CsaV3_3G031120 Cucumis sativus L. HOM05D003205 ORTHO05D003746 2.3e-23 112.1 59 84.7
Lalb_Chr15g0076651 Lupinus albus HOM05D003205 ORTHO05D003746 2.3e-23 112.1 59 89.8
MD09G1171900 Malus domestica HOM05D003205 ORTHO05D003746 3.0e-23 111.7 59 86.4
MD17G1155100 Malus domestica HOM05D003205 ORTHO05D003746 3.0e-23 111.7 59 86.4
TWI59G0476 Tripterygium wilfordii HOM05D003205 ORTHO05D003746 3.9e-23 111.3 59 86.4
Prupe.3G030300 Prunus persica HOM05D003205 ORTHO05D003746 5.1e-23 110.9 59 86.4
FAN09G0286 Fragaria x ananassa HOM05D003205 ORTHO05D003746 6.6e-23 110.5 59 88.1
FAN14G3383 Fragaria x ananassa HOM05D003205 ORTHO05D003746 6.6e-23 110.5 59 88.1
FAN14G4277 Fragaria x ananassa HOM05D003205 ORTHO05D003746 6.6e-23 110.5 59 88.1
Lalb_Chr04g0253981 Lupinus albus HOM05D003205 ORTHO05D003746 6.6e-23 110.5 59 88.1
RcHm_v2.0_Chr2g0148131 Rosa chinensis HOM05D003205 ORTHO05D003746 8.6e-23 110.2 59 88.1
ClCG07G014230 Citrullus lanatus HOM05D003205 ORTHO05D003746 1.1e-22 109.8 59 81.4
Duzib192G1026 Durio zibethinus HOM05D003205 ORTHO05D003746 1.1e-22 109.8 59 84.7
Eucgr.J02587 Eucalyptus grandis HOM05D003205 ORTHO05D003746 1.1e-22 109.8 59 84.7
Sc15g0000850 Simmondsia chinensis HOM05D003205 ORTHO05D003746 1.5e-22 109.4 59 83.1
Ah.08g217420 Amaranthus hybridus HOM05D003205 ORTHO05D003746 1.9e-22 109.0 59 83.1
AL1G29520 Arabidopsis lyrata HOM05D003205 ORTHO05D003746 1.9e-22 109.0 61 80.3
arahy.Tifrunner.gnm1.ann1.UC07MD Arachis hypogaea HOM05D003205 ORTHO05D003746 1.9e-22 109.0 59 86.4
PSO675G6030 Papaver somniferum HOM05D003205 ORTHO05D003746 3.3e-22 108.2 59 81.4
Carub.0001s1703 Capsella rubella HOM05D003205 ORTHO05D003746 4.3e-22 107.8 59 81.4
HanXRQChr09g0277291 Helianthus annuus HOM05D003205 ORTHO05D003746 4.3e-22 107.8 59 81.4
Lj5A28T48 Lonicera japonica HOM05D003205 ORTHO05D003746 4.3e-22 107.8 59 83.1
Sc12g0011020 Simmondsia chinensis HOM05D003205 ORTHO05D003746 4.3e-22 107.8 59 81.4
AUR62001394 Chenopodium quinoa HOM05D003205 ORTHO05D003746 5.6e-22 107.5 59 81.4
AUR62025609 Chenopodium quinoa HOM05D003205 ORTHO05D003746 5.6e-22 107.5 59 81.4
Ciclev10025289m.g Citrus clementina HOM05D003205 ORTHO05D003746 5.6e-22 107.5 59 81.4
Aa31LG7G2080 Aethionema arabicum HOM05D003205 ORTHO05D003746 7.3e-22 107.1 59 81.4
Lj1g0009105 Lotus japonicus HOM05D003205 ORTHO05D003746 7.3e-22 107.1 56 89.3
PGR102G1671 Punica granatum HOM05D003205 ORTHO05D003746 7.3e-22 107.1 59 83.1
Sed0004077 Sechium edule HOM05D003205 ORTHO05D003746 7.3e-22 107.1 59 83.1
SGA_v2.0_scaffold71G23945 Striga asiatica HOM05D003205 ORTHO05D003746 9.5e-22 106.7 59 83.1
