Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G32174 Trifolium pratense HOM05D005368 ORTHO05D006417 1.5e-103 379.4 182 100.0
Psat5g003920 Pisum sativum HOM05D005368 ORTHO05D006417 2.3e-51 206.1 182 62.1
Medtr3g117550 Medicago truncatula HOM05D005368 ORTHO05D006417 6.8e-51 204.5 182 61.0
Ca_15334_v3 Cicer arietinum L. HOM05D005368 ORTHO05D006417 1.3e-49 200.3 178 60.1
VMungo1309G2922 Vigna mungo HOM05D005368 ORTHO05D006417 2.9e-49 199.1 180 58.3
Glyma.04G008100 Glycine max HOM05D005368 ORTHO05D006417 5.4e-48 194.9 180 56.7
Glyma.06G007900 Glycine max HOM05D005368 ORTHO05D006417 5.4e-48 194.9 180 56.7
Lalb_Chr11g0061301 Lupinus albus HOM05D005368 ORTHO05D006417 1.3e-46 190.3 182 56.0
QL11p046417 Quercus lobata HOM05D005368 ORTHO05D006417 1.7e-46 189.9 180 57.2
CiPaw.05G073300 Carya illinoinensis HOM05D005368 ORTHO05D006417 6.6e-46 188.0 182 55.5
Haze_02245 Corylus avellana HOM05D005368 ORTHO05D006417 1.9e-45 186.4 182 54.4
Phvul.009G002900 Phaseolus vulgaris HOM05D005368 ORTHO05D006417 1.9e-45 186.4 180 55.6
Cfa005111 Carpinus fangiana HOM05D005368 ORTHO05D006417 2.5e-45 186.0 182 53.8
Lalb_Chr08g0246711 Lupinus albus HOM05D005368 ORTHO05D006417 2.5e-45 186.0 180 55.0
CiPaw.06G128000 Carya illinoinensis HOM05D005368 ORTHO05D006417 3.3e-45 185.7 182 54.4
Prupe.8G083900 Prunus persica HOM05D005368 ORTHO05D006417 3.3e-45 185.7 182 56.6
Sed0023703 Sechium edule HOM05D005368 ORTHO05D006417 3.3e-45 185.7 180 55.6
Haze_02248 Corylus avellana HOM05D005368 ORTHO05D006417 5.6e-45 184.9 181 54.1
MD00G1086200 Malus domestica HOM05D005368 ORTHO05D006417 5.6e-45 184.9 182 56.0
MBI18_g13600_MAGBIO Magnolia biondii HOM05D005368 ORTHO05D006417 9.5e-45 184.1 182 56.0
CANSAT11G1177 Cannabis sativa HOM05D005368 ORTHO05D006417 1.6e-44 183.3 181 54.1
FAN20G0372 Fragaria x ananassa HOM05D005368 ORTHO05D006417 1.6e-44 183.3 182 55.5
Thecc.02G075100 Theobroma cacao HOM05D005368 ORTHO05D006417 2.8e-44 182.6 182 54.4
FvH4_2g10430 Fragaria vesca HOM05D005368 ORTHO05D006417 4.7e-44 181.8 180 55.6
FAN24G2358 Fragaria x ananassa HOM05D005368 ORTHO05D006417 4.7e-44 181.8 180 55.6
FAN27G2088 Fragaria x ananassa HOM05D005368 ORTHO05D006417 6.2e-44 181.4 180 55.0
CsaV3_2G015290 Cucumis sativus L. HOM05D005368 ORTHO05D006417 1.4e-43 180.3 180 55.6
FAN15G3179 Fragaria x ananassa HOM05D005368 ORTHO05D006417 1.4e-43 180.3 180 54.4
Gohir.D02G220600 Gossypium hirsutum HOM05D005368 ORTHO05D006417 1.4e-43 180.3 182 54.4
Gorai.005G248500 Gossypium raimondii HOM05D005368 ORTHO05D006417 1.8e-43 179.9 182 54.4
