Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G32060 Trifolium pratense HOM05D000071 ORTHO05D003524 2.6e-96 355.5 196 100.0
TPR.G24557 Trifolium pratense HOM05D000071 ORTHO05D000029 8.4e-23 111.3 151 51.0
Medtr8g089000 Medicago truncatula HOM05D000071 ORTHO05D000029 2.3e-20 103.2 211 43.6
TPR.G6230 Trifolium pratense HOM05D000071 ORTHO05D000029 3.7e-18 95.9 227 39.2
TPR.G6238 Trifolium pratense HOM05D000071 ORTHO05D000029 3.4e-16 89.4 227 41.4
Medtr8g088970 Medicago truncatula HOM05D000071 ORTHO05D000029 5.0e-15 85.5 230 38.7
Medtr4g018970 Medicago truncatula HOM05D000071 ORTHO05D000029 7.9e-13 78.2 230 37.8
TPR.G6237 Trifolium pratense HOM05D000071 ORTHO05D000029 2.5e-11 73.2 67 56.7
TPR.G6258 Trifolium pratense HOM05D000071 ORTHO05D000029 2.2e-10 70.1 67 53.7
Medtr6g051800 Medicago truncatula HOM05D000071 ORTHO05D000029 9.1e-09 64.7 97 40.2
GSVIVG01028817001 Vitis vinifera HOM05D000071 ORTHO05D000029 9.1e-09 64.7 136 33.1
CiPaw.03G036100 Carya illinoinensis HOM05D000033 ORTHO05D004097 2.6e-08 63.2 106 34.9
Glyma.16G171200 Glycine max HOM05D000071 ORTHO05D000029 3.4e-08 62.8 129 32.6
Gohir.A11G251600 Gossypium hirsutum HOM05D000071 ORTHO05D000029 4.5e-08 62.4 130 36.2
Phvul.004G096400 Phaseolus vulgaris HOM05D000071 ORTHO05D000029 5.9e-08 62.0 101 34.7
Glyma.16G125200 Glycine max HOM05D000071 ORTHO05D000029 7.7e-08 61.6 129 31.8
PSO675G9213 Papaver somniferum HOM05D000071 ORTHO05D003524 7.7e-08 61.6 122 36.9
Glyma.16G106200 Glycine max HOM05D000071 ORTHO05D000029 1.0e-07 61.2 137 31.4
Glyma.16G126100 Glycine max HOM05D000071 ORTHO05D000029 1.0e-07 61.2 129 31.0
HanXRQChr15g0471911 Helianthus annuus HOM05D000033 ORTHO05D001614 1.0e-07 61.2 143 36.4
Dinv24273 Davidia involucrata HOM05D000071 ORTHO05D000029 1.7e-07 60.5 135 31.9
Hund02830 Selenicereus undatus HOM05D000053 ORTHO05D000035 1.7e-07 60.5 154 33.1
QL08p013118 Quercus lobata HOM05D000071 ORTHO05D000029 2.2e-07 60.1 97 37.1
Duzib177G0287 Durio zibethinus HOM05D000071 ORTHO05D000029 2.9e-07 59.7 111 35.1
Ah.06g189790 Amaranthus hybridus HOM05D000053 ORTHO05D000035 3.8e-07 59.3 97 39.2
A04p20070 Brassica napus HOM05D000053 ORTHO05D000035 3.8e-07 59.3 109 36.7
Lj2g0014060 Lotus japonicus HOM05D000053 ORTHO05D000448 5.0e-07 58.9 119 35.3
QL07p034964 Quercus lobata HOM05D000053 ORTHO05D000448 5.0e-07 58.9 106 35.8
C04p55750 Brassica napus HOM05D000053 ORTHO05D000035 6.5e-07 58.5 109 35.8
BolC4t27101H Brassica oleracea HOM05D000053 ORTHO05D000035 6.5e-07 58.5 109 35.8
