Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G32114 Trifolium pratense HOM05D005689 ORTHO05D007060 1.2e-77 293.1 144 100.0
Ca_08042_v3 Cicer arietinum L. HOM05D005689 ORTHO05D007060 3.3e-77 291.6 144 99.3
Medtr7g081040 Medicago truncatula HOM05D005689 ORTHO05D007060 4.4e-77 291.2 144 98.6
Glyma.09G245600 Glycine max HOM05D005689 ORTHO05D007060 1.7e-76 289.3 144 98.6
Glyma.18G247400 Glycine max HOM05D005689 ORTHO05D007060 3.7e-76 288.1 144 97.9
VMungo1383G2472 Vigna mungo HOM05D005689 ORTHO05D007060 3.7e-76 288.1 144 97.2
Phvul.008G049900 Phaseolus vulgaris HOM05D005689 ORTHO05D007060 4.8e-76 287.7 144 97.2
Lj1g0014054 Lotus japonicus HOM05D005689 ORTHO05D007060 1.8e-75 285.8 144 96.5
GSVIVG01024004001 Vitis vinifera HOM05D005689 ORTHO05D007060 7.0e-75 283.9 144 96.5
Eucgr.I01435 Eucalyptus grandis HOM05D005689 ORTHO05D007060 9.1e-75 283.5 144 95.1
PGR142G2796 Punica granatum HOM05D005689 ORTHO05D007060 9.1e-75 283.5 144 95.1
TWI31G0315 Tripterygium wilfordii HOM05D005689 ORTHO05D007060 2.7e-74 282.0 141 95.7
Duzib132G1056 Durio zibethinus HOM05D005689 ORTHO05D007060 3.5e-74 281.6 144 95.1
Ciclev10029529m.g Citrus clementina HOM05D005689 ORTHO05D007060 5.9e-74 280.8 144 94.4
CSS0016500 Camellia sinensis var. sinensis HOM05D005689 ORTHO05D007060 7.7e-74 280.4 144 95.1
Migut.B00070 Erythranthe guttata HOM05D005689 ORTHO05D007060 7.7e-74 280.4 144 94.4
Aqoxy6G02106 Aquilegia oxysepala HOM05D005689 ORTHO05D007060 1.0e-73 280.0 144 93.1
vmacro02282 Vaccinium macrocarpon HOM05D005689 ORTHO05D007060 1.0e-73 280.0 144 95.1
Atru.chr5.3380 Acer truncatum HOM05D005689 ORTHO05D007060 1.3e-73 279.6 144 94.4
Actinidia20518 Actinidia chinensis HOM05D005689 ORTHO05D007060 1.3e-73 279.6 144 95.1
Duzib248G0128 Durio zibethinus HOM05D005689 ORTHO05D007060 1.7e-73 279.3 144 94.4
CiPaw.05G083600 Carya illinoinensis HOM05D005689 ORTHO05D007060 2.2e-73 278.9 144 93.8
Gohir.A03G205500 Gossypium hirsutum HOM05D005689 ORTHO05D007060 2.2e-73 278.9 144 93.8
Gorai.005G254700 Gossypium raimondii HOM05D005689 ORTHO05D007060 2.2e-73 278.9 144 93.8
MSTRG.19983 Avicennia marina HOM05D005689 ORTHO05D007060 2.9e-73 278.5 144 93.8
Dinv41928 Davidia involucrata HOM05D005689 ORTHO05D007060 2.9e-73 278.5 144 94.4
QL11p051049 Quercus lobata HOM05D005689 ORTHO05D007060 2.9e-73 278.5 142 95.8
Cfa005260 Carpinus fangiana HOM05D005689 ORTHO05D007060 3.8e-73 278.1 144 94.4
Manes.04G071800 Manihot esculenta HOM05D005689 ORTHO05D007060 3.8e-73 278.1 144 93.1
Peaxi162Scf00362g00537 Petunia axillaris HOM05D005689 ORTHO05D007060 3.8e-73 278.1 144 93.8
Actinidia00628 Actinidia chinensis HOM05D005689 ORTHO05D007060 5.0e-73 277.7 144 94.4
Gohir.D02G226800 Gossypium hirsutum HOM05D005689 ORTHO05D007060 5.0e-73 277.7 144 93.1
Lsat_1_v5_gn_8_123161 Lactuca sativa HOM05D005689 ORTHO05D007060 5.0e-73 277.7 144 92.4
ClCG02G003990 Citrullus lanatus HOM05D005689 ORTHO05D007060 6.5e-73 277.3 142 93.7
MELO3C013345.2 Cucumis melo HOM05D005689 ORTHO05D007060 6.5e-73 277.3 142 93.7
