Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G32159 Trifolium pratense HOM05D000874 ORTHO05D001049 8.8e-93 343.6 170 100.0
TPR.G7022 Trifolium pratense HOM05D000874 ORTHO05D001049 8.6e-32 141.0 125 64.8
Psat3g036200 Pisum sativum HOM05D000874 ORTHO05D001049 1.7e-24 116.7 79 74.7
Medtr7g103560 Medicago truncatula HOM05D000874 ORTHO05D001049 2.3e-24 116.3 127 55.1
Medtr7g103570 Medicago truncatula HOM05D000874 ORTHO05D001049 4.3e-23 112.1 117 54.7
TPR.G36190 Trifolium pratense HOM05D000874 ORTHO05D001049 5.6e-23 111.7 79 69.6
VMungo1383G3000 Vigna mungo HOM05D000874 ORTHO05D001049 3.8e-19 99.0 82 63.4
Glyma.19G190500 Glycine max HOM05D000874 ORTHO05D001049 3.2e-18 95.9 81 65.4
FvH4_6g17650 Fragaria vesca HOM05D000874 ORTHO05D001049 1.6e-17 93.6 77 61.0
FvH4_6g18040 Fragaria vesca HOM05D000874 ORTHO05D001049 1.6e-17 93.6 75 58.7
FAN05G3328 Fragaria x ananassa HOM05D000874 ORTHO05D001049 2.1e-17 93.2 77 59.7
FAN05G3737 Fragaria x ananassa HOM05D000874 ORTHO05D001049 2.1e-17 93.2 77 59.7
MD14G1014000 Malus domestica HOM05D000874 ORTHO05D001049 2.7e-17 92.8 77 55.8
FAN05G1754 Fragaria x ananassa HOM05D000874 ORTHO05D001049 4.6e-17 92.0 123 45.5
FAN05G3374 Fragaria x ananassa HOM05D000874 ORTHO05D001049 4.6e-17 92.0 123 45.5
HanXRQChr01g0028361 Helianthus annuus HOM05D000874 ORTHO05D001049 4.6e-17 92.0 80 57.5
Psat3g036280 Pisum sativum HOM05D000874 ORTHO05D001049 4.6e-17 92.0 86 55.8
RcHm_v2.0_Chr4g0442541 Rosa chinensis HOM05D000874 ORTHO05D001049 7.8e-17 91.3 76 56.6
EL10Ac7g17010 Beta vulgaris HOM05D000874 ORTHO05D001049 1.0e-16 90.9 80 57.5
Medtr7g103410 Medicago truncatula HOM05D000874 ORTHO05D001049 1.0e-16 90.9 129 48.1
FAN02G0261 Fragaria x ananassa HOM05D000874 ORTHO05D001049 1.3e-16 90.5 77 58.4
TAR369G1004 Trochodendron aralioides HOM05D000874 ORTHO05D001049 1.3e-16 90.5 97 50.5
FAN14G2137 Fragaria x ananassa HOM05D000874 ORTHO05D001049 5.1e-16 88.6 112 46.4
FAN02G2438 Fragaria x ananassa HOM05D000874 ORTHO05D001049 6.6e-16 88.2 81 58.0
FAN02G4103 Fragaria x ananassa HOM05D000874 ORTHO05D001049 6.6e-16 88.2 81 58.0
HanXRQChr01g0028371 Helianthus annuus HOM05D000874 ORTHO05D001049 6.6e-16 88.2 80 55.0
RcHm_v2.0_Chr3g0472301 Rosa chinensis HOM05D000874 ORTHO05D001049 6.6e-16 88.2 72 56.9
TPR.G28361 Trifolium pratense HOM05D000874 ORTHO05D001049 6.6e-16 88.2 157 40.8
Sp4g18840 Schrenkiella parvula HOM05D000874 ORTHO05D001049 1.1e-15 87.4 94 50.0
FAN09G2693 Fragaria x ananassa HOM05D000874 ORTHO05D001049 1.5e-15 87.0 77 58.4
Lalb_Chr20g0112271 Lupinus albus HOM05D000874 ORTHO05D001049 1.5e-15 87.0 78 57.7