CANSAT21G1527 Cannabis sativa HOM05D000071 ORTHO05D000029 6.5e-07 58.5 110 34.5
DCAR_026030 Daucus carota HOM05D000094 ORTHO05D003883 6.5e-07 58.5 95 41.1
Eucgr.K00624 Eucalyptus grandis HOM05D000053 ORTHO05D000035 6.5e-07 58.5 119 38.7
Eucgr.K00638 Eucalyptus grandis HOM05D000053 ORTHO05D000035 6.5e-07 58.5 119 37.8
Medtr4g017710 Medicago truncatula HOM05D000053 ORTHO05D000448 6.5e-07 58.5 107 38.3
PSO339G2320 Papaver somniferum HOM05D000071 ORTHO05D003524 6.5e-07 58.5 95 42.1
BraA04t17589Z Brassica rapa HOM05D000053 ORTHO05D000035 8.5e-07 58.2 109 35.8
CSS0044448 Camellia sinensis var. sinensis HOM05D000071 ORTHO05D000029 8.5e-07 58.2 98 40.8
Gorai.005G029200 Gossypium raimondii HOM05D000053 ORTHO05D000448 8.5e-07 58.2 83 39.8
Duzib177G0640 Durio zibethinus HOM05D000071 ORTHO05D000029 1.1e-06 57.8 111 34.2
Duzib177G0924 Durio zibethinus HOM05D000071 ORTHO05D000029 1.1e-06 57.8 111 34.2
PSO151G0118 Papaver somniferum HOM05D000071 ORTHO05D003524 1.1e-06 57.8 81 43.2
Peaxi162Scf01350g00012 Petunia axillaris HOM05D000071 ORTHO05D000029 1.1e-06 57.8 98 37.8
GSVIVG01012274001 Vitis vinifera HOM05D000053 ORTHO05D000035 1.1e-06 57.8 129 34.1
AUR62020003 Chenopodium quinoa HOM05D000311 ORTHO05D000183 1.4e-06 57.4 98 37.8
Dinv07783 Davidia involucrata HOM05D000071 ORTHO05D000029 1.4e-06 57.4 82 39.0
Dinv24277 Davidia involucrata HOM05D000071 ORTHO05D000029 1.4e-06 57.4 72 50.0
Duzib150G0385 Durio zibethinus HOM05D000311 ORTHO05D000183 1.4e-06 57.4 76 43.4
Duzib177G0555 Durio zibethinus HOM05D000071 ORTHO05D000029 1.4e-06 57.4 102 34.3
Duzib177G0768 Durio zibethinus HOM05D000071 ORTHO05D000029 1.4e-06 57.4 102 34.3
PSO423G0192 Papaver somniferum HOM05D000071 ORTHO05D003524 1.4e-06 57.4 95 41.1
Prupe.1G067000 Prunus persica HOM05D000071 ORTHO05D000029 1.4e-06 57.4 77 50.6
Rhsim09G0138900 Rhododendron simsii HOM05D000071 ORTHO05D000029 1.4e-06 57.4 118 33.9
Actinidia29086 Actinidia chinensis HOM05D000053 ORTHO05D000448 1.9e-06 57.0 97 37.1
Ciclev10014016m.g Citrus clementina HOM05D000053 ORTHO05D000035 1.9e-06 57.0 101 34.7
Ciclev10017771m.g Citrus clementina HOM05D000053 ORTHO05D000035 1.9e-06 57.0 101 34.7
Cc07_g16440 Coffea canephora HOM05D000071 ORTHO05D000029 1.9e-06 57.0 119 34.5
FAN21G1122 Fragaria x ananassa HOM05D000021 ORTHO05D000010 1.9e-06 57.0 101 37.6
Glyma.16G176900 Glycine max HOM05D000071 ORTHO05D000029 1.9e-06 57.0 123 35.8
Solyc07g054120.2 Solanum lycopersicum HOM05D000071 ORTHO05D000029 1.9e-06 57.0 131 32.1