TWI79G1074 Tripterygium wilfordii HOM05D005368 ORTHO05D006417 1.8e-43 179.9 179 53.1
GSVIVG01024171001 Vitis vinifera HOM05D005368 ORTHO05D006417 1.8e-43 179.9 180 52.8
Duzib052G0771 Durio zibethinus HOM05D005368 ORTHO05D006417 2.3e-43 179.5 182 52.7
Potri.009G124600 Populus trichocarpa HOM05D005368 ORTHO05D006417 2.3e-43 179.5 178 53.9
BraA08t33631Z Brassica rapa HOM05D005368 ORTHO05D006417 3.1e-43 179.1 187 52.9
Gohir.A03G199300 Gossypium hirsutum HOM05D005368 ORTHO05D006417 5.2e-43 178.3 182 53.8
Lj3g0011506 Lotus japonicus HOM05D005368 ORTHO05D006417 5.2e-43 178.3 178 55.1
Nn5g29240 Nelumbo nucifera HOM05D005368 ORTHO05D006417 5.2e-43 178.3 177 53.1
Potri.004G163000 Populus trichocarpa HOM05D005368 ORTHO05D006417 6.8e-43 177.9 182 52.2
TWI31G1415 Tripterygium wilfordii HOM05D005368 ORTHO05D006417 6.8e-43 177.9 179 53.6
Gohir.A12G041100 Gossypium hirsutum HOM05D005368 ORTHO05D006417 8.9e-43 177.6 182 52.2
RcHm_v2.0_Chr6g0267931 Rosa chinensis HOM05D005368 ORTHO05D006417 8.9e-43 177.6 180 54.4
TWI75G0748 Tripterygium wilfordii HOM05D005368 ORTHO05D006417 1.2e-42 177.2 179 53.6
TAR376G0297 Trochodendron aralioides HOM05D005368 ORTHO05D006417 1.2e-42 177.2 177 52.5
Gohir.D12G031300 Gossypium hirsutum HOM05D005368 ORTHO05D006417 1.5e-42 176.8 182 52.2
Gorai.008G032000 Gossypium raimondii HOM05D005368 ORTHO05D006417 1.5e-42 176.8 182 52.2
Sed0006755 Sechium edule HOM05D005368 ORTHO05D006417 1.5e-42 176.8 178 53.9
Duzib132G1204 Durio zibethinus HOM05D005368 ORTHO05D006417 2.6e-42 176.0 182 51.6
Manes.04G083400 Manihot esculenta HOM05D005368 ORTHO05D006417 2.6e-42 176.0 178 52.2
PGR042G2956 Punica granatum HOM05D005368 ORTHO05D006417 3.4e-42 175.6 178 52.8
Aqoxy5G01478 Aquilegia oxysepala HOM05D005368 ORTHO05D006417 9.8e-42 174.1 177 53.7
Hma1.2p1_0032F.1_g020120 Hydrangea macrophylla HOM05D005368 ORTHO05D006417 1.7e-41 173.3 180 51.1
Manes.11G081900 Manihot esculenta HOM05D005368 ORTHO05D006417 1.7e-41 173.3 178 51.1
MD10G1063100 Malus domestica HOM05D005368 ORTHO05D006417 2.2e-41 172.9 181 54.1
COL.COLO4_26045 Corchorus olitorius HOM05D005368 ORTHO05D006417 2.9e-41 172.6 178 51.1
Nitab4.5_0001317g0060 Nicotiana tabacum HOM05D005368 ORTHO05D006417 2.9e-41 172.6 179 53.1
ClCG11G003860 Citrullus lanatus HOM05D005368 ORTHO05D006417 4.9e-41 171.8 181 51.4
Ciclev10029601m.g Citrus clementina HOM05D005368 ORTHO05D006417 6.4e-41 171.4 178 52.8
ECA246G1492 Erigeron canadensis HOM05D005368 ORTHO05D006417 6.4e-41 171.4 179 51.4