Sed0024499 Sechium edule HOM05D000874 ORTHO05D001049 1.5e-15 87.0 81 55.6
Prupe.7G119400 Prunus persica HOM05D000874 ORTHO05D001049 1.9e-15 86.7 80 55.0
TAR369G0434 Trochodendron aralioides HOM05D000874 ORTHO05D001049 1.9e-15 86.7 77 54.5
CARHR130830 Cardamine hirsuta HOM05D000874 ORTHO05D001049 2.5e-15 86.3 81 56.8
ClCG04G009700 Citrullus lanatus HOM05D000874 ORTHO05D001049 2.5e-15 86.3 81 59.3
MD14G1014100 Malus domestica HOM05D000874 ORTHO05D001049 2.5e-15 86.3 77 53.2
AT2G36540 Arabidopsis thaliana HOM05D000874 ORTHO05D001049 3.3e-15 85.9 81 56.8
CsaV3_6G040360 Cucumis sativus L. HOM05D000874 ORTHO05D001049 3.3e-15 85.9 97 50.5
FvH4_6g17690 Fragaria vesca HOM05D000874 ORTHO05D001049 3.3e-15 85.9 77 51.9
TAR369G0865 Trochodendron aralioides HOM05D000874 ORTHO05D001049 3.3e-15 85.9 77 53.2
Cpa.g.sc5.93 Carica papaya HOM05D000874 ORTHO05D001049 4.3e-15 85.5 76 56.6
FAN09G3505 Fragaria x ananassa HOM05D000874 ORTHO05D001049 4.3e-15 85.5 73 53.4
Carub.0004s1835 Capsella rubella HOM05D000874 ORTHO05D001049 5.6e-15 85.1 81 56.8
Lj2A127G88 Lonicera japonica HOM05D000874 ORTHO05D001049 5.6e-15 85.1 79 51.9
PGSC0003DMG402002685 Solanum tuberosum HOM05D000874 ORTHO05D001049 7.3e-15 84.7 81 54.3
Cfa016522 Carpinus fangiana HOM05D000874 ORTHO05D001049 9.6e-15 84.3 82 56.1
Thhalv10027102m.g Eutrema salsugineum HOM05D000874 ORTHO05D001049 9.6e-15 84.3 81 54.3
Lsat_1_v5_gn_1_50520 Lactuca sativa HOM05D000874 ORTHO05D001049 9.6e-15 84.3 80 52.5
Nitab4.5_0010125g0010 Nicotiana tabacum HOM05D000874 ORTHO05D001049 9.6e-15 84.3 79 58.2
Peaxi162Scf00412g00713 Petunia axillaris HOM05D000874 ORTHO05D001049 9.6e-15 84.3 76 57.9
Oeu023847.1 Olea europaea HOM05D000874 ORTHO05D001049 1.3e-14 84.0 79 59.5
THA.LOC104823468 Tarenaya hassleriana HOM05D000874 ORTHO05D001049 1.6e-14 83.6 80 53.8
TAR369G0064 Trochodendron aralioides HOM05D000874 ORTHO05D001049 1.6e-14 83.6 139 37.4
AL4G32720 Arabidopsis lyrata HOM05D000874 ORTHO05D001049 6.2e-14 81.6 122 44.3
Carub.0004s1834 Capsella rubella HOM05D000874 ORTHO05D001049 6.2e-14 81.6 109 45.9
Ciclev10013817m.g Citrus clementina HOM05D000874 ORTHO05D001049 6.2e-14 81.6 79 53.2
TWI53G1141 Tripterygium wilfordii HOM05D000874 ORTHO05D001049 6.2e-14 81.6 80 53.8
BcaC02g11772 Brassica carinata HOM05D000874 ORTHO05D001049 8.1e-14 81.3 83 54.2
C04p11560 Brassica napus HOM05D000874 ORTHO05D001049 8.1e-14 81.3 83 54.2
FAN14G2202 Fragaria x ananassa HOM05D000874 ORTHO05D001049 8.1e-14 81.3 81 49.4
BolC4t22804H Brassica oleracea HOM05D000874 ORTHO05D001049 1.1e-13 80.9 83 54.2
FAN14G2556 Fragaria x ananassa HOM05D000874 ORTHO05D001049 1.1e-13 80.9 75 53.3
