Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G32142 Trifolium pratense HOM05D006344 ORTHO05D007744 3.6e-296 1020.8 502 100.0
Medtr8g007155 Medicago truncatula HOM05D006344 ORTHO05D007744 8.8e-242 840.1 512 84.0
Psat4g223640 Pisum sativum HOM05D006344 ORTHO05D007744 7.2e-228 793.9 509 79.4
Ca_14805_v3 Cicer arietinum L. HOM05D006344 ORTHO05D007744 1.6e-227 792.7 492 81.3
Phvul.010G046700 Phaseolus vulgaris HOM05D006344 ORTHO05D007744 2.8e-211 738.8 506 74.1
VMungo0331G0733 Vigna mungo HOM05D006344 ORTHO05D007744 8.0e-211 737.3 507 74.2
Glyma.12G152700 Glycine max HOM05D006344 ORTHO05D007744 2.6e-209 732.3 512 73.0
Lj3g0017960 Lotus japonicus HOM05D006344 ORTHO05D007744 2.9e-208 728.8 512 73.6
Glyma.06G240000 Glycine max HOM05D006344 ORTHO05D007744 5.6e-204 714.5 509 71.7
Lalb_Chr12g0210531 Lupinus albus HOM05D006344 ORTHO05D007744 1.4e-199 699.9 489 72.8
arahy.Tifrunner.gnm1.ann1.6KIV37 Arachis hypogaea HOM05D006344 ORTHO05D007744 2.5e-196 689.1 511 69.9
arahy.Tifrunner.gnm1.ann1.7K9T15 Arachis hypogaea HOM05D006344 ORTHO05D007744 9.5e-196 687.2 511 69.7
Manes.05G055800 Manihot esculenta HOM05D006344 ORTHO05D007744 1.3e-181 640.2 503 65.4
MD07G1109900 Malus domestica HOM05D006344 ORTHO05D007744 1.5e-180 636.7 501 66.5
Prupe.2G133500 Prunus persica HOM05D006344 ORTHO05D007744 2.5e-180 636.0 507 66.3
Cfa011061 Carpinus fangiana HOM05D006344 ORTHO05D007744 5.6e-180 634.8 517 64.6
Potri.002G138600 Populus trichocarpa HOM05D006344 ORTHO05D007744 1.1e-178 630.6 508 62.8
Haze_02860 Corylus avellana HOM05D006344 ORTHO05D007744 5.8e-177 624.8 511 63.2
Duzib133G0621 Durio zibethinus HOM05D006344 ORTHO05D007744 1.7e-176 623.2 503 63.2
QL04p029920 Quercus lobata HOM05D006344 ORTHO05D007744 2.4e-175 619.4 507 62.9
CANSAT25G2006 Cannabis sativa HOM05D006344 ORTHO05D007744 1.6e-174 616.7 496 63.7
Eucgr.D01222 Eucalyptus grandis HOM05D006344 ORTHO05D007744 5.1e-173 611.7 441 67.8
Gohir.D12G100600 Gossypium hirsutum HOM05D006344 ORTHO05D007744 8.7e-173 610.9 503 64.0
Sabra02G0107400 Salix brachista HOM05D006344 ORTHO05D007744 5.6e-172 608.2 534 59.7
Cc02_g25170 Coffea canephora HOM05D006344 ORTHO05D007744 7.4e-172 607.8 520 60.8
Duzib138G0679 Durio zibethinus HOM05D006344 ORTHO05D007744 7.4e-172 607.8 515 62.3
Gohir.A12G097600 Gossypium hirsutum HOM05D006344 ORTHO05D007744 1.3e-171 607.1 503 63.4
Gorai.008G109500 Gossypium raimondii HOM05D006344 ORTHO05D007744 6.2e-171 604.7 505 62.6
Ciclev10019814m.g Citrus clementina HOM05D006344 ORTHO05D007744 1.1e-170 604.0 506 63.0
CSS0047635 Camellia sinensis var. sinensis HOM05D006344 ORTHO05D007744 2.4e-170 602.8 497 62.8
Thecc.01G396400 Theobroma cacao HOM05D006344 ORTHO05D007744 2.4e-170 602.8 486 64.4
RcHm_v2.0_Chr1g0348081 Rosa chinensis HOM05D006344 ORTHO05D007744 9.9e-169 597.4 506 63.2
