Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G32049 Trifolium pratense HOM05D000075 ORTHO05D411392 9.9e-42 173.3 107 100.0
TPR.G24732 Trifolium pratense HOM05D000075 ORTHO05D000073 1.9e-24 115.9 108 60.2
TPR.G24729 Trifolium pratense HOM05D000075 ORTHO05D000073 1.2e-15 86.7 103 52.4
Medtr7g065230 Medicago truncatula HOM05D000075 ORTHO05D000073 3.5e-15 85.1 114 45.6
TPR.G18267 Trifolium pratense HOM05D000075 ORTHO05D000073 6.0e-15 84.3 102 51.0
TPR.G18276 Trifolium pratense HOM05D000075 ORTHO05D000073 1.0e-14 83.6 102 52.0
Psat3g133720 Pisum sativum HOM05D000075 ORTHO05D000073 3.0e-14 82.0 114 44.7
Medtr7g065590 Medicago truncatula HOM05D000075 ORTHO05D000073 5.1e-14 81.3 102 48.0
TPR.G24728 Trifolium pratense HOM05D000075 ORTHO05D000073 6.7e-14 80.9 97 49.5
Medtr7g065270 Medicago truncatula HOM05D000075 ORTHO05D000073 1.3e-12 76.6 114 43.9
Medtr7g065600 Medicago truncatula HOM05D000075 ORTHO05D000073 1.3e-12 76.6 102 46.1
Medtr7g065260 Medicago truncatula HOM05D000075 ORTHO05D000073 2.1e-12 75.9 102 46.1
TPR.G24731 Trifolium pratense HOM05D000075 ORTHO05D000073 2.1e-12 75.9 114 41.2
Medtr7g065265 Medicago truncatula HOM05D000075 ORTHO05D000073 4.8e-12 74.7 101 45.5
VMungo1383G0709 Vigna mungo HOM05D000075 ORTHO05D000073 6.2e-12 74.3 102 44.1
Medtr7g065290 Medicago truncatula HOM05D000075 ORTHO05D000073 8.2e-12 73.9 114 42.1
Glyma.07G139700 Glycine max HOM05D000075 ORTHO05D000073 1.1e-11 73.6 114 42.1
Lj1g0000335 Lotus japonicus HOM05D000075 ORTHO05D000073 1.1e-11 73.6 102 43.1
Medtr7g065630 Medicago truncatula HOM05D000075 ORTHO05D000073 1.1e-11 73.6 102 43.1
TPR.G29061 Trifolium pratense HOM05D000075 ORTHO05D000073 1.1e-11 73.6 45 80.0
Glyma.18G190200 Glycine max HOM05D000075 ORTHO05D000073 1.8e-11 72.8 102 43.1
Glyma.07G139800 Glycine max HOM05D000075 ORTHO05D000073 2.4e-11 72.4 114 42.1
Lj1g0015692 Lotus japonicus HOM05D000075 ORTHO05D000073 2.4e-11 72.4 102 44.1
Lj1g0024920 Lotus japonicus HOM05D000075 ORTHO05D000073 4.0e-11 71.6 102 43.1
Medtr7g065720 Medicago truncatula HOM05D000075 ORTHO05D000073 4.0e-11 71.6 101 41.6
Ca_07578_v3 Cicer arietinum L. HOM05D000075 ORTHO05D000073 5.3e-11 71.2 102 41.2
Glyma.18G190500 Glycine max HOM05D000075 ORTHO05D000073 6.9e-11 70.9 102 42.2
Ca_07575_v3 Cicer arietinum L. HOM05D000075 ORTHO05D000073 9.0e-11 70.5 101 43.6
Ca_07576_v3 Cicer arietinum L. HOM05D000075 ORTHO05D000073 9.0e-11 70.5 102 40.2
Ca_28102_v3 Cicer arietinum L. HOM05D000075 ORTHO05D000073 9.0e-11 70.5 114 40.4
Glyma.07G140000 Glycine max HOM05D000075 ORTHO05D000073 9.0e-11 70.5 102 41.2
Glyma.18G190300 Glycine max HOM05D000075 ORTHO05D000073 9.0e-11 70.5 102 42.2
Psat3g134400 Pisum sativum HOM05D000075 ORTHO05D000073 9.0e-11 70.5 102 41.2
Glyma.07G139600 Glycine max HOM05D000075 ORTHO05D000073 1.2e-10 70.1 102 41.2
Lj2g0024980 Lotus japonicus HOM05D000075 ORTHO05D000073 1.2e-10 70.1 118 38.1