CAN.G824.44 Capsicum annuum HOM05D000874 ORTHO05D001049 1.4e-13 80.5 78 55.1
Oeu023851.2 Olea europaea HOM05D000874 ORTHO05D001049 1.4e-13 80.5 80 56.2
ECA248G2582 Erigeron canadensis HOM05D000874 ORTHO05D001049 1.8e-13 80.1 75 50.7
TWI53G0240 Tripterygium wilfordii HOM05D000874 ORTHO05D001049 1.8e-13 80.1 80 51.2
Potri.010G244200 Populus trichocarpa HOM05D000874 ORTHO05D001049 2.4e-13 79.7 79 50.6
A05p09260 Brassica napus HOM05D000183 ORTHO05D000100 3.1e-13 79.3 83 53.0
BraA05t19883Z Brassica rapa HOM05D000874 ORTHO05D001049 3.1e-13 79.3 83 53.0
Cfa016521 Carpinus fangiana HOM05D000874 ORTHO05D001049 3.1e-13 79.3 80 51.2
CiPaw.10G004500 Carya illinoinensis HOM05D000874 ORTHO05D001049 3.1e-13 79.3 77 50.6
Oeu040546.1 Olea europaea HOM05D000874 ORTHO05D001049 3.1e-13 79.3 81 54.3
Solyc09g008960.2 Solanum lycopersicum HOM05D000874 ORTHO05D001049 3.1e-13 79.3 80 53.8
Solyc09g008950.1 Solanum lycopersicum HOM05D000874 ORTHO05D001049 4.0e-13 79.0 80 56.2
A04p28040 Brassica napus HOM05D000874 ORTHO05D001049 5.3e-13 78.6 121 43.0
FAN05G0832 Fragaria x ananassa HOM05D000874 ORTHO05D001049 6.9e-13 78.2 81 46.9
HanXRQChr11g0351081 Helianthus annuus HOM05D000874 ORTHO05D001049 6.9e-13 78.2 82 47.6
MSTRG.26656 Avicennia marina HOM05D000874 ORTHO05D001049 1.2e-12 77.4 80 53.8
DCAR_013957 Daucus carota HOM05D000874 ORTHO05D001049 1.2e-12 77.4 120 40.0
RcHm_v2.0_Chr3g0471881 Rosa chinensis HOM05D000874 ORTHO05D001049 1.2e-12 77.4 72 56.9
VMungo1383G1800 Vigna mungo HOM05D000874 ORTHO05D001049 1.2e-12 77.4 65 58.5
BcaC02g07585 Brassica carinata HOM05D000874 ORTHO05D001049 1.5e-12 77.0 122 42.6
BolC4t28033H Brassica oleracea HOM05D000874 ORTHO05D001049 1.5e-12 77.0 122 42.6
Lsat_1_v5_gn_1_50460 Lactuca sativa HOM05D000874 ORTHO05D001049 2.0e-12 76.6 80 45.0
Rhsim03G0082400 Rhododendron simsii HOM05D000874 ORTHO05D001049 2.6e-12 76.3 91 47.3
BcaB02g09347 Brassica carinata HOM05D000874 ORTHO05D001049 3.4e-12 75.9 84 50.0
BraA04t18291Z Brassica rapa HOM05D000874 ORTHO05D001049 3.4e-12 75.9 120 42.5
vmacro07376 Vaccinium macrocarpon HOM05D000874 ORTHO05D001049 3.4e-12 75.9 87 50.6
AUR62033596 Chenopodium quinoa HOM05D000874 ORTHO05D001049 4.5e-12 75.5 77 46.8
Haze_19522 Corylus avellana HOM05D000874 ORTHO05D001049 4.5e-12 75.5 80 48.8
MD14G1013900 Malus domestica HOM05D000874 ORTHO05D001049 5.8e-12 75.1 78 48.7
Sp4g18830 Schrenkiella parvula HOM05D000874 ORTHO05D001049 7.6e-12 74.7 81 49.4
Cc06_g05100 Coffea canephora HOM05D000874 ORTHO05D001049 9.9e-12 74.3 77 53.2
Aa31LG5G21760 Aethionema arabicum HOM05D000874 ORTHO05D001049 1.3e-11 73.9 103 42.7