Gorai.002G149100 Gossypium raimondii HOM05D005368 ORTHO05D006417 1.1e-40 170.6 184 51.1
Atru.chr5.3143 Acer truncatum HOM05D005368 ORTHO05D006417 5.4e-40 168.3 181 51.4
Nitab4.5_0005266g0100 Nicotiana tabacum HOM05D005368 ORTHO05D006417 5.4e-40 168.3 179 51.4
THA.LOC104819629 Tarenaya hassleriana HOM05D005368 ORTHO05D006417 7.1e-40 167.9 180 50.0
Sp7g32480 Schrenkiella parvula HOM05D005368 ORTHO05D006417 9.2e-40 167.5 180 50.0
CDE02G1335 Ceratophyllum demersum HOM05D000240 ORTHO05D001140 1.2e-39 167.2 181 50.3
HanXRQChr15g0478311 Helianthus annuus HOM05D005368 ORTHO05D006417 1.2e-39 167.2 178 50.6
PSO210G0115 Papaver somniferum HOM05D005368 ORTHO05D006417 1.2e-39 167.2 182 51.6
PSO170G4570 Papaver somniferum HOM05D005368 ORTHO05D006417 1.6e-39 166.8 182 51.1
CAN.G170.100 Capsicum annuum HOM05D005368 ORTHO05D006417 2.7e-39 166.0 179 50.8
CSS0039837 Camellia sinensis var. sinensis HOM05D005368 ORTHO05D006417 3.5e-39 165.6 176 52.3
Aa31LG2G15810 Aethionema arabicum HOM05D005368 ORTHO05D006417 4.6e-39 165.2 180 48.3
BcaNung07080 Brassica carinata HOM05D005368 ORTHO05D006417 4.6e-39 165.2 180 50.0
A03p63090 Brassica napus HOM05D005368 ORTHO05D006417 4.6e-39 165.2 180 50.0
BolC7t46501H Brassica oleracea HOM05D005368 ORTHO05D006417 4.6e-39 165.2 180 50.0
BraA03t15384Z Brassica rapa HOM05D005368 ORTHO05D006417 4.6e-39 165.2 180 50.0
MD00G1117500 Malus domestica HOM05D005368 ORTHO05D006417 7.8e-39 164.5 182 52.2
AL7G16500 Arabidopsis lyrata HOM05D005368 ORTHO05D006417 1.0e-38 164.1 180 50.0
C07p60710 Brassica napus HOM05D005368 ORTHO05D006417 1.0e-38 164.1 180 50.0
CSS0032904 Camellia sinensis var. sinensis HOM05D005368 ORTHO05D006417 1.0e-38 164.1 176 51.7
AT4G34700 Arabidopsis thaliana HOM05D005368 ORTHO05D006417 1.3e-38 163.7 180 50.0
Peaxi162Scf00016g00038 Petunia axillaris HOM05D005368 ORTHO05D006417 1.3e-38 163.7 179 50.3
BcaB03g11818 Brassica carinata HOM05D005368 ORTHO05D006417 1.7e-38 163.3 180 49.4
A08p16660 Brassica napus HOM05D005368 ORTHO05D006417 1.7e-38 163.3 180 49.4
Cc02_g16910 Coffea canephora HOM05D005368 ORTHO05D006417 1.7e-38 163.3 182 51.1
Solyc01g110390.2 Solanum lycopersicum HOM05D005368 ORTHO05D006417 1.7e-38 163.3 179 49.7
A01p03810 Brassica napus HOM05D005368 ORTHO05D006417 2.3e-38 162.9 180 49.4
BraA01t00366Z Brassica rapa HOM05D005368 ORTHO05D006417 2.3e-38 162.9 180 49.4
Carub.0007s0559 Capsella rubella HOM05D005368 ORTHO05D006417 2.3e-38 162.9 180 50.6
MELO3C023357.2 Cucumis melo HOM05D005368 ORTHO05D006417 2.3e-38 162.9 181 50.8
