Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G12057 Trifolium pratense HOM05D006332 ORTHO05D008421 5.0e-15 83.2 40 100.0
TPR.G32042 Trifolium pratense HOM05D006332 ORTHO05D034078 5.0e-15 83.2 40 100.0
Glyma.07G195200 Glycine max HOM05D006332 ORTHO05D008421 8.6e-15 82.4 40 97.5
Glyma.13G181100 Glycine max HOM05D006332 ORTHO05D008421 8.6e-15 82.4 40 97.5
Lalb_Chr16g0383661 Lupinus albus HOM05D006332 ORTHO05D008421 1.9e-14 81.3 40 95.0
Phvul.002G227700 Phaseolus vulgaris HOM05D006332 ORTHO05D008421 3.3e-14 80.5 40 95.0
Ca_18532_v3 Cicer arietinum L. HOM05D006332 ORTHO05D008421 5.6e-14 79.7 40 92.5
Psat7g112800 Pisum sativum HOM05D006332 ORTHO05D008421 5.6e-14 79.7 40 95.0
Lj4g0020818 Lotus japonicus HOM05D006332 ORTHO05D008421 9.5e-14 79.0 40 90.0
Medtr4g088960 Medicago truncatula HOM05D006332 ORTHO05D008421 1.2e-13 78.6 40 92.5
QL05p039635 Quercus lobata HOM05D006332 ORTHO05D008421 6.8e-12 72.8 39 89.7
VMungo0251G1219 Vigna mungo HOM05D006332 ORTHO05D008421 2.0e-11 71.2 34 94.1
CiPaw.09G057500 Carya illinoinensis HOM05D006332 ORTHO05D008421 3.4e-11 70.5 40 85.0
MD05G1316100 Malus domestica HOM05D006332 ORTHO05D008421 3.4e-11 70.5 40 82.5
MD10G1296600 Malus domestica HOM05D006332 ORTHO05D008421 4.4e-11 70.1 40 82.5
Prupe.4G044000 Prunus persica HOM05D006332 ORTHO05D008421 4.4e-11 70.1 40 80.0
AUR62014792 Chenopodium quinoa HOM05D006332 ORTHO05D008421 5.7e-11 69.7 40 82.5
TAR629G2846 Trochodendron aralioides HOM05D006332 ORTHO05D008421 5.7e-11 69.7 40 80.0
FvH4_3g04870 Fragaria vesca HOM05D006332 ORTHO05D008421 9.8e-11 68.9 40 80.0
FAN11G2101 Fragaria x ananassa HOM05D003523 ORTHO05D004493 9.8e-11 68.9 40 80.0
FAN16G1437 Fragaria x ananassa HOM05D006332 ORTHO05D008421 9.8e-11 68.9 40 80.0
RcHm_v2.0_Chr5g0008031 Rosa chinensis HOM05D006332 ORTHO05D008421 9.8e-11 68.9 40 80.0
Hund21245 Selenicereus undatus HOM05D006332 ORTHO05D008421 2.2e-10 67.8 40 80.0
arahy.Tifrunner.gnm1.ann1.5TP18E Arachis hypogaea HOM05D006332 ORTHO05D008421 3.7e-10 67.0 38 81.6
COL.COLO4_31500 Corchorus olitorius HOM05D006332 ORTHO05D008421 4.9e-10 66.6 40 77.5
GSVIVG01002030001 Vitis vinifera HOM05D006332 ORTHO05D008421 4.9e-10 66.6 37 81.1
TWI38G1702 Tripterygium wilfordii HOM05D006332 ORTHO05D008421 6.4e-10 66.2 40 77.5
Medtr2g027310 Medicago truncatula HOM05D006332 ORTHO05D034078 8.3e-10 65.9 34 88.2
Atru.chr10.1933 Acer truncatum HOM05D006332 ORTHO05D008421 1.1e-09 65.5 40 75.0
MELO3C002589.2 Cucumis melo HOM05D006332 ORTHO05D008421 1.1e-09 65.5 41 75.6