TPR.G24725 Trifolium pratense HOM05D000075 ORTHO05D000073 1.2e-10 70.1 102 41.2
TPR.G30620 Trifolium pratense HOM05D000075 ORTHO05D000073 1.2e-10 70.1 102 43.1
Medtr7g065680 Medicago truncatula HOM05D000075 ORTHO05D000073 1.5e-10 69.7 102 42.2
Psat3g133800 Pisum sativum HOM05D000075 ORTHO05D000073 1.5e-10 69.7 119 38.7
Psat3g133680 Pisum sativum HOM05D000075 ORTHO05D000073 2.0e-10 69.3 122 40.2
Glyma.07G140400 Glycine max HOM05D000075 ORTHO05D000073 2.6e-10 68.9 102 42.2
Glyma.07G140700 Glycine max HOM05D000075 ORTHO05D000073 2.6e-10 68.9 102 42.2
Lalb_Chr03g0042741 Lupinus albus HOM05D000075 ORTHO05D000073 2.6e-10 68.9 114 39.5
Psat3g134360 Pisum sativum HOM05D000075 ORTHO05D000073 2.6e-10 68.9 102 41.2
Glyma.07G140200 Glycine max HOM05D000075 ORTHO05D000073 3.4e-10 68.6 102 41.2
VMungo1383G1456 Vigna mungo HOM05D000075 ORTHO05D000073 3.4e-10 68.6 102 41.2
VMungo1383G0417 Vigna mungo HOM05D000075 ORTHO05D000073 4.5e-10 68.2 102 40.2
TPR.G24726 Trifolium pratense HOM05D000075 ORTHO05D000073 5.8e-10 67.8 102 41.2
Medtr7g065710 Medicago truncatula HOM05D000075 ORTHO05D000073 7.6e-10 67.4 107 43.0
Psat3g134200 Pisum sativum HOM05D000075 ORTHO05D000073 1.0e-09 67.0 109 40.4
TPR.G13629 Trifolium pratense HOM05D000075 ORTHO05D000073 1.3e-09 66.6 102 40.2
Medtr7g065700 Medicago truncatula HOM05D000075 ORTHO05D000073 1.7e-09 66.2 102 40.2
Psat3g134080 Pisum sativum HOM05D000075 ORTHO05D000073 1.7e-09 66.2 102 38.2
Lj1g0005340 Lotus japonicus HOM05D000075 ORTHO05D000073 2.2e-09 65.9 114 40.4
Phvul.008G113600 Phaseolus vulgaris HOM05D000075 ORTHO05D000073 2.2e-09 65.9 102 42.2
Thhalv10017257m.g Eutrema salsugineum HOM05D000075 ORTHO05D000073 2.9e-09 65.5 98 41.8
Glyma.07G139900 Glycine max HOM05D000075 ORTHO05D000073 2.9e-09 65.5 114 36.8
arahy.Tifrunner.gnm1.ann1.34CRUF Arachis hypogaea HOM05D000075 ORTHO05D000073 4.9e-09 64.7 97 41.2
arahy.Tifrunner.gnm1.ann1.3V8BTX Arachis hypogaea HOM05D000075 ORTHO05D000073 4.9e-09 64.7 97 41.2
arahy.Tifrunner.gnm1.ann1.A6QHK2 Arachis hypogaea HOM05D000075 ORTHO05D000073 4.9e-09 64.7 102 38.2
Lj1g0019848 Lotus japonicus HOM05D000075 ORTHO05D000073 4.9e-09 64.7 102 39.2
Medtr7g065660 Medicago truncatula HOM05D000075 ORTHO05D000073 4.9e-09 64.7 102 39.2
Psat3g133640 Pisum sativum HOM05D000075 ORTHO05D000073 4.9e-09 64.7 102 38.2
Psat3g134320 Pisum sativum HOM05D000075 ORTHO05D000073 6.5e-09 64.3 97 40.2
Glyma.07G140100 Glycine max HOM05D000075 ORTHO05D000073 8.4e-09 63.9 102 38.2
Medtr7g065640 Medicago truncatula HOM05D000075 ORTHO05D000073 8.4e-09 63.9 114 37.7
Medtr7g065740 Medicago truncatula HOM05D000075 ORTHO05D000073 8.4e-09 63.9 102 37.3
arahy.Tifrunner.gnm1.ann1.BS9BXS Arachis hypogaea HOM05D000075 ORTHO05D000073 1.1e-08 63.5 97 40.2
arahy.Tifrunner.gnm1.ann1.GNE51Z Arachis hypogaea HOM05D000075 ORTHO05D000073 1.1e-08 63.5 97 40.2
