Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G32170 Trifolium pratense HOM05D004463 ORTHO05D004724 9.0e-69 264.2 227 100.0
Ca_15338_v3 Cicer arietinum L. HOM05D004463 ORTHO05D004724 1.5e-23 114.0 65 96.9
Glyma.06G008500 Glycine max HOM05D004463 ORTHO05D004724 2.0e-23 113.6 129 93.0
Lj1g0018700 Lotus japonicus HOM05D004463 ORTHO05D004724 5.7e-23 112.1 129 92.2
arahy.Tifrunner.gnm1.ann1.0JY1T4 Arachis hypogaea HOM05D004463 ORTHO05D004724 7.5e-23 111.7 129 92.2
arahy.Tifrunner.gnm1.ann1.2L6AT5 Arachis hypogaea HOM05D004463 ORTHO05D004724 7.5e-23 111.7 129 92.2
Phvul.009G003600 Phaseolus vulgaris HOM05D004463 ORTHO05D004724 7.5e-23 111.7 129 92.2
VMungo1309G0843 Vigna mungo HOM05D000018 ORTHO05D001040 7.5e-23 111.7 129 92.2
QL11p046341 Quercus lobata HOM05D004463 ORTHO05D004724 9.8e-23 111.3 65 93.8
Lalb_Chr23g0265191 Lupinus albus HOM05D004463 ORTHO05D004724 2.2e-22 110.2 129 91.5
Glyma.04G008700 Glycine max HOM05D004463 ORTHO05D004724 3.7e-22 109.4 129 86.8
CsaV3_7G000350 Cucumis sativus L. HOM05D004463 ORTHO05D004724 4.9e-22 109.0 129 90.7
Psat5g004520 Pisum sativum HOM05D004463 ORTHO05D004724 6.3e-22 108.6 65 84.6
CANSAT11G2458 Cannabis sativa HOM05D004463 ORTHO05D004724 1.1e-21 107.8 129 89.9
ClCG02G004610 Citrullus lanatus HOM05D004463 ORTHO05D004724 1.1e-21 107.8 65 90.8
MELO3C013423.2 Cucumis melo HOM05D004463 ORTHO05D004724 1.1e-21 107.8 65 90.8
Psat5g004400 Pisum sativum HOM05D004463 ORTHO05D004724 1.1e-21 107.8 67 94.0
Cpa.g.sc150.22 Carica papaya HOM05D004463 ORTHO05D004724 1.4e-21 107.5 65 90.8
Prupe.8G085500 Prunus persica HOM05D004463 ORTHO05D004724 7.0e-21 105.1 130 90.0
MD10G1063900 Malus domestica HOM05D004463 ORTHO05D004724 9.1e-21 104.8 130 90.0
COL.COLO4_26036 Corchorus olitorius HOM05D004463 ORTHO05D004724 1.2e-20 104.4 65 87.7
Thecc.02G075900 Theobroma cacao HOM05D004463 ORTHO05D004724 1.2e-20 104.4 65 87.7
CiPaw.06G128800 Carya illinoinensis HOM05D004463 ORTHO05D004724 2.0e-20 103.6 65 78.5
RcHm_v2.0_Chr6g0267601 Rosa chinensis HOM05D004463 ORTHO05D004724 2.0e-20 103.6 67 76.1
Duzib248G1389 Durio zibethinus HOM05D004463 ORTHO05D004724 4.5e-20 102.4 129 88.4
CiPaw.13G045000 Carya illinoinensis HOM05D004463 ORTHO05D004724 5.9e-20 102.1 51 90.2
MD00G1040200 Malus domestica HOM05D004463 ORTHO05D004724 5.9e-20 102.1 130 90.8
CiPaw.14G035900 Carya illinoinensis HOM05D004463 ORTHO05D004724 1.3e-19 100.9 115 88.7
Gohir.A03G199000 Gossypium hirsutum HOM05D004463 ORTHO05D004724 1.3e-19 100.9 65 83.1