TWI09G1124 Tripterygium wilfordii HOM05D000021 ORTHO05D000010 1.9e-06 57.0 104 38.5
BolC8t52591H Brassica oleracea HOM05D000311 ORTHO05D000183 2.5e-06 56.6 107 35.5
Haze_21034 Corylus avellana HOM05D000053 ORTHO05D000448 2.5e-06 56.6 107 36.4
PSO151G0028 Papaver somniferum HOM05D000071 ORTHO05D003524 2.5e-06 56.6 97 40.2
arahy.Tifrunner.gnm1.ann1.N7FSUU Arachis hypogaea HOM05D000033 ORTHO05D001614 3.2e-06 56.2 97 38.1
arahy.Tifrunner.gnm1.ann1.WWX9VA Arachis hypogaea HOM05D000033 ORTHO05D001614 3.2e-06 56.2 97 38.1
PSO423G0131 Papaver somniferum HOM05D000071 ORTHO05D003524 3.2e-06 56.2 95 41.1
BcaC09g50127 Brassica carinata HOM05D000053 ORTHO05D000035 4.2e-06 55.8 102 38.2
CDE08G0759 Ceratophyllum demersum HOM05D002649 ORTHO05D002838 4.2e-06 55.8 110 36.4
Dinv24272 Davidia involucrata HOM05D000071 ORTHO05D000029 4.2e-06 55.8 43 58.1
Migut.N00428 Erythranthe guttata HOM05D000517 ORTHO05D000751 4.2e-06 55.8 114 34.2
Thhalv10023329m.g Eutrema salsugineum HOM05D000311 ORTHO05D000183 4.2e-06 55.8 108 35.2
Glyma.06G145500 Glycine max HOM05D000033 ORTHO05D001614 4.2e-06 55.8 109 35.8
Glyma.16G184700 Glycine max HOM05D000071 ORTHO05D000029 4.2e-06 55.8 101 37.6
Gohir.D11G308000 Gossypium hirsutum HOM05D000071 ORTHO05D000029 4.2e-06 55.8 102 34.3
Nitab4.5_0002577g0100 Nicotiana tabacum HOM05D000071 ORTHO05D000029 4.2e-06 55.8 100 35.0
Thecc.05G274900 Theobroma cacao HOM05D000071 ORTHO05D000029 4.2e-06 55.8 111 39.6
CiPaw.05G209300 Carya illinoinensis HOM05D000071 ORTHO05D000029 5.5e-06 55.5 88 40.9
Ciclev10029818m.g Citrus clementina HOM05D000053 ORTHO05D000035 5.5e-06 55.5 122 35.2
Haze_24812 Corylus avellana HOM05D000071 ORTHO05D000029 5.5e-06 55.5 98 39.8
Eucgr.L01680 Eucalyptus grandis HOM05D000071 ORTHO05D000029 5.5e-06 55.5 106 35.8
Gorai.007G338700 Gossypium raimondii HOM05D000071 ORTHO05D000029 5.5e-06 55.5 102 33.3
Hma1.2p1_0017F.1_g011350 Hydrangea macrophylla HOM05D000311 ORTHO05D000183 5.5e-06 55.5 95 36.8
Peaxi162Scf01269g00016 Petunia axillaris HOM05D000053 ORTHO05D000035 5.5e-06 55.5 99 38.4
Sabra10G0026800 Salix brachista HOM05D003705 ORTHO05D010003 5.5e-06 55.5 77 42.9
SHI18861 Sapria himalayana HOM05D000029 ORTHO05D002544 5.5e-06 55.5 113 33.6
Sed0004625 Sechium edule HOM05D000071 ORTHO05D000029 5.5e-06 55.5 125 28.8
CSS0028292 Camellia sinensis var. sinensis HOM05D000053 ORTHO05D000035 7.2e-06 55.1 99 38.4
CiPaw.05G208900 Carya illinoinensis HOM05D000071 ORTHO05D000029 7.2e-06 55.1 88 40.9