AT1G17270 Arabidopsis thaliana HOM05D003205 ORTHO05D003746 1.2e-21 106.3 59 81.4
arahy.Tifrunner.gnm1.ann1.228WZM Arachis hypogaea HOM05D003205 ORTHO05D003746 1.2e-21 106.3 59 84.7
A06p00780 Brassica napus HOM05D003205 ORTHO05D003746 1.2e-21 106.3 59 81.4
C06p09550 Brassica napus HOM05D003205 ORTHO05D003746 1.2e-21 106.3 59 81.4
BolC6t36029H Brassica oleracea HOM05D003205 ORTHO05D003746 1.2e-21 106.3 59 81.4
BraA06t23312Z Brassica rapa HOM05D003205 ORTHO05D003746 1.2e-21 106.3 59 81.4
Eucgr.I02168 Eucalyptus grandis HOM05D003205 ORTHO05D003746 1.2e-21 106.3 59 83.1
Gohir.A06G142600 Gossypium hirsutum HOM05D003205 ORTHO05D003746 1.2e-21 106.3 59 83.1
Potri.003G073500 Populus trichocarpa HOM05D003205 ORTHO05D003746 1.2e-21 106.3 59 84.7
BcaC03g14650 Brassica carinata HOM05D003205 ORTHO05D003746 1.6e-21 105.9 59 79.7
BcaC07g38841 Brassica carinata HOM05D003205 ORTHO05D003746 1.6e-21 105.9 59 79.7
A02p12780 Brassica napus HOM05D003205 ORTHO05D003746 1.6e-21 105.9 59 79.7
A08p31000 Brassica napus HOM05D003205 ORTHO05D003746 1.6e-21 105.9 59 79.7
C02p20840 Brassica napus HOM05D003205 ORTHO05D003746 1.6e-21 105.9 59 79.7
C08p17800 Brassica napus HOM05D003205 ORTHO05D003746 1.6e-21 105.9 59 79.7
BolC2t08224H Brassica oleracea HOM05D003205 ORTHO05D003746 1.6e-21 105.9 59 79.7
BolC8t49406H Brassica oleracea HOM05D003205 ORTHO05D003746 1.6e-21 105.9 59 79.7
BraA02t06335Z Brassica rapa HOM05D003205 ORTHO05D003746 1.6e-21 105.9 59 79.7
BraA08t35029Z Brassica rapa HOM05D003205 ORTHO05D003746 1.6e-21 105.9 59 79.7
Carub.0008s1053 Capsella rubella HOM05D003205 ORTHO05D003746 1.6e-21 105.9 59 79.7
CARHR017860 Cardamine hirsuta HOM05D003205 ORTHO05D003746 1.6e-21 105.9 59 79.7
COL.COLO4_30879 Corchorus olitorius HOM05D003205 ORTHO05D003746 1.6e-21 105.9 59 81.4
Migut.I01142 Erythranthe guttata HOM05D003205 ORTHO05D003746 1.6e-21 105.9 59 81.4
Thhalv10013133m.g Eutrema salsugineum HOM05D003205 ORTHO05D003746 1.6e-21 105.9 59 79.7
Gohir.D06G148300 Gossypium hirsutum HOM05D003205 ORTHO05D003746 1.6e-21 105.9 59 81.4
Gorai.010G172800 Gossypium raimondii HOM05D003205 ORTHO05D003746 1.6e-21 105.9 59 81.4
Sp6g12580 Schrenkiella parvula HOM05D003205 ORTHO05D003746 1.6e-21 105.9 59 79.7
SpUn0015_0050 Schrenkiella parvula HOM05D003205 ORTHO05D003746 1.6e-21 105.9 59 79.7
SpUn0039_0040 Schrenkiella parvula HOM05D003205 ORTHO05D003746 1.6e-21 105.9 59 79.7
VMungo1309G3118 Vigna mungo HOM05D003205 ORTHO05D003746 1.6e-21 105.9 59 83.1
AL8G24652 Arabidopsis lyrata HOM05D003205 ORTHO05D003746 2.1e-21 105.5 59 79.7
AT5G50420 Arabidopsis thaliana HOM05D003205 ORTHO05D003746 2.1e-21 105.5 59 79.7