Gohir.D02G220400 Gossypium hirsutum HOM05D004463 ORTHO05D004724 1.3e-19 100.9 65 83.1
Gorai.005G248300 Gossypium raimondii HOM05D004463 ORTHO05D004724 1.3e-19 100.9 65 83.1
Sed0022229 Sechium edule HOM05D004463 ORTHO05D004724 1.3e-19 100.9 66 87.9
PGR042G1049 Punica granatum HOM05D004463 ORTHO05D004724 5.0e-19 99.0 65 76.9
Ciclev10029089m.g Citrus clementina HOM05D004463 ORTHO05D004724 8.6e-19 98.2 65 83.1
Sed0016215 Sechium edule HOM05D004463 ORTHO05D004724 1.1e-18 97.8 67 86.6
Manes.15G189900 Manihot esculenta HOM05D004463 ORTHO05D004724 1.5e-18 97.4 65 73.8
TPR.G32219 Trifolium pratense HOM05D004463 ORTHO05D004724 1.5e-18 97.4 69 81.2
Dinv42004 Davidia involucrata HOM05D004463 ORTHO05D004724 2.5e-18 96.7 65 72.3
Potri.004G161800 Populus trichocarpa HOM05D004463 ORTHO05D004724 4.3e-18 95.9 131 84.7
GSVIVG01024180001 Vitis vinifera HOM05D004463 ORTHO05D004724 4.3e-18 95.9 115 91.3
ECA232G1454 Erigeron canadensis HOM05D004463 ORTHO05D004724 9.5e-18 94.7 129 78.3
Atru.chr5.3137 Acer truncatum HOM05D004463 ORTHO05D004724 1.6e-17 94.0 66 81.8
Manes.17G001400 Manihot esculenta HOM05D004463 ORTHO05D004724 2.1e-17 93.6 67 82.1
Cc02_g16980 Coffea canephora HOM05D004463 ORTHO05D004724 2.8e-17 93.2 129 86.0
Eucgr.I01324 Eucalyptus grandis HOM05D004463 ORTHO05D004724 3.6e-17 92.8 65 69.2
FvH4_2g10323 Fragaria vesca HOM05D004463 ORTHO05D004724 4.7e-17 92.4 53 79.2
FAN15G3389 Fragaria x ananassa HOM05D004463 ORTHO05D004724 4.7e-17 92.4 53 79.2
FAN20G1990 Fragaria x ananassa HOM05D004463 ORTHO05D004724 4.7e-17 92.4 53 79.2
FAN24G1814 Fragaria x ananassa HOM05D004463 ORTHO05D004724 4.7e-17 92.4 53 79.2
FAN27G0878 Fragaria x ananassa HOM05D004463 ORTHO05D004724 4.7e-17 92.4 53 79.2
Peaxi162Scf00538g00125 Petunia axillaris HOM05D004463 ORTHO05D004724 4.7e-17 92.4 65 76.9
HanXRQChr05g0143421 Helianthus annuus HOM05D004463 ORTHO05D004724 1.0e-16 91.3 65 76.9
DCAR_022913 Daucus carota HOM05D004463 ORTHO05D004724 3.0e-16 89.7 115 84.3
Nitab4.5_0001317g0040 Nicotiana tabacum HOM05D004463 ORTHO05D004724 5.2e-16 89.0 51 76.5
Sabra04G0108800 Salix brachista HOM05D004463 ORTHO05D004724 5.2e-16 89.0 48 79.2
Dinv23459 Davidia involucrata HOM05D004463 ORTHO05D004724 6.8e-16 88.6 65 67.7
Duzib052G0336 Durio zibethinus HOM05D004463 ORTHO05D004724 8.9e-16 88.2 51 76.5
TWI31G1301 Tripterygium wilfordii HOM05D004463 ORTHO05D004724 8.9e-16 88.2 64 67.2
Oeu036635.1 Olea europaea HOM05D004463 ORTHO05D004724 1.2e-15 87.8 50 74.0