HPP92_012929 Vanilla planifolia HOM05D005368 ORTHO05D006417 3.0e-38 162.5 178 49.4
CARHR243000 Cardamine hirsuta HOM05D005368 ORTHO05D006417 3.9e-38 162.2 180 49.4
Os06g0714100 Oryza sativa ssp. japonica HOM05D005368 ORTHO05D006417 3.9e-38 162.2 177 48.0
Hund00179 Selenicereus undatus HOM05D005368 ORTHO05D006417 6.6e-38 161.4 179 49.2
Hund00187 Selenicereus undatus HOM05D005368 ORTHO05D006417 6.6e-38 161.4 179 49.2
MSTRG.27675 Avicennia marina HOM05D005368 ORTHO05D006417 8.6e-38 161.0 178 50.0
BcaNung00672 Brassica carinata HOM05D005368 ORTHO05D006417 1.1e-37 160.6 180 48.3
BcaNung00675 Brassica carinata HOM05D005368 ORTHO05D006417 1.1e-37 160.6 180 48.3
C01p04120 Brassica napus HOM05D005368 ORTHO05D006417 1.1e-37 160.6 180 48.3
Migut.N01277 Erythranthe guttata HOM05D005368 ORTHO05D006417 1.5e-37 160.2 177 50.3
SGA_v2.0_scaffold207G41877 Striga asiatica HOM05D005368 ORTHO05D006417 2.5e-37 159.5 179 50.3
MSTRG.20040 Avicennia marina HOM05D005368 ORTHO05D006417 7.3e-37 157.9 178 48.9
BcaC01g00883 Brassica carinata HOM05D005368 ORTHO05D006417 7.3e-37 157.9 176 48.9
C03p85580 Brassica napus HOM05D005368 ORTHO05D006417 9.5e-37 157.5 180 48.3
Hund06283 Selenicereus undatus HOM05D005368 ORTHO05D006417 2.8e-36 156.0 179 46.9
ATR0149G005 Amborella trichopoda HOM05D005368 ORTHO05D006417 3.6e-36 155.6 180 48.3
Nitab4.5_0010630g0030 Nicotiana tabacum HOM05D005368 ORTHO05D006417 2.3e-35 152.9 168 52.4
Gohir.D13G096825 Gossypium hirsutum HOM05D005368 ORTHO05D006417 4.4e-34 148.7 169 47.9
Oeu046129.2 Olea europaea HOM05D005368 ORTHO05D006417 5.8e-34 148.3 171 46.8
Zm00001eb227940 Zea mays HOM05D005368 ORTHO05D006417 1.3e-33 147.1 167 47.9
Lsat_1_v5_gn_3_44180 Lactuca sativa HOM05D005368 ORTHO05D006417 2.2e-33 146.4 166 49.4
Dinv23453 Davidia involucrata HOM05D005368 ORTHO05D006417 4.9e-33 145.2 159 50.9
Ah.01g006460 Amaranthus hybridus HOM05D005368 ORTHO05D006417 2.4e-32 142.9 180 43.3
AUR62010388 Chenopodium quinoa HOM05D005368 ORTHO05D006417 3.2e-32 142.5 171 46.8
AUR62016830 Chenopodium quinoa HOM05D005368 ORTHO05D006417 7.1e-32 141.4 171 46.2
Sc08g0000900 Simmondsia chinensis HOM05D005368 ORTHO05D006417 9.2e-32 141.0 169 44.4
Ah.01g018810 Amaranthus hybridus HOM05D005368 ORTHO05D006417 1.2e-31 140.6 170 47.1
BolC1t00400H Brassica oleracea HOM05D005368 ORTHO05D006417 2.7e-31 139.4 169 46.2
CDE04G1205 Ceratophyllum demersum HOM05D005368 ORTHO05D006417 1.0e-30 137.5 85 77.6
EL10Ac9g21636 Beta vulgaris HOM05D005368 ORTHO05D006417 3.0e-30 136.0 168 45.8