MSTRG.26363 Avicennia marina HOM05D003205 ORTHO05D003746 2.1e-21 105.5 59 81.4
EL10Ac7g18249 Beta vulgaris HOM05D003205 ORTHO05D003746 2.1e-21 105.5 59 79.7
BcaB03g13009 Brassica carinata HOM05D003205 ORTHO05D003746 2.1e-21 105.5 59 79.7
BcaC07g38842 Brassica carinata HOM05D003205 ORTHO05D003746 2.1e-21 105.5 59 79.7
BcaC07g38843 Brassica carinata HOM05D003205 ORTHO05D003746 2.1e-21 105.5 59 79.7
Duzib235G1024 Durio zibethinus HOM05D003205 ORTHO05D003746 2.1e-21 105.5 59 81.4
BcaB05g24051 Brassica carinata HOM05D003205 ORTHO05D003746 2.8e-21 105.1 59 78.0
DCAR_022637 Daucus carota HOM05D003205 ORTHO05D003746 2.8e-21 105.1 59 79.7
Nn6g35748 Nelumbo nucifera HOM05D003205 ORTHO05D003746 2.8e-21 105.1 59 79.7
Atru.chr1.4171 Acer truncatum HOM05D003205 ORTHO05D003746 3.6e-21 104.8 59 83.1
Actinidia25998 Actinidia chinensis HOM05D003205 ORTHO05D003746 3.6e-21 104.8 59 79.7
Aqoxy7G00922 Aquilegia oxysepala HOM05D003205 ORTHO05D003746 3.6e-21 104.8 59 81.4
Cpa.g.sc25.202 Carica papaya HOM05D003205 ORTHO05D003746 3.6e-21 104.8 59 81.4
Gorai.006G090800 Gossypium raimondii HOM05D003205 ORTHO05D003746 3.6e-21 104.8 59 79.7
MBI19_g32878_MAGBIO Magnolia biondii HOM05D003205 ORTHO05D003746 3.6e-21 104.8 59 78.0
Manes.11G011700 Manihot esculenta HOM05D003205 ORTHO05D003746 3.6e-21 104.8 59 83.1
Sp1g15400 Schrenkiella parvula HOM05D003205 ORTHO05D003746 3.6e-21 104.8 59 78.0
Solyc03g123720.4 Solanum lycopersicum HOM05D003205 ORTHO05D003746 3.6e-21 104.8 59 81.4
Sopen03g041490 Solanum pennellii HOM05D003205 ORTHO05D003746 3.6e-21 104.8 59 81.4
SGA_v2.0_scaffold68G22825 Striga asiatica HOM05D003205 ORTHO05D003746 3.6e-21 104.8 59 78.0
Thecc.06G131300 Theobroma cacao HOM05D003205 ORTHO05D003746 3.6e-21 104.8 59 81.4
Actinidia21844 Actinidia chinensis HOM05D003205 ORTHO05D003746 4.7e-21 104.4 59 78.0
Hma1.2p1_1999F.1_g310510 Hydrangea macrophylla HOM05D003205 ORTHO05D003746 4.7e-21 104.4 59 76.3
Rhsim12G0213400 Rhododendron simsii HOM05D003205 ORTHO05D003746 4.7e-21 104.4 59 79.7
Hund18628 Selenicereus undatus HOM05D003205 ORTHO05D003746 4.7e-21 104.4 59 79.7
Actinidia24417 Actinidia chinensis HOM05D003205 ORTHO05D003746 6.2e-21 104.0 59 79.7
ECA232G0298 Erigeron canadensis HOM05D003205 ORTHO05D003746 6.2e-21 104.0 59 79.7
Gohir.D09G075700 Gossypium hirsutum HOM05D003205 ORTHO05D003746 6.2e-21 104.0 56 83.9
Sp1g40290 Schrenkiella parvula HOM05D003205 ORTHO05D003746 6.2e-21 104.0 59 81.4
vmacro17068 Vaccinium macrocarpon HOM05D003205 ORTHO05D003746 6.2e-21 104.0 59 79.7
Nitab4.5_0006190g0010 Nicotiana tabacum HOM05D003205 ORTHO05D003746 8.1e-21 103.6 59 78.0
Sed0013389 Sechium edule HOM05D003205 ORTHO05D003746 8.1e-21 103.6 59 78.0