THA.LOC104804116 Tarenaya hassleriana HOM05D004463 ORTHO05D004724 1.2e-15 87.8 217 57.1
GSVIVG01009823001 Vitis vinifera HOM05D004463 ORTHO05D004724 1.2e-15 87.8 50 76.0
Actinidia27858 Actinidia chinensis HOM05D000578 ORTHO05D000422 1.5e-15 87.4 65 76.9
THA.LOC104807766 Tarenaya hassleriana HOM05D004463 ORTHO05D004724 1.5e-15 87.4 46 78.3
Dinv39485 Davidia involucrata HOM05D004463 ORTHO05D004724 2.0e-15 87.0 50 78.0
A06p48750 Brassica napus HOM05D004463 ORTHO05D004724 5.7e-15 85.5 51 74.5
C07p63410 Brassica napus HOM05D004463 ORTHO05D004724 5.7e-15 85.5 51 74.5
BolC7t46753H Brassica oleracea HOM05D004463 ORTHO05D004724 5.7e-15 85.5 51 74.5
Oeu046135.1 Olea europaea HOM05D004463 ORTHO05D004724 5.7e-15 85.5 48 75.0
Hund26868 Selenicereus undatus HOM05D004463 ORTHO05D004724 5.7e-15 85.5 50 74.0
Solyc10g054330.3 Solanum lycopersicum HOM05D004463 ORTHO05D004724 9.8e-15 84.7 53 73.6
Hma1.2p1_0066F.1_g035800 Hydrangea macrophylla HOM05D004463 ORTHO05D004724 1.3e-14 84.3 71 70.4
Sopen10g024240 Solanum pennellii HOM05D004463 ORTHO05D004724 1.3e-14 84.3 54 72.2
PGSC0003DMG400026665 Solanum tuberosum HOM05D004463 ORTHO05D004724 1.3e-14 84.3 54 72.2
Actinidia00571 Actinidia chinensis HOM05D004463 ORTHO05D004724 1.7e-14 84.0 65 67.7
Manes.05G152600 Manihot esculenta HOM05D004463 ORTHO05D004724 2.2e-14 83.6 51 72.5
Oeu055628.1 Olea europaea HOM05D004463 ORTHO05D004724 2.9e-14 83.2 50 72.0
THA.LOC104813804 Tarenaya hassleriana HOM05D004463 ORTHO05D004724 3.7e-14 82.8 65 69.2
BraA06t27741Z Brassica rapa HOM05D004463 ORTHO05D004724 1.4e-13 80.9 52 73.1
Rhsim11G0183400 Rhododendron simsii HOM05D000078 ORTHO05D004724 1.4e-13 80.9 65 66.2
Sc25g0002840 Simmondsia chinensis HOM05D004463 ORTHO05D004724 1.4e-13 80.9 50 70.0
Atru.chr13.360 Acer truncatum HOM05D004463 ORTHO05D004724 1.8e-13 80.5 50 72.0
Migut.B00180 Erythranthe guttata HOM05D004463 ORTHO05D004724 1.8e-13 80.5 115 85.2
Rhsim05G0068600 Rhododendron simsii HOM05D004463 ORTHO05D004724 4.1e-13 79.3 76 68.4
CARHR247750 Cardamine hirsuta HOM05D004463 ORTHO05D004724 7.0e-13 78.6 51 64.7
Thecc.08G037600 Theobroma cacao HOM05D004463 ORTHO05D004724 9.2e-13 78.2 51 68.6
Os10g0545300 Oryza sativa ssp. japonica HOM05D004463 ORTHO05D004724 1.2e-12 77.8 52 69.2
Hund00218 Selenicereus undatus HOM05D004463 ORTHO05D004724 4.6e-12 75.9 48 66.7
HPP92_007058 Vanilla planifolia HOM05D004463 ORTHO05D004724 4.6e-12 75.9 48 72.9
HPP92_007060 Vanilla planifolia HOM05D004463 ORTHO05D004724 4.6e-12 75.9 48 72.9