CsaV3_7G001110 Cucumis sativus L. HOM05D005689 ORTHO05D007060 6.5e-73 277.3 142 93.7
MD05G1123300 Malus domestica HOM05D005689 ORTHO05D007060 6.5e-73 277.3 144 93.1
Sed0024195 Sechium edule HOM05D005689 ORTHO05D007060 6.5e-73 277.3 142 93.7
Hund06443 Selenicereus undatus HOM05D005689 ORTHO05D007060 6.5e-73 277.3 142 93.7
Lalb_Chr21g0306961 Lupinus albus HOM05D005689 ORTHO05D007060 8.5e-73 276.9 144 92.4
Nitab4.5_0003698g0100 Nicotiana tabacum HOM05D005689 ORTHO05D007060 8.5e-73 276.9 144 93.8
Potri.009G136800 Populus trichocarpa HOM05D005689 ORTHO05D007060 8.5e-73 276.9 144 94.4
RcHm_v2.0_Chr6g0278501 Rosa chinensis HOM05D005689 ORTHO05D007060 8.5e-73 276.9 144 92.4
Thecc.02G057800 Theobroma cacao HOM05D005689 ORTHO05D007060 1.1e-72 276.6 144 93.1
TWI75G0361 Tripterygium wilfordii HOM05D005689 ORTHO05D007060 1.1e-72 276.6 141 93.6
Cc09_g09830 Coffea canephora HOM05D005689 ORTHO05D007060 1.5e-72 276.2 140 94.3
FvH4_2g15500 Fragaria vesca HOM05D005689 ORTHO05D007060 1.5e-72 276.2 144 91.7
FAN15G3340 Fragaria x ananassa HOM05D005689 ORTHO05D007060 1.5e-72 276.2 144 91.7
Hma1.2p1_0032F.1_g019300 Hydrangea macrophylla HOM05D005689 ORTHO05D007060 1.5e-72 276.2 144 93.8
Prupe.8G167200 Prunus persica HOM05D005689 ORTHO05D007060 1.5e-72 276.2 144 92.4
CAN.G588.89 Capsicum annuum HOM05D005689 ORTHO05D007060 1.9e-72 275.8 144 93.1
Solyc01g111690.3 Solanum lycopersicum HOM05D005689 ORTHO05D007060 1.9e-72 275.8 144 93.1
Sopen01g053730 Solanum pennellii HOM05D005689 ORTHO05D007060 1.9e-72 275.8 144 93.1
Cpa.g.sc20.100 Carica papaya HOM05D005689 ORTHO05D007060 2.5e-72 275.4 144 93.1
EL10Ac9g21356 Beta vulgaris HOM05D005689 ORTHO05D007060 3.2e-72 275.0 144 91.7
FAN27G1498 Fragaria x ananassa HOM05D005689 ORTHO05D007060 3.2e-72 275.0 144 91.0
ECA233G5373 Erigeron canadensis HOM05D005689 ORTHO05D007060 4.2e-72 274.6 144 91.7
TAR376G1105 Trochodendron aralioides HOM05D005689 ORTHO05D007060 4.2e-72 274.6 144 92.4
CiPaw.06G120900 Carya illinoinensis HOM05D005689 ORTHO05D007060 5.5e-72 274.2 144 93.1
AUR62013016 Chenopodium quinoa HOM05D005689 ORTHO05D007060 5.5e-72 274.2 144 91.0
Sc18g0006380 Simmondsia chinensis HOM05D005689 ORTHO05D007060 5.5e-72 274.2 144 91.0
FAN20G0310 Fragaria x ananassa HOM05D005689 ORTHO05D007060 7.2e-72 273.9 144 91.0
MD10G1126300 Malus domestica HOM05D005689 ORTHO05D007060 7.2e-72 273.9 144 91.7
unitig_0.g36 Utricularia gibba HOM05D005689 ORTHO05D007060 9.4e-72 273.5 141 92.9
FAN24G0830 Fragaria x ananassa HOM05D005689 ORTHO05D007060 1.2e-71 273.1 144 91.0
HanXRQChr03g0080211 Helianthus annuus HOM05D005689 ORTHO05D007060 1.2e-71 273.1 144 91.0
PGSC0003DMG400006181 Solanum tuberosum HOM05D005689 ORTHO05D007060 1.6e-71 272.7 144 92.4
AUR62010026 Chenopodium quinoa HOM05D005689 ORTHO05D007060 2.1e-71 272.3 144 91.0
CANSAT25G1424 Cannabis sativa HOM05D005689 ORTHO05D007060 4.7e-71 271.2 144 91.0
PSO675G8512 Papaver somniferum HOM05D005689 ORTHO05D007060 2.3e-70 268.9 144 90.3