Nn1g00813 Nelumbo nucifera HOM05D006344 ORTHO05D007744 6.4e-168 594.7 451 67.4
FvH4_7g10380 Fragaria vesca HOM05D006344 ORTHO05D007744 1.1e-167 594.0 503 62.2
FAN06G2435 Fragaria x ananassa HOM05D006344 ORTHO05D007744 1.1e-167 594.0 503 62.4
FAN06G3766 Fragaria x ananassa HOM05D006344 ORTHO05D007744 2.1e-166 589.7 500 62.4
FAN10G1159 Fragaria x ananassa HOM05D006344 ORTHO05D007744 3.5e-166 589.0 503 62.2
FAN10G0415 Fragaria x ananassa HOM05D006344 ORTHO05D007744 4.6e-166 588.6 503 62.2
CSS0005629 Camellia sinensis var. sinensis HOM05D006344 ORTHO05D007744 1.3e-165 587.0 532 59.2
Migut.B01523 Erythranthe guttata HOM05D006344 ORTHO05D007744 1.8e-165 586.6 442 66.1
MELO3C005945.2 Cucumis melo HOM05D006344 ORTHO05D007744 3.0e-165 585.9 503 61.6
Oeu011251.1 Olea europaea HOM05D006344 ORTHO05D007744 3.0e-165 585.9 478 61.7
MSTRG.20684 Avicennia marina HOM05D006344 ORTHO05D007744 3.9e-165 585.5 449 64.8
Aqoxy3G02683 Aquilegia oxysepala HOM05D006344 ORTHO05D007744 8.7e-165 584.3 505 61.6
THA.LOC104802498 Tarenaya hassleriana HOM05D006344 ORTHO05D007744 1.1e-164 583.9 503 60.6
A05p04940 Brassica napus HOM05D006344 ORTHO05D007744 1.9e-164 583.2 504 59.1
vmacro13505 Vaccinium macrocarpon HOM05D006344 ORTHO05D007744 4.3e-164 582.0 454 64.8
TWI23G1150 Tripterygium wilfordii HOM05D006344 ORTHO05D007744 5.6e-164 581.6 508 60.2
FAN01G1631 Fragaria x ananassa HOM05D006344 ORTHO05D007744 1.3e-163 580.5 500 61.8
AUR62023399 Chenopodium quinoa HOM05D006344 ORTHO05D007744 1.8e-162 576.6 456 62.9
Thhalv10001417m.g Eutrema salsugineum HOM05D006344 ORTHO05D007744 1.8e-162 576.6 518 58.7
SalBow8G3479 Salvia bowleyana HOM05D006344 ORTHO05D007744 4.0e-162 575.5 471 61.1
AL4G43840 Arabidopsis lyrata HOM05D006344 ORTHO05D007744 6.9e-162 574.7 464 61.9
AUR62013752 Chenopodium quinoa HOM05D006344 ORTHO05D007744 6.9e-162 574.7 498 60.0
BraA05t19467Z Brassica rapa HOM05D006344 ORTHO05D007744 1.5e-161 573.5 504 58.5
FAN03G0097 Fragaria x ananassa HOM05D006344 ORTHO05D007744 1.5e-161 573.5 552 57.4
Hund17097 Selenicereus undatus HOM05D006344 ORTHO05D007744 2.2e-160 569.7 443 62.8
C04p05760 Brassica napus HOM05D006344 ORTHO05D007744 2.9e-160 569.3 506 58.7
Sp4g26830 Schrenkiella parvula HOM05D006344 ORTHO05D007744 2.9e-160 569.3 515 57.9
SGA_v2.0_scaffold52G19234 Striga asiatica HOM05D006344 ORTHO05D007744 3.8e-160 568.9 492 59.6
EL10Ac1g00751 Beta vulgaris HOM05D006344 ORTHO05D007744 8.4e-160 567.8 493 58.2
BcaB02g08857 Brassica carinata HOM05D006344 ORTHO05D007744 4.2e-159 565.5 462 61.0
PSO782G2130 Papaver somniferum HOM05D006344 ORTHO05D007744 4.2e-159 565.5 477 61.4
Sopen10g011810 Solanum pennellii HOM05D006344 ORTHO05D007744 4.2e-159 565.5 487 60.2
ECA234G3853 Erigeron canadensis HOM05D006344 ORTHO05D007744 5.5e-159 565.1 508 58.7