CDE02G2851 Ceratophyllum demersum HOM05D003292 ORTHO05D004237 7.8e-12 75.1 48 70.8
CAN.G95.2 Capsicum annuum HOM05D004463 ORTHO05D004724 1.3e-11 74.3 61 59.0
PSO648G0094 Papaver somniferum HOM05D004463 ORTHO05D004724 3.0e-11 73.2 65 55.4
TAR369G0673 Trochodendron aralioides HOM05D004463 ORTHO05D004724 3.0e-11 73.2 51 68.6
AUR62014431 Chenopodium quinoa HOM05D004463 ORTHO05D004724 3.9e-11 72.8 44 70.5
PSO339G5998 Papaver somniferum HOM05D004463 ORTHO05D004724 3.9e-11 72.8 50 66.0
Potri.005G234700 Populus trichocarpa HOM05D004463 ORTHO05D004724 5.0e-11 72.4 56 62.5
Zm00001eb393940 Zea mays HOM05D004463 ORTHO05D004724 5.0e-11 72.4 52 65.4
A07p41130 Brassica napus HOM05D004463 ORTHO05D004724 6.6e-11 72.0 52 61.5
AL7G10930 Arabidopsis lyrata HOM05D004463 ORTHO05D004724 8.6e-11 71.6 49 67.3
C06p49550 Brassica napus HOM05D004463 ORTHO05D004724 8.6e-11 71.6 52 61.5
BolC6t39994H Brassica oleracea HOM05D004463 ORTHO05D004724 8.6e-11 71.6 52 61.5
Ciclev10002195m.g Citrus clementina HOM05D004463 ORTHO05D004724 8.6e-11 71.6 50 64.0
AL2G35540 Arabidopsis lyrata HOM05D004463 ORTHO05D004724 1.1e-10 71.2 49 61.2
Carub.0002s2242 Capsella rubella HOM05D004463 ORTHO05D004724 1.1e-10 71.2 49 61.2
TWI36G1578 Tripterygium wilfordii HOM05D004463 ORTHO05D004724 1.5e-10 70.9 51 62.7
THA.LOC104809337 Tarenaya hassleriana HOM05D004463 ORTHO05D004724 2.5e-10 70.1 50 62.0
Sabra05G0180900 Salix brachista HOM05D004463 ORTHO05D004724 3.3e-10 69.7 56 58.9
SGA_v2.0_scaffold326G48748 Striga asiatica HOM05D004463 ORTHO05D004724 3.3e-10 69.7 51 60.8
SEGI_31170 Sequoiadendron giganteum HOM05D004463 ORTHO05D004724 9.5e-10 68.2 54 64.8
Thhalv10019006m.g Eutrema salsugineum HOM05D004463 ORTHO05D004724 1.2e-09 67.8 47 66.0
TAR636G2492 Trochodendron aralioides HOM05D004463 ORTHO05D004724 2.8e-09 66.6 51 64.7
AT1G75560 Arabidopsis thaliana HOM05D004463 ORTHO05D004724 3.6e-09 66.2 51 58.8
Sp5g30690 Schrenkiella parvula HOM05D004463 ORTHO05D004724 3.6e-09 66.2 47 63.8
Aa31LG4G5800 Aethionema arabicum HOM05D004463 ORTHO05D004724 4.7e-09 65.9 52 57.7
PSO339G4128 Papaver somniferum HOM05D004463 ORTHO05D004724 8.0e-09 65.1 50 62.0
PSO384G1624 Papaver somniferum HOM05D004463 ORTHO05D004724 8.0e-09 65.1 50 62.0
AUR62034566 Chenopodium quinoa HOM05D004463 ORTHO05D004724 1.8e-08 63.9 58 53.4
Lsat_1_v5_gn_8_16561 Lactuca sativa HOM05D004463 ORTHO05D004724 1.8e-08 63.9 53 62.3
Lj8C86T7 Lonicera japonica HOM05D004463 ORTHO05D004724 2.3e-08 63.5 43 69.8