arahy.Tifrunner.gnm1.ann1.ZH4XKZ Arachis hypogaea HOM05D000075 ORTHO05D000073 1.1e-08 63.5 102 37.3
Lalb_Chr19g0125001 Lupinus albus HOM05D000075 ORTHO05D000073 1.1e-08 63.5 102 38.2
Lalb_Chr19g0124991 Lupinus albus HOM05D000075 ORTHO05D000073 1.4e-08 63.2 114 36.8
Medtr7g065750 Medicago truncatula HOM05D000075 ORTHO05D000073 1.4e-08 63.2 102 36.3
Eucgr.K03021 Eucalyptus grandis HOM05D000075 ORTHO05D000073 1.9e-08 62.8 115 35.7
Psat3g133600 Pisum sativum HOM05D000075 ORTHO05D000073 1.9e-08 62.8 102 38.2
Lj1g0004506 Lotus japonicus HOM05D000075 ORTHO05D000073 2.5e-08 62.4 114 36.8
Ca_07577_v3 Cicer arietinum L. HOM05D000075 ORTHO05D000073 3.2e-08 62.0 127 34.6
Phvul.008G113700 Phaseolus vulgaris HOM05D000075 ORTHO05D000073 5.5e-08 61.2 102 36.3
Eucgr.K03029 Eucalyptus grandis HOM05D000075 ORTHO05D000073 7.1e-08 60.8 110 36.4
Eucgr.K03034 Eucalyptus grandis HOM05D000075 ORTHO05D000073 7.1e-08 60.8 110 36.4
Glyma.07G140300 Glycine max HOM05D000075 ORTHO05D000073 1.2e-07 60.1 99 39.4
TWI75G0675 Tripterygium wilfordii HOM05D000075 ORTHO05D000073 1.2e-07 60.1 115 34.8
Hma1.2p1_0671F.1_g200620 Hydrangea macrophylla HOM05D000075 ORTHO05D000073 1.6e-07 59.7 109 37.6
AL3G20390 Arabidopsis lyrata HOM05D000075 ORTHO05D000073 2.1e-07 59.3 114 34.2
Eucgr.K03024 Eucalyptus grandis HOM05D000075 ORTHO05D000073 2.1e-07 59.3 103 36.9
Hma1.2p1_0671F.1_g200610 Hydrangea macrophylla HOM05D000075 ORTHO05D000073 2.1e-07 59.3 109 37.6
QL03p063338 Quercus lobata HOM05D000075 ORTHO05D000073 2.1e-07 59.3 68 47.1
ATR0620G141 Amborella trichopoda HOM05D000075 ORTHO05D000073 2.7e-07 58.9 109 37.6
Dinv37110 Davidia involucrata HOM05D000075 ORTHO05D000073 2.7e-07 58.9 111 37.8
Eucgr.K03036 Eucalyptus grandis HOM05D000075 ORTHO05D000073 2.7e-07 58.9 110 36.4
FAN09G4452 Fragaria x ananassa HOM05D000075 ORTHO05D000073 3.5e-07 58.5 124 34.7
Glyma.01G106000 Glycine max HOM05D000075 ORTHO05D000073 3.5e-07 58.5 112 34.8
RcHm_v2.0_Chr3g0464521 Rosa chinensis HOM05D000075 ORTHO05D000073 3.5e-07 58.5 118 38.1
AT3G09270 Arabidopsis thaliana HOM05D000075 ORTHO05D000073 4.6e-07 58.2 114 34.2
Nn5g30780 Nelumbo nucifera HOM05D000075 ORTHO05D000073 6.0e-07 57.8 96 39.6
Thecc.09G312200 Theobroma cacao HOM05D000075 ORTHO05D000073 6.0e-07 57.8 112 33.9
CSS0010169 Camellia sinensis var. sinensis HOM05D000075 ORTHO05D000073 7.9e-07 57.4 97 38.1
FAN05G4908 Fragaria x ananassa HOM05D000075 ORTHO05D000073 7.9e-07 57.4 109 37.6
Peaxi162Scf00132g01013 Petunia axillaris HOM05D000075 ORTHO05D000073 7.9e-07 57.4 105 37.1
Thecc.09G312100 Theobroma cacao HOM05D000075 ORTHO05D000073 7.9e-07 57.4 121 34.7
TAR636G2344 Trochodendron aralioides HOM05D000075 ORTHO05D000073 7.9e-07 57.4 108 37.0
AT2G29420 Arabidopsis thaliana HOM05D000075 ORTHO05D000073 1.0e-06 57.0 124 34.7
Eucgr.K03030 Eucalyptus grandis HOM05D000075 ORTHO05D000073 1.0e-06 57.0 115 35.7
