Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G32088 Trifolium pratense HOM05D000655 ORTHO05D001635 1.3e-41 172.6 84 100.0
TPR.G20747 Trifolium pratense HOM05D000236 ORTHO05D000192 4.6e-18 94.4 50 88.0
TPR.G7231 Trifolium pratense HOM05D000655 ORTHO05D001635 3.0e-17 91.7 47 91.5
TPR.G28842 Trifolium pratense HOM05D000655 ORTHO05D001635 1.9e-16 89.0 52 80.8
Phvul.L001744 Phaseolus vulgaris HOM05D000655 ORTHO05D001635 1.6e-15 85.9 52 75.0
Ca_09802_v3 Cicer arietinum L. HOM05D000655 ORTHO05D001635 6.2e-15 84.0 52 73.1
Glyma.10G190500 Glycine max HOM05D000655 ORTHO05D001635 8.1e-15 83.6 46 80.4
Psat6g131440 Pisum sativum HOM05D000655 ORTHO05D001635 8.1e-15 83.6 52 71.2
Glyma.20G200200 Glycine max HOM05D000655 ORTHO05D001635 1.1e-14 83.2 49 75.5
Lj5g0002147 Lotus japonicus HOM05D000655 ORTHO05D001635 1.8e-14 82.4 52 73.1
Glyma.10G133900 Glycine max HOM05D000655 ORTHO05D001635 3.1e-14 81.6 52 71.2
Glyma.20G083000 Glycine max HOM05D000655 ORTHO05D001635 3.1e-14 81.6 52 71.2
VMungo0720G1178 Vigna mungo HOM05D000655 ORTHO05D001635 3.1e-14 81.6 52 71.2
VMungo0720G2726 Vigna mungo HOM05D000655 ORTHO05D001635 3.1e-14 81.6 52 71.2
Manes.03G159200 Manihot esculenta HOM05D000655 ORTHO05D001635 4.0e-14 81.3 52 73.1
AT1G04520 Arabidopsis thaliana HOM05D000655 ORTHO05D001635 8.9e-14 80.1 52 71.2
Medtr1g073320 Medicago truncatula HOM05D000655 ORTHO05D001635 1.2e-13 79.7 52 69.2
COL.COLO4_15961 Corchorus olitorius HOM05D000655 ORTHO05D001635 1.5e-13 79.3 52 69.2
Phvul.007G231300 Phaseolus vulgaris HOM05D000655 ORTHO05D001635 1.5e-13 79.3 52 69.2
Manes.15G045600 Manihot esculenta HOM05D000655 ORTHO05D001635 2.0e-13 79.0 52 69.2
MD16G1226300 Malus domestica HOM05D000655 ORTHO05D001635 2.6e-13 78.6 52 69.2
Prupe.1G048300 Prunus persica HOM05D000655 ORTHO05D001635 3.4e-13 78.2 52 69.2
CANSAT78G0277 Cannabis sativa HOM05D000655 ORTHO05D001635 4.4e-13 77.8 49 69.4
Duzib151G0844 Durio zibethinus HOM05D000655 ORTHO05D001635 4.4e-13 77.8 54 64.8
Duzib212G0872 Durio zibethinus HOM05D000655 ORTHO05D001635 5.8e-13 77.4 52 67.3
ClCG05G004010 Citrullus lanatus HOM05D000655 ORTHO05D001635 7.6e-13 77.0 52 67.3
MELO3C006379.2 Cucumis melo HOM05D000655 ORTHO05D001635 7.6e-13 77.0 52 67.3
CsaV3_3G011720 Cucumis sativus L. HOM05D000655 ORTHO05D001635 7.6e-13 77.0 52 67.3
Lalb_Chr02g0150701 Lupinus albus HOM05D000655 ORTHO05D001635 7.6e-13 77.0 52 67.3
Sed0011633 Sechium edule HOM05D000655 ORTHO05D001635 7.6e-13 77.0 52 67.3
Sed0011206 Sechium edule HOM05D000655 ORTHO05D001635 9.9e-13 76.6 52 67.3
MD13G1221600 Malus domestica HOM05D000655 ORTHO05D001635 1.3e-12 76.3 52 71.2
QL06p020977 Quercus lobata HOM05D000655 ORTHO05D001635 1.3e-12 76.3 52 65.4
Sed0017841 Sechium edule HOM05D000655 ORTHO05D001635 1.3e-12 76.3 49 71.4
Thecc.04G263600 Theobroma cacao HOM05D000655 ORTHO05D001635 1.3e-12 76.3 52 65.4