Aqoxy4G02979 Aquilegia oxysepala HOM05D004463 ORTHO05D004724 3.1e-08 63.2 56 57.1
COL.COLO4_14964 Corchorus olitorius HOM05D004463 ORTHO05D004724 5.2e-08 62.4 51 58.8
GSVIVG01011366001 Vitis vinifera HOM05D002216 ORTHO05D002011 6.8e-08 62.0 51 60.8
ECA233G0628 Erigeron canadensis HOM05D001446 ORTHO05D001360 8.9e-08 61.6 52 55.8
Rhsim09G0164600 Rhododendron simsii HOM05D004463 ORTHO05D004724 1.2e-07 61.2 51 56.9
CSS0035906 Camellia sinensis var. sinensis HOM05D004463 ORTHO05D004724 1.5e-07 60.8 51 58.8
Duzib106G1221 Durio zibethinus HOM05D004463 ORTHO05D004724 2.6e-07 60.1 51 58.8
Haze_03437 Corylus avellana HOM05D004463 ORTHO05D004724 3.4e-07 59.7 88 96.6
Thecc.10G047100 Theobroma cacao HOM05D004463 ORTHO05D004724 3.4e-07 59.7 51 56.9
GSVIVG01016581001 Vitis vinifera HOM05D004463 ORTHO05D004724 3.4e-07 59.7 51 58.8
Gohir.D10G224732 Gossypium hirsutum HOM05D004463 ORTHO05D004724 5.8e-07 58.9 42 64.3
Hma1.2p1_0727F.1_g209210 Hydrangea macrophylla HOM05D004463 ORTHO05D004724 7.5e-07 58.5 49 57.1
Dinv25993 Davidia involucrata HOM05D004463 ORTHO05D004724 9.8e-07 58.2 43 60.5
QL08p059074 Quercus lobata HOM05D004463 ORTHO05D004724 9.8e-07 58.2 48 58.3
TWI75G1243 Tripterygium wilfordii HOM05D004463 ORTHO05D004724 9.8e-07 58.2 61 55.7
EL10Ac1g00556 Beta vulgaris HOM05D004463 ORTHO05D004724 1.3e-06 57.8 93 36.6
Nn6g32238 Nelumbo nucifera HOM05D004463 ORTHO05D004724 1.3e-06 57.8 34 76.5
Cfa001504 Carpinus fangiana HOM05D001680 ORTHO05D001596 1.7e-06 57.4 43 62.8
Haze_17039 Corylus avellana HOM05D001446 ORTHO05D001360 1.7e-06 57.4 43 62.8
Manes.10G032800 Manihot esculenta HOM05D004463 ORTHO05D004724 2.2e-06 57.0 50 52.0
Gorai.011G255700 Gossypium raimondii HOM05D004463 ORTHO05D004724 4.9e-06 55.8 50 56.0
Prupe.2G231800 Prunus persica HOM05D004463 ORTHO05D004724 4.9e-06 55.8 49 55.1
FAN10G2262 Fragaria x ananassa HOM05D004463 ORTHO05D004724 6.4e-06 55.5 43 60.5
RcHm_v2.0_Chr1g0366331 Rosa chinensis HOM05D004463 ORTHO05D004724 6.4e-06 55.5 43 60.5
FvH4_7g21972 Fragaria vesca HOM05D004463 ORTHO05D004724 8.3e-06 55.1 49 57.1
FAN01G1741 Fragaria x ananassa HOM05D004463 ORTHO05D004724 8.3e-06 55.1 49 57.1
FAN06G0682 Fragaria x ananassa HOM05D004463 ORTHO05D004724 8.3e-06 55.1 49 57.1
FAN06G1248 Fragaria x ananassa HOM05D004463 ORTHO05D004724 8.3e-06 55.1 49 57.1
MBI19_g03564_MAGBIO Magnolia biondii HOM05D004463 ORTHO05D004724 8.3e-06 55.1 92 91.3


User provided reference genes

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