HanXRQChr17g0562521 Helianthus annuus HOM05D006344 ORTHO05D007744 7.1e-159 564.7 491 60.7
AT2G44760 Arabidopsis thaliana HOM05D006344 ORTHO05D007744 3.5e-158 562.4 446 61.4
BcaC02g12272 Brassica carinata HOM05D006344 ORTHO05D007744 4.6e-158 562.0 506 58.1
BolC4t22205H Brassica oleracea HOM05D006344 ORTHO05D007744 4.6e-158 562.0 506 58.1
Sc26g0001660 Simmondsia chinensis HOM05D006344 ORTHO05D007744 4.6e-158 562.0 501 59.3
GSVIVG01018294001 Vitis vinifera HOM05D006344 ORTHO05D007744 4.6e-158 562.0 391 69.8
CARHR139980 Cardamine hirsuta HOM05D006344 ORTHO05D007744 6.0e-158 561.6 509 57.2
TAR375G1150 Trochodendron aralioides HOM05D006344 ORTHO05D007744 7.9e-158 561.2 494 60.7
Dinv44052 Davidia involucrata HOM05D006344 ORTHO05D007744 1.8e-157 560.1 386 70.2
Nitab4.5_0000228g0070 Nicotiana tabacum HOM05D006344 ORTHO05D007744 1.8e-157 560.1 509 57.6
CiPaw.14G019800 Carya illinoinensis HOM05D006344 ORTHO05D007744 5.1e-157 558.5 509 58.7
ATR0665G564 Amborella trichopoda HOM05D006344 ORTHO05D007744 2.8e-155 552.7 501 57.9
Lsat_1_v5_gn_4_39300 Lactuca sativa HOM05D006344 ORTHO05D007744 1.4e-154 550.4 490 59.4
Aa31LG1G26310 Aethionema arabicum HOM05D006344 ORTHO05D007744 1.0e-152 544.3 543 53.2
Carub.0004s2733 Capsella rubella HOM05D006344 ORTHO05D007744 6.5e-152 541.6 466 59.7
unitig_0.g1343 Utricularia gibba HOM05D006344 ORTHO05D007744 1.1e-151 540.8 459 59.0
COL.COLO4_12394 Corchorus olitorius HOM05D006344 ORTHO05D007744 3.6e-150 535.8 374 69.3
HPP92_012970 Vanilla planifolia HOM05D006344 ORTHO05D007744 1.3e-147 527.3 491 56.2
Rhsim07G0037100 Rhododendron simsii HOM05D006344 ORTHO05D007744 3.7e-147 525.8 517 55.7
Os04g0545200 Oryza sativa ssp. japonica HOM05D006344 ORTHO05D007744 6.9e-146 521.5 470 58.1
ClCG05G000130 Citrullus lanatus HOM05D006344 ORTHO05D007744 4.5e-145 518.8 499 56.7
Zm00001eb427880 Zea mays HOM05D006344 ORTHO05D007744 4.5e-145 518.8 435 59.8
Sed0012570 Sechium edule HOM05D006344 ORTHO05D007744 2.9e-144 516.2 481 57.2
PGR004G1920 Punica granatum HOM05D006344 ORTHO05D007744 4.2e-143 512.3 493 57.0
CDE06G1994 Ceratophyllum demersum HOM05D006344 ORTHO05D007744 2.7e-142 509.6 448 58.5
DCAR_025059 Daucus carota HOM05D006344 ORTHO05D007744 2.7e-142 509.6 452 56.6
CsaV3_3G007240 Cucumis sativus L. HOM05D006344 ORTHO05D007744 9.7e-140 501.1 697 43.9
COL.COLO4_10415 Corchorus olitorius HOM05D006344 ORTHO05D007744 1.7e-139 500.4 487 55.6
Actinidia18353 Actinidia chinensis HOM05D006344 ORTHO05D007744 2.4e-138 496.5 418 62.0
Cpa.g.sc22.25 Carica papaya HOM05D006344 ORTHO05D007744 6.7e-133 478.4 388 62.4
Lj9C555G1 Lonicera japonica HOM05D006344 ORTHO05D007744 3.3e-111 406.4 256 72.7
Nitab4.5_0009461g0020 Nicotiana tabacum HOM05D006344 ORTHO05D007744 2.3e-109 400.2 342 58.2
Atru.chr5.116 Acer truncatum HOM05D006344 ORTHO05D007744 5.4e-90 335.9 239 68.6