Eucgr.K03031 Eucalyptus grandis HOM05D000075 ORTHO05D000073 1.0e-06 57.0 98 35.7
FvH4_6g12680 Fragaria vesca HOM05D000075 ORTHO05D000073 1.0e-06 57.0 114 36.0
Glyma.01G106100 Glycine max HOM05D000075 ORTHO05D000073 1.0e-06 57.0 115 33.0
HanXRQChr16g0515451 Helianthus annuus HOM05D000075 ORTHO05D000073 1.0e-06 57.0 96 39.6
TPR.G24724 Trifolium pratense HOM05D000075 ORTHO05D000073 1.0e-06 57.0 46 60.9
AL4G23980 Arabidopsis lyrata HOM05D000075 ORTHO05D000073 1.8e-06 56.2 121 33.9
Ciclev10012710m.g Citrus clementina HOM05D000075 ORTHO05D000073 1.8e-06 56.2 97 37.1
Os10g0529700 Oryza sativa ssp. japonica HOM05D000075 ORTHO05D000073 1.8e-06 56.2 101 33.7
Atru.chr8.2099 Acer truncatum HOM05D000075 ORTHO05D000073 2.3e-06 55.8 97 37.1
ATR0620G148 Amborella trichopoda HOM05D000075 ORTHO05D000073 2.3e-06 55.8 97 38.1
AL558U10030 Arabidopsis lyrata HOM05D000075 ORTHO05D000073 2.3e-06 55.8 121 33.9
COL.COLO4_14691 Corchorus olitorius HOM05D000075 ORTHO05D000073 2.3e-06 55.8 100 37.0
Haze_20896 Corylus avellana HOM05D000075 ORTHO05D000073 2.3e-06 55.8 109 35.8
GSVIVG01024852001 Vitis vinifera HOM05D000075 ORTHO05D000073 2.3e-06 55.8 101 33.7
BraA04t17791Z Brassica rapa HOM05D000075 ORTHO05D000073 3.0e-06 55.5 118 37.3
Duzib052G1082 Durio zibethinus HOM05D000075 ORTHO05D000073 3.0e-06 55.5 124 34.7
Hma1.2p1_1076F.1_g254580 Hydrangea macrophylla HOM05D000075 ORTHO05D000073 3.0e-06 55.5 76 47.4
Medtr4g019790 Medicago truncatula HOM05D000075 ORTHO05D000073 3.0e-06 55.5 114 30.7
Sp4g12180 Schrenkiella parvula HOM05D000075 ORTHO05D000073 3.0e-06 55.5 118 34.7
Thecc.05G028300 Theobroma cacao HOM05D000075 ORTHO05D000073 3.0e-06 55.5 110 34.5
ATR0620G012 Amborella trichopoda HOM05D000075 ORTHO05D000073 3.9e-06 55.1 129 31.8
EL10Ac6g13124 Beta vulgaris HOM05D000075 ORTHO05D000073 3.9e-06 55.1 98 35.7
C04p58610 Brassica napus HOM05D000075 ORTHO05D000073 3.9e-06 55.1 102 34.3
CARHR122730 Cardamine hirsuta HOM05D000075 ORTHO05D000073 3.9e-06 55.1 102 35.3
CARHR122750 Cardamine hirsuta HOM05D000075 ORTHO05D000073 3.9e-06 55.1 123 34.1
COL.COLO4_18606 Corchorus olitorius HOM05D000075 ORTHO05D000073 3.9e-06 55.1 97 35.1
SalBow7G4745 Salvia bowleyana HOM05D000075 ORTHO05D000073 3.9e-06 55.1 70 47.1
THA.LOC104800705 Tarenaya hassleriana HOM05D000075 ORTHO05D000073 3.9e-06 55.1 100 35.0
BcaB06g28311 Brassica carinata HOM05D000075 ORTHO05D000073 5.1e-06 54.7 102 33.3
BcaC02g08085 Brassica carinata HOM05D000075 ORTHO05D014840 5.1e-06 54.7 102 34.3
BolC4t27376H Brassica oleracea HOM05D000075 ORTHO05D000073 5.1e-06 54.7 118 35.6
Cpa.g.sc56.64 Carica papaya HOM05D000075 ORTHO05D000073 5.1e-06 54.7 104 36.5
Duzib128G0980 Durio zibethinus HOM05D000075 ORTHO05D000073 5.1e-06 54.7 112 36.6
Eucgr.K03019 Eucalyptus grandis HOM05D000075 ORTHO05D000073 5.1e-06 54.7 103 35.9