CsaV3_1G012160 Cucumis sativus L. HOM05D006332 ORTHO05D008421 1.1e-09 65.5 41 78.0
Manes.16G025600 Manihot esculenta HOM05D006332 ORTHO05D008421 1.1e-09 65.5 40 75.0
CANSAT35G2021 Cannabis sativa HOM05D006332 ORTHO05D008421 1.4e-09 65.1 40 77.5
Dinv07538 Davidia involucrata HOM05D006332 ORTHO05D008421 1.4e-09 65.1 40 80.0
PGR004G2698 Punica granatum HOM05D006332 ORTHO05D008421 1.4e-09 65.1 39 74.4
arahy.Tifrunner.gnm1.ann1.I941VF Arachis hypogaea HOM05D006332 ORTHO05D008421 2.4e-09 64.3 33 87.9
Potri.004G040500 Populus trichocarpa HOM05D006332 ORTHO05D008421 2.4e-09 64.3 38 76.3
Actinidia01892 Actinidia chinensis HOM05D006332 ORTHO05D008421 3.2e-09 63.9 39 71.8
Cc02_g13080 Coffea canephora HOM05D006332 ORTHO05D008421 3.2e-09 63.9 39 79.5
HanXRQChr04g0124141 Helianthus annuus HOM05D006332 ORTHO05D008421 3.2e-09 63.9 39 71.8
Sed0003237 Sechium edule HOM05D006332 ORTHO05D008421 3.2e-09 63.9 41 75.6
CSS0022240 Camellia sinensis var. sinensis HOM05D006332 ORTHO05D008421 5.4e-09 63.2 40 72.5
Hma1.2p1_0881F.1_g231970 Hydrangea macrophylla HOM05D006332 ORTHO05D008421 5.4e-09 63.2 39 74.4
Nn6g34413 Nelumbo nucifera HOM05D006332 ORTHO05D008421 9.2e-09 62.4 40 67.5
Cpa.g.sc777.3 Carica papaya HOM05D006332 ORTHO05D034078 1.2e-08 62.0 37 75.7
Cpa.g.sc27.66 Carica papaya HOM05D006332 ORTHO05D008421 1.6e-08 61.6 34 76.5
Gohir.A06G126100 Gossypium hirsutum HOM05D006332 ORTHO05D008421 1.6e-08 61.6 40 70.0
Eucgr.D00641 Eucalyptus grandis HOM05D006332 ORTHO05D008421 2.0e-08 61.2 38 76.3
Cfa000416 Carpinus fangiana HOM05D006332 ORTHO05D008421 3.5e-08 60.5 33 81.8
Ciclev10015324m.g Citrus clementina HOM05D006332 ORTHO05D008421 3.5e-08 60.5 40 75.0
Gohir.D06G130900 Gossypium hirsutum HOM05D006332 ORTHO05D008421 3.5e-08 60.5 40 70.0
Duzib192G0908 Durio zibethinus HOM05D006332 ORTHO05D008421 5.9e-08 59.7 39 66.7
ECA236G3091 Erigeron canadensis HOM05D006332 ORTHO05D008421 5.9e-08 59.7 39 66.7
Thecc.06G190700 Theobroma cacao HOM05D006332 ORTHO05D008421 5.9e-08 59.7 40 67.5
HPP92_001753 Vanilla planifolia HOM05D006332 ORTHO05D008421 5.9e-08 59.7 40 65.0
Haze_06500 Corylus avellana HOM05D006332 ORTHO05D008421 7.8e-08 59.3 33 81.8
ClCG03G005920 Citrullus lanatus HOM05D006332 ORTHO05D008421 1.0e-07 58.9 35 77.1
Duzib235G1125 Durio zibethinus HOM05D006332 ORTHO05D008421 1.3e-07 58.5 37 70.3
FAN21G2488 Fragaria x ananassa HOM05D003523 ORTHO05D004493 1.3e-07 58.5 33 78.8
Gohir.A10G024200 Gossypium hirsutum HOM05D006332 ORTHO05D008421 1.3e-07 58.5 40 62.5
Lj1C1207T6 Lonicera japonica HOM05D006332 ORTHO05D008421 1.3e-07 58.5 34 73.5