Ciclev10017648m.g Citrus clementina HOM05D000053 ORTHO05D000035 7.2e-06 55.1 98 38.8
Cc07_g16010 Coffea canephora HOM05D000033 ORTHO05D001614 7.2e-06 55.1 106 37.7
DCAR_028662 Daucus carota HOM05D000053 ORTHO05D000035 7.2e-06 55.1 89 39.3
Dinv38207 Davidia involucrata HOM05D000071 ORTHO05D000029 7.2e-06 55.1 100 32.0
Migut.M00450 Erythranthe guttata HOM05D000071 ORTHO05D000029 7.2e-06 55.1 132 32.6
Gohir.D11G308250 Gossypium hirsutum HOM05D000071 ORTHO05D000029 7.2e-06 55.1 130 30.8
Gorai.007G337200 Gossypium raimondii HOM05D000071 ORTHO05D000029 7.2e-06 55.1 102 34.3
MD05G1075800 Malus domestica HOM05D000021 ORTHO05D000010 7.2e-06 55.1 99 37.4
Phvul.004G142500 Phaseolus vulgaris HOM05D000311 ORTHO05D000183 7.2e-06 55.1 127 32.3
Phvul.009G140500 Phaseolus vulgaris HOM05D000033 ORTHO05D001614 7.2e-06 55.1 97 37.1
PGR031G0160 Punica granatum HOM05D000053 ORTHO05D000035 7.2e-06 55.1 99 38.4
RcHm_v2.0_Chr6g0259721 Rosa chinensis HOM05D000071 ORTHO05D000029 7.2e-06 55.1 97 38.1
Sopen05g002610 Solanum pennellii HOM05D003705 ORTHO05D010003 7.2e-06 55.1 126 33.3
TPR.G29147 Trifolium pratense HOM05D000071 ORTHO05D000029 7.2e-06 55.1 95 35.8
VMungo1309G0168 Vigna mungo HOM05D000033 ORTHO05D001614 7.2e-06 55.1 109 33.9
BraA06t26571Z Brassica rapa HOM05D000029 ORTHO05D001072 9.4e-06 54.7 93 39.8
CSS0021584 Camellia sinensis var. sinensis HOM05D000053 ORTHO05D000035 9.4e-06 54.7 99 37.4
Cfa010261 Carpinus fangiana HOM05D000033 ORTHO05D001614 9.4e-06 54.7 118 30.5
Cfa012628 Carpinus fangiana HOM05D000311 ORTHO05D000183 9.4e-06 54.7 98 39.8
CiPaw.09G212300 Carya illinoinensis HOM05D000053 ORTHO05D000448 9.4e-06 54.7 131 31.3
Ciclev10010871m.g Citrus clementina HOM05D000053 ORTHO05D000035 9.4e-06 54.7 103 38.8
Gorai.007G340000 Gossypium raimondii HOM05D000071 ORTHO05D000029 9.4e-06 54.7 102 36.3
Lj2A767T14 Lonicera japonica HOM05D000053 ORTHO05D000448 9.4e-06 54.7 98 36.7
Lj2C771T0 Lonicera japonica HOM05D000053 ORTHO05D000448 9.4e-06 54.7 98 36.7
Phvul.004G095900 Phaseolus vulgaris HOM05D000071 ORTHO05D000029 9.4e-06 54.7 126 30.2
QL08p006429 Quercus lobata HOM05D000053 ORTHO05D000035 9.4e-06 54.7 103 34.0
Hund02833 Selenicereus undatus HOM05D000053 ORTHO05D000035 9.4e-06 54.7 125 35.2
Sopen07g028050 Solanum pennellii HOM05D000071 ORTHO05D000029 9.4e-06 54.7 131 30.5
Thecc.05G011300 Theobroma cacao HOM05D000053 ORTHO05D000448 9.4e-06 54.7 96 37.5


User provided reference genes

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