CAN.G790.51 Capsicum annuum HOM05D003205 ORTHO05D003746 1.1e-20 103.2 59 78.0
CiPaw.02G130300 Carya illinoinensis HOM05D003205 ORTHO05D003746 1.1e-20 103.2 59 81.4
Cc04_g00620 Coffea canephora HOM05D003205 ORTHO05D003746 1.1e-20 103.2 59 78.0
Gohir.A10G050100 Gossypium hirsutum HOM05D003205 ORTHO05D003746 1.1e-20 103.2 59 78.0
Gohir.D10G050700 Gossypium hirsutum HOM05D003205 ORTHO05D003746 1.1e-20 103.2 59 78.0
Gorai.011G054400 Gossypium raimondii HOM05D003205 ORTHO05D003746 1.1e-20 103.2 59 78.0
Hma1.2p1_0090F.1_g045700 Hydrangea macrophylla HOM05D003205 ORTHO05D003746 1.1e-20 103.2 59 78.0
Nitab4.5_0006338g0030 Nicotiana tabacum HOM05D003205 ORTHO05D003746 1.1e-20 103.2 59 78.0
Nitab4.5_0006966g0020 Nicotiana tabacum HOM05D003205 ORTHO05D003746 1.1e-20 103.2 59 78.0
Os07g0572600 Oryza sativa ssp. japonica HOM05D003205 ORTHO05D003746 1.1e-20 103.2 57 82.5
PSO017G4350 Papaver somniferum HOM05D003205 ORTHO05D003746 1.1e-20 103.2 59 79.7
PGSC0003DMG400009153 Solanum tuberosum HOM05D003205 ORTHO05D003746 1.1e-20 103.2 59 79.7
BcaB07g33302 Brassica carinata HOM05D003205 ORTHO05D003746 1.4e-20 102.8 59 79.7
BcaC08g43556 Brassica carinata HOM05D003205 ORTHO05D003746 1.4e-20 102.8 58 79.3
CSS0017118 Camellia sinensis var. sinensis HOM05D003205 ORTHO05D003746 1.4e-20 102.8 59 78.0
HPP92_014233 Vanilla planifolia HOM05D003205 ORTHO05D003746 1.4e-20 102.8 59 79.7
MSTRG.22513 Avicennia marina HOM05D003205 ORTHO05D003746 1.8e-20 102.4 59 79.7
CAN.G1633.1 Capsicum annuum HOM05D003205 ORTHO05D003746 1.8e-20 102.4 59 79.7
Thhalv10011359m.g Eutrema salsugineum HOM05D003205 ORTHO05D003746 1.8e-20 102.4 59 79.7
Lj9A539T87 Lonicera japonica HOM05D003205 ORTHO05D003746 1.8e-20 102.4 59 79.7
PSO675G7039 Papaver somniferum HOM05D003205 ORTHO05D003746 1.8e-20 102.4 59 79.7
MELO3C003961.2 Cucumis melo HOM05D003205 ORTHO05D003746 2.4e-20 102.1 59 78.0
CsaV3_2G008800 Cucumis sativus L. HOM05D003205 ORTHO05D003746 2.4e-20 102.1 59 78.0
Dinv37815 Davidia involucrata HOM05D003205 ORTHO05D003746 2.4e-20 102.1 59 76.3
Thhalv10007186m.g Eutrema salsugineum HOM05D003205 ORTHO05D003746 2.4e-20 102.1 59 78.0
SalBow6G2264 Salvia bowleyana HOM05D003205 ORTHO05D003746 2.4e-20 102.1 59 78.0
Carub.0001s4304 Capsella rubella HOM05D003205 ORTHO05D003746 4.0e-20 101.3 59 79.7
Lsat_1_v5_gn_4_89601 Lactuca sativa HOM05D003205 ORTHO05D003746 4.0e-20 101.3 59 76.3
Nitab4.5_0010570g0030 Nicotiana tabacum HOM05D003205 ORTHO05D003746 4.0e-20 101.3 59 76.3
Oeu019512.1 Olea europaea HOM05D003205 ORTHO05D003746 4.0e-20 101.3 59 78.0
Peaxi162Scf00038g02329 Petunia axillaris HOM05D003205 ORTHO05D003746 4.0e-20 101.3 59 78.0