Nitab4.5_0003942g0020 Nicotiana tabacum HOM05D006332 ORTHO05D008421 1.3e-07 58.5 37 70.3
Peaxi162Scf00530g00823 Petunia axillaris HOM05D006332 ORTHO05D008421 1.3e-07 58.5 37 70.3
Solyc10g008990.4 Solanum lycopersicum HOM05D006332 ORTHO05D008421 1.3e-07 58.5 37 70.3
Sopen10g004770 Solanum pennellii HOM05D006332 ORTHO05D008421 1.3e-07 58.5 37 70.3
PGSC0003DMG400022831 Solanum tuberosum HOM05D006332 ORTHO05D008421 1.3e-07 58.5 37 70.3
AUR62016979 Chenopodium quinoa HOM05D006332 ORTHO05D008421 1.7e-07 58.2 33 78.8
Nitab4.5_0009738g0010 Nicotiana tabacum HOM05D006332 ORTHO05D008421 1.7e-07 58.2 37 67.6
Aqoxy1G02544 Aquilegia oxysepala HOM05D006332 ORTHO05D008421 2.3e-07 57.8 38 63.2
AT2G47960 Arabidopsis thaliana HOM05D006332 ORTHO05D008421 2.3e-07 57.8 40 65.0
EL10Ac8g20347 Beta vulgaris HOM05D006332 ORTHO05D008421 3.0e-07 57.4 33 78.8
THA.LOC104817534 Tarenaya hassleriana HOM05D006332 ORTHO05D008421 3.0e-07 57.4 40 65.0
HanXRQChr01g0003951 Helianthus annuus HOM05D006332 ORTHO05D008421 5.0e-07 56.6 37 64.9
BcaB02g08727 Brassica carinata HOM05D006332 ORTHO05D008421 6.6e-07 56.2 40 62.5
Carub.0004s3069 Capsella rubella HOM05D006332 ORTHO05D008421 8.6e-07 55.8 40 62.5
Sabra04G0025000 Salix brachista HOM05D006332 ORTHO05D008421 8.6e-07 55.8 33 75.8
Sp4g29880 Schrenkiella parvula HOM05D006332 ORTHO05D008421 8.6e-07 55.8 40 62.5
BcaC02g12534 Brassica carinata HOM05D006332 ORTHO05D008421 1.5e-06 55.1 40 62.5
PSO063G3883 Papaver somniferum HOM05D006332 ORTHO05D008421 1.5e-06 55.1 40 60.0
Migut.H01511 Erythranthe guttata HOM05D006332 ORTHO05D008421 1.9e-06 54.7 40 65.0
AL4G47550 Arabidopsis lyrata HOM05D006332 ORTHO05D008421 2.5e-06 54.3 37 62.2
Duzib160G0593 Durio zibethinus HOM05D006332 ORTHO05D008421 3.3e-06 53.9 34 70.6
Thhalv10018568m.g Eutrema salsugineum HOM05D006332 ORTHO05D008421 5.6e-06 53.1 37 62.2
PSO782G1256 Papaver somniferum HOM05D006332 ORTHO05D008421 5.6e-06 53.1 40 57.5
Aa31LG1G29380 Aethionema arabicum HOM05D006332 ORTHO05D008421 7.3e-06 52.8 37 59.5
MBI17_g03748_MAGBIO Magnolia biondii HOM05D006332 ORTHO05D008421 7.3e-06 52.8 34 61.8
MSTRG.13186 Avicennia marina HOM05D006332 ORTHO05D008421 9.5e-06 52.4 37 64.9
CAN.G413.15 Capsicum annuum HOM05D006332 ORTHO05D008421 9.5e-06 52.4 34 70.6
Gohir.A10G024350 Gossypium hirsutum HOM05D006332 ORTHO05D008421 9.5e-06 52.4 38 55.3
Zm00001eb044550 Zea mays HOM05D006332 ORTHO05D008421 9.5e-06 52.4 40 52.5


User provided reference genes

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