SalBow3G2013 Salvia bowleyana HOM05D005368 ORTHO05D006417 1.9e-29 133.3 169 46.7
PGSC0003DMG400005571 Solanum tuberosum HOM05D005368 ORTHO05D006417 2.5e-29 132.9 85 72.9
Nitab4.5_0005932g0060 Nicotiana tabacum HOM05D005368 ORTHO05D006417 1.1e-27 127.5 179 42.5
Actinidia02246 Actinidia chinensis HOM05D005368 ORTHO05D006417 1.4e-27 127.1 181 42.0
SEGI_21378 Sequoiadendron giganteum HOM05D005368 ORTHO05D006417 1.4e-27 127.1 182 42.3
Eucgr.G01730 Eucalyptus grandis HOM05D005368 ORTHO05D006417 2.0e-26 123.2 60 91.7
Thhalv10026594m.g Eutrema salsugineum HOM05D005368 ORTHO05D006417 1.7e-25 120.2 73 69.9
Pp3c6_19130 Physcomitrium patens HOM05D005368 ORTHO05D006417 4.9e-25 118.6 178 37.1
Sopen01g052540 Solanum pennellii HOM05D005368 ORTHO05D006417 5.4e-24 115.2 71 71.8
Mapoly0002s0197 Marchantia polymorpha HOM05D005368 ORTHO05D006417 1.6e-23 113.6 175 38.3
HanXRQChr10g0292781 Helianthus annuus HOM05D005368 ORTHO05D006417 3.0e-22 109.4 58 79.3
Gohir.A13G090800 Gossypium hirsutum HOM05D005368 ORTHO05D006417 5.1e-22 108.6 85 64.7
CSS0005721 Camellia sinensis var. sinensis HOM05D005368 ORTHO05D006417 1.5e-21 107.1 60 78.3
Lj5C189G13 Lonicera japonica HOM05D006147 ORTHO05D007501 6.2e-20 101.7 61 72.1
AagrBONN_evm.TU.Sc2ySwM_368.1500 Anthoceros agrestis HOM05D005368 ORTHO05D006417 4.0e-19 99.0 180 32.8
CBR_g22898 Chara braunii HOM05D000019 ORTHO05D000048 2.6e-18 96.3 178 34.3
unitig_60.g25866 Utricularia gibba HOM05D005368 ORTHO05D006417 1.7e-17 93.6 99 44.4
BolC3t20846H Brassica oleracea HOM05D005368 ORTHO05D006417 2.2e-17 93.2 83 59.0
Oeu020711.1 Olea europaea HOM05D005368 ORTHO05D006417 6.4e-17 91.7 171 36.3
Migut.B00174 Erythranthe guttata HOM05D005368 ORTHO05D006417 4.2e-16 89.0 58 77.6
HanXRQChr17g0544121 Helianthus annuus HOM05D005368 ORTHO05D006417 2.1e-15 86.7 56 73.2
SMO223G0026 Selaginella moellendorffii HOM05D000032 ORTHO05D004142 6.0e-15 85.1 84 48.8
SMO159G0001 Selaginella moellendorffii HOM05D005368 ORTHO05D006417 1.3e-14 84.0 78 52.6
MD05G1026100 Malus domestica HOM05D005333 ORTHO05D005776 4.3e-13 79.0 58 72.4
BcaNung04613 Brassica carinata HOM05D005368 ORTHO05D006417 1.3e-12 77.4 55 63.6
BcaNung02377 Brassica carinata HOM05D005368 ORTHO05D006417 2.6e-10 69.7 46 65.2
MCO15G169 Micromonas commoda HOM05D005368 ORTHO05D006417 3.4e-10 69.3 67 46.3
VMungo0540G1094 Vigna mungo HOM05D003030 ORTHO05D006417 4.5e-10 68.9 110 40.0


User provided reference genes

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