Peaxi162Scf00103g00911 Petunia axillaris HOM05D006344 ORTHO05D007744 6.4e-83 312.4 193 74.1
Peaxi162Scf00103g00912 Petunia axillaris HOM05D006344 ORTHO05D007744 9.5e-79 298.5 256 58.6
Pp3c5_3810 Physcomitrium patens HOM05D006344 ORTHO05D007744 5.4e-74 282.7 489 36.4
PGSC0003DMG400026373 Solanum tuberosum HOM05D006344 ORTHO05D007744 1.2e-73 281.6 251 57.8
Solyc10g037890.3 Solanum lycopersicum HOM05D006344 ORTHO05D007744 3.0e-72 276.9 182 72.5
SEGI_37248 Sequoiadendron giganteum HOM05D006344 ORTHO05D007744 1.6e-70 271.2 223 56.1
Solyc10g037900.1 Solanum lycopersicum HOM05D006344 ORTHO05D007744 1.1e-69 268.5 288 52.1
CAN.G768.2 Capsicum annuum HOM05D006344 ORTHO05D007744 2.0e-68 264.2 274 54.4
PGSC0003DMG400003447 Solanum tuberosum HOM05D006344 ORTHO05D007744 2.8e-62 243.8 162 71.6
AagrBONN_evm.TU.Sc2ySwM_117.1538 Anthoceros agrestis HOM05D006344 ORTHO05D007744 2.2e-59 234.2 608 28.8
Mapoly0089s0048 Marchantia polymorpha HOM05D006344 ORTHO05D007744 2.4e-58 230.7 597 30.3
SMO340G0133 Selaginella moellendorffii HOM05D002542 ORTHO05D007744 7.4e-55 219.2 452 32.1
Atru.chr5.115 Acer truncatum HOM05D006344 ORTHO05D007744 3.8e-51 206.8 258 49.6
SMO356G0573 Selaginella moellendorffii HOM05D002542 ORTHO05D005078 2.5e-39 167.5 366 31.7
Lj9A555T32 Lonicera japonica HOM05D006344 ORTHO05D007744 3.4e-36 157.1 132 62.9
SEGI_14599 Sequoiadendron giganteum HOM05D006344 ORTHO05D007744 7.9e-33 146.0 202 47.0
HanXRQChr09g0257941 Helianthus annuus HOM05D006344 ORTHO05D007744 1.1e-26 125.6 108 57.4
SEGI_30390 Sequoiadendron giganteum HOM05D006344 ORTHO05D007744 1.0e-24 119.0 88 62.5
Actinidia26517 Actinidia chinensis HOM05D006344 ORTHO05D007744 5.0e-19 100.1 61 68.9
CDE06G0422 Ceratophyllum demersum HOM05D006344 ORTHO05D007744 2.3e-16 91.3 70 57.1
CBR_g48168 Chara braunii HOM05D006344 ORTHO05D007744 1.3e-14 85.5 154 35.7
Peaxi162Scf00562g00069 Petunia axillaris HOM05D006344 ORTHO05D007744 1.7e-14 85.1 138 38.4
Peaxi162Scf00562g00611 Petunia axillaris HOM05D006344 ORTHO05D007744 4.1e-13 80.5 82 54.9
Cre16.g684900 Chlamydomonas reinhardtii HOM05D006344 ORTHO05D007744 3.8e-11 73.9 161 29.8
Aqoxy5G00964 Aquilegia oxysepala HOM05D007297 ORTHO05D009352 7.2e-10 69.7 369 23.8
COL.COLO4_10413 Corchorus olitorius HOM05D006344 ORTHO05D007744 7.2e-10 69.7 78 47.4
Potri.004G207400 Populus trichocarpa HOM05D007297 ORTHO05D009352 3.6e-09 67.4 372 24.2
BcaB08g35012 Brassica carinata HOM05D006344 ORTHO05D007744 6.8e-08 63.2 44 59.1
CBR_g48169 Chara braunii HOM05D006344 ORTHO05D007744 6.8e-08 63.2 67 44.8
Gohir.A01G011500 Gossypium hirsutum HOM05D007297 ORTHO05D009352 7.5e-07 59.7 185 26.5
Aa31LG6G16890 Aethionema arabicum HOM05D007297 ORTHO05D009352 8.3e-06 56.2 190 25.3


User provided reference genes

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