CsaV3_2G012430 Cucumis sativus L. HOM05D000655 ORTHO05D001635 2.2e-12 75.5 57 63.2
Gorai.011G178200 Gossypium raimondii HOM05D000655 ORTHO05D001635 2.2e-12 75.5 52 65.4
Lalb_Chr21g0312511 Lupinus albus HOM05D000655 ORTHO05D001635 2.2e-12 75.5 49 69.4
Gohir.A10G107900 Gossypium hirsutum HOM05D000655 ORTHO05D001635 2.9e-12 75.1 52 63.5
Carub.0004s1495 Capsella rubella HOM05D000655 ORTHO05D001635 3.8e-12 74.7 52 67.3
Potri.010G065800 Populus trichocarpa HOM05D000655 ORTHO05D001635 3.8e-12 74.7 52 63.5
Duzib052G1064 Durio zibethinus HOM05D000655 ORTHO05D001635 6.4e-12 73.9 52 63.5
Ciclev10005547m.g Citrus clementina HOM05D000655 ORTHO05D001635 8.4e-12 73.6 52 65.4
Gohir.D10G158566 Gossypium hirsutum HOM05D000655 ORTHO05D001635 8.4e-12 73.6 52 63.5
Sabra10G0041400 Salix brachista HOM05D000655 ORTHO05D001635 1.4e-11 72.8 52 61.5
DCAR_024292 Daucus carota HOM05D000655 ORTHO05D001635 4.1e-11 71.2 52 59.6
Atru.chr4.1918 Acer truncatum HOM05D000655 ORTHO05D001635 7.1e-11 70.5 52 59.6
arahy.Tifrunner.gnm1.ann1.05JFC4 Arachis hypogaea HOM05D000655 ORTHO05D001635 7.1e-11 70.5 52 63.5
arahy.Tifrunner.gnm1.ann1.MKT5JH Arachis hypogaea HOM05D000655 ORTHO05D001635 7.1e-11 70.5 52 63.5
CiPaw.02G107200 Carya illinoinensis HOM05D000655 ORTHO05D001635 7.1e-11 70.5 52 61.5
Sc13g0006210 Simmondsia chinensis HOM05D000655 ORTHO05D001635 9.2e-11 70.1 52 59.6
arahy.Tifrunner.gnm1.ann1.3SR464 Arachis hypogaea HOM05D000655 ORTHO05D001635 1.2e-10 69.7 52 61.5
TAR365G0828 Trochodendron aralioides HOM05D000655 ORTHO05D001635 1.2e-10 69.7 52 61.5
GSVIVG01027913001 Vitis vinifera HOM05D000655 ORTHO05D001635 1.2e-10 69.7 52 59.6
CARHR127330 Cardamine hirsuta HOM05D000655 ORTHO05D001635 2.7e-10 68.6 52 63.5
DCAR_027348 Daucus carota HOM05D000655 ORTHO05D001635 4.6e-10 67.8 52 57.7
Aa31LG5G3980 Aethionema arabicum HOM05D000655 ORTHO05D001635 6.0e-10 67.4 38 78.9
arahy.Tifrunner.gnm1.ann1.T5QG8Q Arachis hypogaea HOM05D000655 ORTHO05D001635 6.0e-10 67.4 52 59.6
Eucgr.H00130 Eucalyptus grandis HOM05D000655 ORTHO05D001635 7.8e-10 67.0 52 61.5
Solyc03g005690.3 Solanum lycopersicum HOM05D000655 ORTHO05D001635 7.8e-10 67.0 52 59.6
Sopen03g001700 Solanum pennellii HOM05D000655 ORTHO05D001635 7.8e-10 67.0 52 59.6
PSO017G6045 Papaver somniferum HOM05D000655 ORTHO05D001635 1.7e-09 65.9 49 55.1
Hund11938 Selenicereus undatus HOM05D000655 ORTHO05D001635 2.3e-09 65.5 51 54.9
Dinv27111 Davidia involucrata HOM05D000655 ORTHO05D001635 3.0e-09 65.1 52 57.7
Gorai.006G251100 Gossypium raimondii HOM05D000655 ORTHO05D001635 3.9e-09 64.7 53 58.5
PGSC0003DMG400013408 Solanum tuberosum HOM05D000655 ORTHO05D001635 3.9e-09 64.7 53 56.6
TAR636G2355 Trochodendron aralioides HOM05D000655 ORTHO05D001635 5.1e-09 64.3 52 55.8
CAN.G638.42 Capsicum annuum HOM05D000655 ORTHO05D001635 6.6e-09 63.9 52 55.8
Cc03_g06270 Coffea canephora HOM05D000655 ORTHO05D001635 6.6e-09 63.9 52 57.7