MBI12_g17551_MAGBIO Magnolia biondii HOM05D005689 ORTHO05D007060 4.0e-70 268.1 144 88.2
PSO541G0653 Papaver somniferum HOM05D005689 ORTHO05D007060 5.2e-70 267.7 144 89.6
Psat3g100360 Pisum sativum HOM05D005689 ORTHO05D007060 5.2e-70 267.7 130 98.5
DCAR_030423 Daucus carota HOM05D005689 ORTHO05D007060 3.4e-69 265.0 142 89.4
DCAR_003179 Daucus carota HOM05D005689 ORTHO05D007060 9.8e-69 263.5 141 88.7
Os09g0541500 Oryza sativa ssp. japonica HOM05D005689 ORTHO05D007060 9.8e-69 263.5 144 86.1
Nitab4.5_0000283g0450 Nicotiana tabacum HOM05D005689 ORTHO05D007060 2.2e-68 262.3 154 86.4
SalBow5G2226 Salvia bowleyana HOM05D005689 ORTHO05D007060 2.8e-68 261.9 167 78.4
Zm00001eb331790 Zea mays HOM05D005689 ORTHO05D007060 2.8e-68 261.9 138 89.1
SalBow1G8746 Salvia bowleyana HOM05D005689 ORTHO05D007060 3.7e-68 261.5 143 88.1
Oeu019918.2 Olea europaea HOM05D005689 ORTHO05D007060 1.1e-67 260.0 170 77.1
CDE02G0259 Ceratophyllum demersum HOM05D005689 ORTHO05D007060 1.4e-67 259.6 142 86.6
arahy.Tifrunner.gnm1.ann1.9U6RFS Arachis hypogaea HOM05D005689 ORTHO05D007060 1.2e-66 256.5 205 67.3
Thhalv10026520m.g Eutrema salsugineum HOM05D005689 ORTHO05D007060 1.6e-66 256.1 140 86.4
THA.LOC104824758 Tarenaya hassleriana HOM05D005689 ORTHO05D007060 2.7e-66 255.4 137 89.1
AL4G10060 Arabidopsis lyrata HOM05D005689 ORTHO05D007060 3.5e-66 255.0 140 86.4
Sp4g00120 Schrenkiella parvula HOM05D005689 ORTHO05D007060 5.9e-66 254.2 140 85.0
AT2G20930 Arabidopsis thaliana HOM05D005689 ORTHO05D007060 7.7e-66 253.8 140 85.7
BcaB08g34950 Brassica carinata HOM05D005689 ORTHO05D007060 7.7e-66 253.8 140 85.0
BcaC07g41181 Brassica carinata HOM05D005689 ORTHO05D007060 7.7e-66 253.8 140 85.0
BcaNung01978 Brassica carinata HOM05D005689 ORTHO05D007060 7.7e-66 253.8 140 85.0
Aa31LG6G16620 Aethionema arabicum HOM05D005689 ORTHO05D007060 1.3e-65 253.1 140 84.3
Carub.0004s0002 Capsella rubella HOM05D005689 ORTHO05D007060 1.7e-65 252.7 140 85.0
A06p48990 Brassica napus HOM05D005689 ORTHO05D007060 5.0e-65 251.1 140 84.3
BraA06t27765Z Brassica rapa HOM05D005689 ORTHO05D007060 5.0e-65 251.1 140 84.3
CARHR174210 Cardamine hirsuta HOM05D005689 ORTHO05D007060 5.0e-65 251.1 140 85.0
HPP92_012947 Vanilla planifolia HOM05D005689 ORTHO05D007060 1.5e-64 249.6 138 84.1
C07p63680 Brassica napus HOM05D005689 ORTHO05D007060 1.9e-64 249.2 140 82.9
BolC7t46781H Brassica oleracea HOM05D005689 ORTHO05D007060 1.9e-64 249.2 140 82.9
SEGI_29883 Sequoiadendron giganteum HOM05D005689 ORTHO05D007060 1.9e-64 249.2 142 83.1
Sabra09G0106300 Salix brachista HOM05D005689 ORTHO05D007060 9.5e-64 246.9 208 64.9
Thhalv10000369m.g Eutrema salsugineum HOM05D005689 ORTHO05D007060 1.2e-63 246.5 140 83.6
Sp7g37220 Schrenkiella parvula HOM05D005689 ORTHO05D007060 2.8e-63 245.4 140 84.3
A09p58620 Brassica napus HOM05D005689 ORTHO05D007060 1.4e-62 243.0 140 82.9
C08p41910 Brassica napus HOM05D005689 ORTHO05D007060 1.4e-62 243.0 140 82.9