AUR62033594 Chenopodium quinoa HOM05D000874 ORTHO05D001049 1.3e-11 73.9 73 52.1
Haze_19523 Corylus avellana HOM05D000874 ORTHO05D001049 1.3e-11 73.9 78 53.8
Cpa.g.sc5.90 Carica papaya HOM05D000874 ORTHO05D001049 1.7e-11 73.6 74 50.0
Migut.L01749 Erythranthe guttata HOM05D000874 ORTHO05D001049 1.7e-11 73.6 80 50.0
Atru.chr8.1656 Acer truncatum HOM05D000874 ORTHO05D001049 2.9e-11 72.8 84 54.8
Ah.08g211030 Amaranthus hybridus HOM05D000874 ORTHO05D001049 2.9e-11 72.8 82 43.9
Nn6g35077 Nelumbo nucifera HOM05D000874 ORTHO05D001049 2.9e-11 72.8 57 57.9
HanXRQChr11g0351071 Helianthus annuus HOM05D000874 ORTHO05D001049 3.8e-11 72.4 84 42.9
Rhsim03G0082500 Rhododendron simsii HOM05D000874 ORTHO05D001049 3.8e-11 72.4 80 51.2
GSVIVG01033766001 Vitis vinifera HOM05D000874 ORTHO05D001049 3.8e-11 72.4 83 51.8
ECA248G1348 Erigeron canadensis HOM05D000874 ORTHO05D001049 4.9e-11 72.0 92 39.1
AUR62037888 Chenopodium quinoa HOM05D000874 ORTHO05D001049 6.4e-11 71.6 77 46.8
THA.LOC104823469 Tarenaya hassleriana HOM05D000874 ORTHO05D001049 6.4e-11 71.6 117 41.9
Atru.chr8.1657 Acer truncatum HOM05D000874 ORTHO05D001049 8.4e-11 71.2 77 53.2
Lsat_1_v5_gn_1_50480 Lactuca sativa HOM05D000874 ORTHO05D001049 8.4e-11 71.2 79 46.8
Potri.010G244400 Populus trichocarpa HOM05D000874 ORTHO05D001049 8.4e-11 71.2 79 46.8
COL.COLO4_29833 Corchorus olitorius HOM05D000874 ORTHO05D001049 1.1e-10 70.9 88 48.9
EL10Ac7g17013 Beta vulgaris HOM05D000874 ORTHO05D001049 1.4e-10 70.5 95 43.2
RcHm_v2.0_Chr3g0471901 Rosa chinensis HOM05D000874 ORTHO05D001049 7.1e-10 68.2 70 54.3
Oeu040547.1 Olea europaea HOM05D000874 ORTHO05D001049 1.2e-09 67.4 76 50.0
SGA_v2.0_scaffold184G39919 Striga asiatica HOM05D000874 ORTHO05D001049 2.1e-09 66.6 73 47.9
SGA_v2.0_scaffold184G39911 Striga asiatica HOM05D000874 ORTHO05D001049 3.5e-09 65.9 73 47.9
TPR.G32166 Trifolium pratense HOM05D000874 ORTHO05D412625 3.5e-09 65.9 40 82.5
TPR.G40445 Trifolium pratense HOM05D000874 ORTHO05D001049 6.0e-09 65.1 52 65.4
Thecc.05G079800 Theobroma cacao HOM05D000874 ORTHO05D001049 7.9e-09 64.7 69 53.6
Cfa016523 Carpinus fangiana HOM05D000874 ORTHO05D001049 1.3e-08 63.9 95 44.2
Manes.09G060716 Manihot esculenta HOM05D000874 ORTHO05D001049 1.8e-08 63.5 74 47.3
QL07p040759 Quercus lobata HOM05D000874 ORTHO05D001049 2.3e-08 63.2 47 59.6
TPR.G429 Trifolium pratense HOM05D000002 ORTHO05D000001 2.3e-08 63.2 47 61.7
TPR.G18919 Trifolium pratense HOM05D000002 ORTHO05D000001 3.9e-08 62.4 47 59.6
Oeu040548.1 Olea europaea HOM05D000874 ORTHO05D001049 6.7e-08 61.6 66 45.5
Prupe.7G119500 Prunus persica HOM05D000874 ORTHO05D001049 6.7e-08 61.6 112 38.4