PSO063G4308 Papaver somniferum HOM05D000655 ORTHO05D001635 8.7e-09 63.5 49 53.1
Actinidia39929 Actinidia chinensis HOM05D000655 ORTHO05D001635 1.1e-08 63.2 52 53.8
AL4G28980 Arabidopsis lyrata HOM05D000655 ORTHO05D001635 1.5e-08 62.8 36 75.0
AT2G33330 Arabidopsis thaliana HOM05D000655 ORTHO05D001635 1.5e-08 62.8 36 75.0
Cpa.g.sc44.2 Carica papaya HOM05D000655 ORTHO05D001635 1.5e-08 62.8 52 59.6
TAR362G0049 Trochodendron aralioides HOM05D000655 ORTHO05D001635 1.5e-08 62.8 46 58.7
Gohir.D09G228400 Gossypium hirsutum HOM05D000655 ORTHO05D001635 1.9e-08 62.4 53 56.6
Sc19g0003350 Simmondsia chinensis HOM05D000655 ORTHO05D001635 1.9e-08 62.4 52 51.9
Peaxi162Scf00153g01843 Petunia axillaris HOM05D000655 ORTHO05D001635 3.3e-08 61.6 52 53.8
Actinidia11372 Actinidia chinensis HOM05D000655 ORTHO05D001635 5.6e-08 60.8 52 51.9
Lsat_1_v5_gn_6_66060 Lactuca sativa HOM05D000655 ORTHO05D001635 5.6e-08 60.8 53 54.7
Nitab4.5_0000194g0250 Nicotiana tabacum HOM05D000655 ORTHO05D001635 7.3e-08 60.5 53 56.6
Nitab4.5_0002751g0040 Nicotiana tabacum HOM05D000655 ORTHO05D001635 7.3e-08 60.5 53 56.6
Psat6g107400 Pisum sativum HOM05D000655 ORTHO05D001635 7.3e-08 60.5 38 73.7
Aqoxy2G03745 Aquilegia oxysepala HOM05D000655 ORTHO05D001635 1.2e-07 59.7 54 55.6
BcaC02g11418 Brassica carinata HOM05D000655 ORTHO05D001635 1.2e-07 59.7 34 79.4
A05p12190 Brassica napus HOM05D000655 ORTHO05D001635 1.2e-07 59.7 34 79.4
C04p15760 Brassica napus HOM05D000655 ORTHO05D001635 1.2e-07 59.7 34 79.4
BolC4t23146H Brassica oleracea HOM05D000655 ORTHO05D001635 1.2e-07 59.7 34 79.4
BraA05t20163Z Brassica rapa HOM05D000655 ORTHO05D001635 1.2e-07 59.7 34 79.4
Oeu037693.1 Olea europaea HOM05D000655 ORTHO05D001635 1.2e-07 59.7 52 50.0
Ah.04g155200 Amaranthus hybridus HOM05D000655 ORTHO05D001635 1.6e-07 59.3 58 44.8
Thhalv10017042m.g Eutrema salsugineum HOM05D000655 ORTHO05D001635 1.6e-07 59.3 42 73.8
Sp4g15640 Schrenkiella parvula HOM05D000655 ORTHO05D001635 1.6e-07 59.3 34 79.4
Haze_11456 Corylus avellana HOM05D000655 ORTHO05D001635 2.1e-07 58.9 52 57.7
Gohir.A09G227400 Gossypium hirsutum HOM05D000655 ORTHO05D001635 2.1e-07 58.9 56 51.8
CAN.G220.70 Capsicum annuum HOM05D000655 ORTHO05D001635 2.8e-07 58.5 54 53.7
PGSC0003DMG400017195 Solanum tuberosum HOM05D000655 ORTHO05D001635 2.8e-07 58.5 53 52.8
A10p02940 Brassica napus HOM05D000655 ORTHO05D001635 3.6e-07 58.2 32 81.2
C05p02690 Brassica napus HOM05D000655 ORTHO05D001635 3.6e-07 58.2 32 81.2
BolC5t29050H Brassica oleracea HOM05D000655 ORTHO05D001635 3.6e-07 58.2 32 81.2
BraA10t42563Z Brassica rapa HOM05D000655 ORTHO05D001635 3.6e-07 58.2 32 81.2
AUR62016167 Chenopodium quinoa HOM05D000655 ORTHO05D001635 3.6e-07 58.2 54 50.0
MELO3C012843.2 Cucumis melo HOM05D000655 ORTHO05D001635 3.6e-07 58.2 53 56.6
FvH4_4g04620 Fragaria vesca HOM05D000655 ORTHO05D001635 3.6e-07 58.2 32 81.2