Thhalv10017210m.g Eutrema salsugineum HOM05D000075 ORTHO05D000073 5.1e-06 54.7 118 34.7
Glyma.03G073704 Glycine max HOM05D000075 ORTHO05D000073 5.1e-06 54.7 115 31.3
Glyma.07G140551 Glycine max HOM05D000075 ORTHO05D000073 5.1e-06 54.7 63 46.0
Sabra08G0042100 Salix brachista HOM05D000075 ORTHO05D000073 5.1e-06 54.7 96 36.5
Thecc.05G028100 Theobroma cacao HOM05D000075 ORTHO05D000073 5.1e-06 54.7 110 33.6
TPR.G32558 Trifolium pratense HOM05D000075 ORTHO05D000073 5.1e-06 54.7 111 34.2
TWI36G0563 Tripterygium wilfordii HOM05D000075 ORTHO05D000073 5.1e-06 54.7 100 36.0
Atru.chr8.2096_Atru.chr8.2097 Acer truncatum HOM05D000075 ORTHO05D000073 6.7e-06 54.3 97 37.1
A04p22430 Brassica napus HOM05D000075 ORTHO05D000073 6.7e-06 54.3 118 37.3
A04p22470 Brassica napus HOM05D000075 ORTHO05D000073 6.7e-06 54.3 102 33.3
Carub.0004s1054 Capsella rubella HOM05D000075 ORTHO05D000073 6.7e-06 54.3 107 34.6
Ca_25872_v3 Cicer arietinum L. HOM05D000075 ORTHO05D000073 6.7e-06 54.3 114 31.6
Duzib106G0866 Durio zibethinus HOM05D000075 ORTHO05D000073 6.7e-06 54.3 98 33.7
Duzib106G1930 Durio zibethinus HOM05D000075 ORTHO05D000073 6.7e-06 54.3 98 33.7
Eucgr.K03039 Eucalyptus grandis HOM05D000075 ORTHO05D000073 6.7e-06 54.3 103 35.0
Hma1.2p1_0289F.1_g114260 Hydrangea macrophylla HOM05D000075 ORTHO05D000073 6.7e-06 54.3 96 36.5
Os10g0527800 Oryza sativa ssp. japonica HOM05D000075 ORTHO05D000073 6.7e-06 54.3 143 28.7
SEGI_07989 Sequoiadendron giganteum HOM05D000075 ORTHO05D000264 6.7e-06 54.3 127 32.3
TAR636G3013 Trochodendron aralioides HOM05D000075 ORTHO05D000073 6.7e-06 54.3 112 37.5
vmacro20198 Vaccinium macrocarpon HOM05D000075 ORTHO05D000073 6.7e-06 54.3 114 35.1
VMungo0331G0436 Vigna mungo HOM05D000075 ORTHO05D000073 6.7e-06 54.3 114 31.6
AL4G24060 Arabidopsis lyrata HOM05D000075 ORTHO05D000073 8.7e-06 53.9 102 35.3
C04p58580 Brassica napus HOM05D000075 ORTHO05D000073 8.7e-06 53.9 118 34.7
BolC4t27379H Brassica oleracea HOM05D000075 ORTHO05D000073 8.7e-06 53.9 102 33.3
BolC4t27384H Brassica oleracea HOM05D000075 ORTHO05D000073 8.7e-06 53.9 102 36.3
COL.COLO4_36223 Corchorus olitorius HOM05D000075 ORTHO05D000073 8.7e-06 53.9 104 31.7
ECA236G4425 Erigeron canadensis HOM05D000075 ORTHO05D000073 8.7e-06 53.9 98 36.7
Gohir.D11G318166 Gossypium hirsutum HOM05D000075 ORTHO05D036118 8.7e-06 53.9 101 33.7
Lj3A1043T85 Lonicera japonica HOM05D000075 ORTHO05D000073 8.7e-06 53.9 96 36.5
MBI12_g22450_MAGBIO Magnolia biondii HOM05D000075 ORTHO05D000073 8.7e-06 53.9 97 37.1
MD04G1139500 Malus domestica HOM05D000075 ORTHO05D000073 8.7e-06 53.9 102 37.3
Oeu053799.1 Olea europaea HOM05D000075 ORTHO05D000073 8.7e-06 53.9 96 38.5
Oeu057169.1 Olea europaea HOM05D000075 ORTHO05D000073 8.7e-06 53.9 97 36.1
THA.LOC104815796 Tarenaya hassleriana HOM05D000075 ORTHO05D000073 8.7e-06 53.9 97 35.1


User provided reference genes

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