Medtr7g015130 Medicago truncatula HOM05D000874 ORTHO05D001049 8.7e-08 61.2 67 47.8
Nitab4.5_0001922g0080 Nicotiana tabacum HOM05D000874 ORTHO05D001049 1.5e-07 60.5 79 46.8
TPR.G19316 Trifolium pratense HOM05D000002 ORTHO05D000001 1.5e-07 60.5 47 59.6
MBI01_g14106_MAGBIO Magnolia biondii HOM05D000874 ORTHO05D001049 1.9e-07 60.1 65 43.1
Rhsim08G0075500 Rhododendron simsii HOM05D000874 ORTHO05D001049 3.3e-07 59.3 88 42.0
ClCG07G016520 Citrullus lanatus HOM05D000874 ORTHO05D001049 4.3e-07 58.9 80 43.8
SEGI_29202 Sequoiadendron giganteum HOM05D000874 ORTHO05D001049 4.3e-07 58.9 66 45.5
SEGI_35425 Sequoiadendron giganteum HOM05D000874 ORTHO05D001049 4.3e-07 58.9 66 45.5
Gohir.A09G008700 Gossypium hirsutum HOM05D000874 ORTHO05D001049 7.4e-07 58.2 82 42.7
ATR0177G002 Amborella trichopoda HOM05D000874 ORTHO05D001049 1.3e-06 57.4 67 41.8
MELO3C024511.2 Cucumis melo HOM05D000874 ORTHO05D001049 1.3e-06 57.4 74 47.3
unitig_899.g15103 Utricularia gibba HOM05D000874 ORTHO05D001049 1.3e-06 57.4 66 45.5
vmacro18143 Vaccinium macrocarpon HOM05D000874 ORTHO05D001049 2.1e-06 56.6 82 41.5
Sed0009455 Sechium edule HOM05D000874 ORTHO05D001049 2.8e-06 56.2 64 48.4
Thhalv10004387m.g Eutrema salsugineum HOM05D000874 ORTHO05D001049 3.7e-06 55.8 64 50.0
MBI01_g14100_MAGBIO Magnolia biondii HOM05D000874 ORTHO05D001049 3.7e-06 55.8 94 36.2
C09p04330 Brassica napus HOM05D000874 ORTHO05D001049 4.8e-06 55.5 78 46.2
BolC9t53365H Brassica oleracea HOM05D000874 ORTHO05D001049 4.8e-06 55.5 78 46.2
MELO3C017233.2 Cucumis melo HOM05D000874 ORTHO05D001049 4.8e-06 55.5 64 45.3
Gohir.D09G008000 Gossypium hirsutum HOM05D000874 ORTHO05D001049 4.8e-06 55.5 64 45.3
Gorai.006G009600 Gossypium raimondii HOM05D000874 ORTHO05D001049 4.8e-06 55.5 64 45.3
VMungo1309G3138 Vigna mungo HOM05D000874 ORTHO05D001267 4.8e-06 55.5 81 35.8
BcaB04g19518 Brassica carinata HOM05D000874 ORTHO05D001049 6.2e-06 55.1 69 46.4
COL.COLO4_37968 Corchorus olitorius HOM05D000874 ORTHO05D001049 6.2e-06 55.1 66 45.5
Sed0013303 Sechium edule HOM05D000874 ORTHO05D001049 6.2e-06 55.1 64 45.3
Cfa007680 Carpinus fangiana HOM05D000874 ORTHO05D001049 8.1e-06 54.7 98 35.7
AUR62037887 Chenopodium quinoa HOM05D000874 ORTHO05D001049 8.1e-06 54.7 27 81.5
ClCG06G015560 Citrullus lanatus HOM05D000874 ORTHO05D001049 8.1e-06 54.7 64 43.8
MD09G1068500 Malus domestica HOM05D000874 ORTHO05D001049 8.1e-06 54.7 75 40.0
Oeu040989.1 Olea europaea HOM05D001399 ORTHO05D001049 8.1e-06 54.7 75 36.0
QL02p067387 Quercus lobata HOM05D000874 ORTHO05D001049 8.1e-06 54.7 64 42.2


User provided reference genes

Program Settings