FAN12G3666 Fragaria x ananassa HOM05D000655 ORTHO05D001635 3.6e-07 58.2 32 81.2
FAN17G1294 Fragaria x ananassa HOM05D000655 ORTHO05D001635 3.6e-07 58.2 32 81.2
FAN22G1664 Fragaria x ananassa HOM05D000655 ORTHO05D001635 3.6e-07 58.2 32 81.2
RcHm_v2.0_Chr4g0395391 Rosa chinensis HOM05D000655 ORTHO05D001635 3.6e-07 58.2 32 81.2
Sp1g03350 Schrenkiella parvula HOM05D000655 ORTHO05D001635 3.6e-07 58.2 32 81.2
EL10Ac3g04945 Beta vulgaris HOM05D000655 ORTHO05D001635 4.7e-07 57.8 52 46.2
CSS0032886 Camellia sinensis var. sinensis HOM05D000655 ORTHO05D001635 4.7e-07 57.8 61 49.2
CsaV3_3G028350 Cucumis sativus L. HOM05D000655 ORTHO05D001635 4.7e-07 57.8 53 54.7
Solyc09g090680.3 Solanum lycopersicum HOM05D000655 ORTHO05D001635 4.7e-07 57.8 53 52.8
Sopen09g033620 Solanum pennellii HOM05D000655 ORTHO05D001635 4.7e-07 57.8 53 52.8
PGR031G0393 Punica granatum HOM05D000655 ORTHO05D001635 6.2e-07 57.4 38 73.7
HPP92_005113 Vanilla planifolia HOM05D000655 ORTHO05D001635 6.2e-07 57.4 52 51.9
ClCG07G001380 Citrullus lanatus HOM05D000655 ORTHO05D001635 8.1e-07 57.0 44 56.8
TAR633G0807 Trochodendron aralioides HOM05D000655 ORTHO05D001635 8.1e-07 57.0 54 48.1
Lsat_1_v5_gn_2_41401 Lactuca sativa HOM05D000655 ORTHO05D001635 1.1e-06 56.6 53 49.1
PSO384G2659 Papaver somniferum HOM05D000655 ORTHO05D001635 1.1e-06 56.6 61 44.3
ClCG06G007270 Citrullus lanatus HOM05D000655 ORTHO05D001635 1.4e-06 56.2 40 67.5
MELO3C023043.2 Cucumis melo HOM05D000655 ORTHO05D001635 1.4e-06 56.2 40 67.5
Thhalv10008311m.g Eutrema salsugineum HOM05D000655 ORTHO05D001635 1.4e-06 56.2 30 83.3
CARHR003860 Cardamine hirsuta HOM05D000655 ORTHO05D001635 1.8e-06 55.8 30 80.0
AUR62035083 Chenopodium quinoa HOM05D000655 ORTHO05D001635 1.8e-06 55.8 54 48.1
ECA236G4140 Erigeron canadensis HOM05D000655 ORTHO05D001635 1.8e-06 55.8 53 47.2
Migut.G00549 Erythranthe guttata HOM05D000655 ORTHO05D001635 1.8e-06 55.8 54 55.6
PSO135G0843 Papaver somniferum HOM05D000655 ORTHO05D001635 2.4e-06 55.5 61 42.6
THA.LOC104801065 Tarenaya hassleriana HOM05D000655 ORTHO05D001635 2.4e-06 55.5 34 73.5
Aa31LG1G20350 Aethionema arabicum HOM05D000655 ORTHO05D001635 4.0e-06 54.7 29 82.8
AL1G14170 Arabidopsis lyrata HOM05D000655 ORTHO05D001635 4.0e-06 54.7 29 82.8
Carub.0001s0373 Capsella rubella HOM05D000655 ORTHO05D001635 4.0e-06 54.7 29 82.8
Rhsim02G0043600 Rhododendron simsii HOM05D000655 ORTHO05D001635 4.0e-06 54.7 53 52.8
Peaxi162Scf00319g00067 Petunia axillaris HOM05D000655 ORTHO05D001635 6.9e-06 53.9 53 49.1
Potri.008G171700 Populus trichocarpa HOM05D000655 ORTHO05D001635 6.9e-06 53.9 29 82.8
EL10Ac5g12442 Beta vulgaris HOM05D004537 ORTHO05D005492 9.0e-06 53.5 29 75.9
Nn1g02955 Nelumbo nucifera HOM05D000655 ORTHO05D001635 9.0e-06 53.5 60 46.7


User provided reference genes

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