unitig_748.g7075 Utricularia gibba HOM05D003205 ORTHO05D003746 4.0e-20 101.3 59 78.0
ClCG11G011670 Citrullus lanatus HOM05D003205 ORTHO05D003746 5.2e-20 100.9 59 76.3
AT1G53770 Arabidopsis thaliana HOM05D003205 ORTHO05D003746 6.8e-20 100.5 59 76.3
CARHR257920 Cardamine hirsuta HOM05D003205 ORTHO05D003746 6.8e-20 100.5 59 74.6
Sabra03G0044100 Salix brachista HOM05D003205 ORTHO05D003746 6.8e-20 100.5 59 81.4
THA.LOC104812278 Tarenaya hassleriana HOM05D003205 ORTHO05D003746 8.9e-20 100.1 59 72.9
AL1G62460 Arabidopsis lyrata HOM05D003205 ORTHO05D003746 1.2e-19 99.8 59 78.0
HPP92_012515 Vanilla planifolia HOM05D003205 ORTHO05D003746 1.5e-19 99.4 59 76.3
Zm00001eb107370 Zea mays HOM05D003205 ORTHO05D003746 1.5e-19 99.4 57 77.2
Solyc06g063120.4 Solanum lycopersicum HOM05D003205 ORTHO05D003746 2.0e-19 99.0 59 72.9
Sopen06g022570 Solanum pennellii HOM05D003205 ORTHO05D003746 2.0e-19 99.0 59 72.9
PGSC0003DMG400004868 Solanum tuberosum HOM05D003205 ORTHO05D003746 3.4e-19 98.2 59 72.9
SHI25231 Sapria himalayana HOM05D003205 ORTHO05D003746 7.6e-19 97.1 69 66.7
ATR0053G062 Amborella trichopoda HOM05D003205 ORTHO05D003746 9.9e-19 96.7 59 74.6
Haze_16144 Corylus avellana HOM05D003205 ORTHO05D003746 9.9e-19 96.7 49 89.8
Haze_16148 Corylus avellana HOM05D003205 ORTHO05D003746 9.9e-19 96.7 49 89.8
THA.LOC104822610 Tarenaya hassleriana HOM05D003205 ORTHO05D003746 1.3e-18 96.3 59 76.3
Aa31LG10G1520 Aethionema arabicum HOM05D003205 ORTHO05D003746 2.9e-18 95.1 59 72.9
CARHR044080 Cardamine hirsuta HOM05D003205 ORTHO05D003746 3.8e-18 94.7 59 76.3
Psat0s3082g0080 Pisum sativum HOM05D003205 ORTHO05D003746 3.8e-18 94.7 59 72.9
Oeu006758.2 Olea europaea HOM05D003205 ORTHO05D003746 1.9e-17 92.4 71 62.0
SEGI_38726 Sequoiadendron giganteum HOM05D003205 ORTHO05D003746 3.2e-17 91.7 57 70.2
Phvul.009G261000 Phaseolus vulgaris HOM05D003205 ORTHO05D003746 2.1e-16 89.0 48 85.4
SMO117G0353 Selaginella moellendorffii HOM05D003205 ORTHO05D003746 3.0e-15 85.1 56 66.1
SMO117G0321 Selaginella moellendorffii HOM05D003205 ORTHO05D003746 1.9e-14 82.4 59 61.0
AagrBONN_evm.TU.Sc2ySwM_368.534 Anthoceros agrestis HOM05D003205 ORTHO05D003746 7.3e-14 80.5 53 67.9
Pp3c26_250 Physcomitrium patens HOM05D003205 ORTHO05D003746 1.7e-07 59.3 58 46.6
vmacro22011 Vaccinium macrocarpon HOM05D003205 ORTHO05D003746 1.7e-07 59.3 34 82.4
Actinidia31143 Actinidia chinensis HOM05D004903 ORTHO05D005849 2.3e-07 58.9 42 71.4
CBR_g55863 Chara braunii HOM05D000019 ORTHO05D000353 1.9e-06 55.8 53 41.5


User provided reference genes

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