BolC8t51754H Brassica oleracea HOM05D005689 ORTHO05D007060 1.4e-62 243.0 140 82.9
BraA09t41249Z Brassica rapa HOM05D005689 ORTHO05D007060 1.4e-62 243.0 140 82.9
SalBow5G0288 Salvia bowleyana HOM05D005689 ORTHO05D007060 4.0e-62 241.5 156 77.6
Aa31LG7G15690 Aethionema arabicum HOM05D005689 ORTHO05D007060 1.5e-61 239.6 168 71.4
Mapoly0010s0009 Marchantia polymorpha HOM05D005689 ORTHO05D007060 2.6e-61 238.8 138 80.4
Sed0010745 Sechium edule HOM05D005689 ORTHO05D007060 1.3e-60 236.5 142 82.4
Pp3c13_19460 Physcomitrium patens HOM05D005689 ORTHO05D007060 7.0e-59 230.7 144 72.9
ATR0315G041 Amborella trichopoda HOM05D005689 ORTHO05D007060 9.2e-59 230.3 129 84.5
BcaC07g41184 Brassica carinata HOM05D005689 ORTHO05D007060 8.6e-57 223.8 140 77.1
Pp3c12_10830 Physcomitrium patens HOM05D005689 ORTHO05D007060 6.8e-54 214.2 144 68.1
SMO228G0084 Selaginella moellendorffii HOM05D005689 ORTHO05D007060 5.4e-51 204.5 138 65.2
HPP92_007243 Vanilla planifolia HOM05D005689 ORTHO05D007060 2.7e-50 202.2 119 79.8
SGA_v2.0_scaffold80G25838 Striga asiatica HOM05D005689 ORTHO05D007060 4.6e-50 201.4 160 65.0
arahy.Tifrunner.gnm1.ann1.B1HGXN Arachis hypogaea HOM05D005689 ORTHO05D007060 7.8e-50 200.7 99 97.0
CARHR111830 Cardamine hirsuta HOM05D005689 ORTHO05D007060 1.0e-49 200.3 114 82.5
CBR_g33926 Chara braunii HOM05D000604 ORTHO05D004856 3.9e-49 198.4 139 63.3
Nitab4.5_0000079g0270 Nicotiana tabacum HOM05D005689 ORTHO05D007060 3.3e-48 195.3 120 81.7
Nn6g31939 Nelumbo nucifera HOM05D005689 ORTHO05D007060 6.8e-46 187.6 97 89.7
Potri.004G176500 Populus trichocarpa HOM05D005689 ORTHO05D007060 1.3e-44 183.3 120 77.5
Rhsim11G0192800 Rhododendron simsii HOM05D005689 ORTHO05D007060 9.5e-32 140.6 74 94.6
AUR62017814 Chenopodium quinoa HOM05D005689 ORTHO05D007060 2.9e-28 129.0 74 85.1
Cre03.g165650 Chlamydomonas reinhardtii HOM05D005689 ORTHO05D007060 4.9e-28 128.3 145 46.9
Oeu028973.1 Olea europaea HOM05D005689 ORTHO05D007060 1.4e-27 126.7 74 82.4
AUR62003497 Chenopodium quinoa HOM05D005689 ORTHO05D007060 2.4e-27 125.9 74 82.4
RcHm_v2.0_Chr4g0392001 Rosa chinensis HOM05D005689 ORTHO05D007060 3.2e-27 125.6 140 51.4
Ah.01g023120 Amaranthus hybridus HOM05D005689 ORTHO05D007060 3.9e-17 92.0 43 95.3
Cfa022471 Carpinus fangiana HOM05D000441 ORTHO05D124224 4.5e-13 78.6 161 33.5
PRCOL_00005825 Prasinoderma coloniale HOM05D005689 ORTHO05D007060 2.2e-12 76.3 117 37.6
MCO02G011 Micromonas commoda HOM05D005689 ORTHO05D007060 3.8e-12 75.5 157 31.2
SGA_v2.0_scaffold199G41205 Striga asiatica HOM05D005689 ORTHO05D007060 4.2e-11 72.0 49 67.3
HanXRQChr05g0150591 Helianthus annuus HOM05D005689 ORTHO05D007060 7.1e-11 71.2 44 77.3
Cre13.g571600 Chlamydomonas reinhardtii HOM05D004554 ORTHO05D005360 1.3e-07 60.5 132 28.8
SGA_v2.0_scaffold11G05770 Striga asiatica HOM05D005689 ORTHO05D004382 1.6e-07 60.1 36 69.4
C03p66780 Brassica napus HOM05D046457 ORTHO05D032727 4.0e-06 55.5 83 38.6


User provided reference genes

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