Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G32005 Trifolium pratense HOM05D005279 ORTHO05D006757 0.0e+00 1207.6 607 100.0
Ca_07964_v3 Cicer arietinum L. HOM05D005279 ORTHO05D006757 2.3e-305 1051.6 614 86.3
Medtr7g079510 Medicago truncatula HOM05D005279 ORTHO05D006757 6.3e-303 1043.5 614 85.7
Lj1g0001090 Lotus japonicus HOM05D005279 ORTHO05D006757 4.7e-282 974.2 613 79.1
arahy.Tifrunner.gnm1.ann1.X9YPPN Arachis hypogaea HOM05D005279 ORTHO05D006757 3.1e-265 918.3 616 74.0
Glyma.18G240300 Glycine max HOM05D005279 ORTHO05D006757 1.5e-264 916.0 610 75.4
Glyma.09G252300 Glycine max HOM05D005279 ORTHO05D006757 4.4e-264 914.4 606 76.2
Phvul.008G055900 Phaseolus vulgaris HOM05D005279 ORTHO05D006757 3.2e-262 908.3 601 76.5
Lalb_Chr19g0126771 Lupinus albus HOM05D005279 ORTHO05D006757 6.0e-261 904.0 612 76.0
VMungo1383G2490 Vigna mungo HOM05D005279 ORTHO05D006757 7.8e-261 903.7 613 74.9
Psat3g104240 Pisum sativum HOM05D005279 ORTHO05D006757 1.7e-223 779.6 461 85.5
CiPaw.08G116500 Carya illinoinensis HOM05D005279 ORTHO05D006757 1.1e-217 760.4 607 64.6
Atru.chr12.2109 Acer truncatum HOM05D005279 ORTHO05D006757 4.1e-217 758.4 631 61.3
arahy.Tifrunner.gnm1.ann1.GMHU8S Arachis hypogaea HOM05D005279 ORTHO05D006757 4.7e-213 745.0 617 62.9
MD12G1258400 Malus domestica HOM05D005279 ORTHO05D006757 1.5e-211 740.0 626 61.7
Ciclev10011262m.g Citrus clementina HOM05D005279 ORTHO05D006757 9.7e-211 737.3 645 58.8
Cfa006283 Carpinus fangiana HOM05D005279 ORTHO05D006757 3.7e-210 735.3 513 70.6
Manes.09G184200 Manihot esculenta HOM05D005279 ORTHO05D006757 1.8e-209 733.0 640 58.9
Eucgr.H01378 Eucalyptus grandis HOM05D005279 ORTHO05D006757 2.6e-208 729.2 637 58.7
TWI23G0564 Tripterygium wilfordii HOM05D005279 ORTHO05D006757 1.0e-207 727.2 646 59.6
TAR633G0866 Trochodendron aralioides HOM05D005279 ORTHO05D006757 1.5e-206 723.4 632 59.0
RcHm_v2.0_Chr3g0448231 Rosa chinensis HOM05D005279 ORTHO05D006757 8.0e-205 717.6 641 58.5
PGR031G1864 Punica granatum HOM05D005279 ORTHO05D006757 1.4e-204 716.8 612 61.1
FvH4_6g00750 Fragaria vesca HOM05D005279 ORTHO05D006757 6.7e-204 714.5 636 57.5
FAN14G2044 Fragaria x ananassa HOM05D005279 ORTHO05D006757 6.7e-204 714.5 636 57.5
Gohir.A08G223900 Gossypium hirsutum HOM05D005279 ORTHO05D006757 6.7e-204 714.5 613 58.1
FAN09G4620 Fragaria x ananassa HOM05D005279 ORTHO05D006757 1.2e-203 713.8 640 58.0
Nn1g08317 Nelumbo nucifera HOM05D005279 ORTHO05D006757 3.3e-203 712.2 637 56.8
Potri.013G087400 Populus trichocarpa HOM05D005279 ORTHO05D006757 5.7e-203 711.4 640 58.3
Duzib128G1767 Durio zibethinus HOM05D005279 ORTHO05D006757 1.3e-202 710.3 604 59.6
Gohir.D08G244200 Gossypium hirsutum HOM05D005279 ORTHO05D006757 1.3e-202 710.3 618 58.6
FAN05G0195 Fragaria x ananassa HOM05D005279 ORTHO05D006757 2.2e-202 709.5 639 57.4
Sed0005684 Sechium edule HOM05D005279 ORTHO05D006757 2.8e-202 709.1 618 58.7
ClCG11G011000 Citrullus lanatus HOM05D005279 ORTHO05D006757 3.7e-202 708.8 596 60.9
Duzib177G0028 Durio zibethinus HOM05D005279 ORTHO05D006757 8.2e-202 707.6 636 56.8
CsaV3_2G009490 Cucumis sativus L. HOM05D005279 ORTHO05D006757 3.1e-201 705.7 618 59.4
Gorai.004G260500 Gossypium raimondii HOM05D005279 ORTHO05D006757 3.1e-201 705.7 618 58.4
Prupe.6G359100 Prunus persica HOM05D005279 ORTHO05D006757 1.6e-200 703.4 510 68.6
AUR62000356 Chenopodium quinoa HOM05D005279 ORTHO05D006757 2.7e-200 702.6 600 60.0
PSO675G1387 Papaver somniferum HOM05D005279 ORTHO05D006757 7.7e-200 701.0 596 58.9
COL.COLO4_19830 Corchorus olitorius HOM05D005279 ORTHO05D006757 1.3e-199 700.3 632 55.7
Rhsim09G0131400 Rhododendron simsii HOM05D005279 ORTHO05D006757 1.7e-199 699.9 653 56.5
vmacro10395 Vaccinium macrocarpon HOM05D005279 ORTHO05D006757 2.9e-199 699.1 631 57.4
MELO3C008759.2 Cucumis melo HOM05D005279 ORTHO05D006757 8.5e-199 697.6 631 57.4
Solyc04g051310.4 Solanum lycopersicum HOM05D005279 ORTHO05D006757 1.5e-198 696.8 640 55.3
Sopen04g022730 Solanum pennellii HOM05D005279 ORTHO05D006757 2.5e-198 696.0 640 55.3
MSTRG.320 Avicennia marina HOM05D005279 ORTHO05D006757 6.1e-197 691.4 634 56.6
BolC3t13400H Brassica oleracea HOM05D005279 ORTHO05D006757 8.0e-197 691.0 623 58.7
Aa31LG11G13130 Aethionema arabicum HOM05D005279 ORTHO05D006757 6.8e-196 688.0 619 57.8
THA.LOC104802949 Tarenaya hassleriana HOM05D005279 ORTHO05D006757 8.8e-196 687.6 640 56.7
A03p07830 Brassica napus HOM05D005279 ORTHO05D006757 7.5e-195 684.5 620 57.7
C03p09050 Brassica napus HOM05D005279 ORTHO05D006757 1.3e-194 683.7 623 58.1
Thhalv10012976m.g Eutrema salsugineum HOM05D005279 ORTHO05D006757 1.7e-194 683.3 615 58.0
Peaxi162Scf00994g00010 Petunia axillaris HOM05D005279 ORTHO05D006757 2.8e-194 682.6 634 55.0
Cc09_g03410 Coffea canephora HOM05D005279 ORTHO05D006757 1.1e-193 680.6 632 55.2
Carub.0006s1472 Capsella rubella HOM05D005279 ORTHO05D006757 4.1e-193 678.7 621 57.5
AT5G16520 Arabidopsis thaliana HOM05D005279 ORTHO05D006757 9.1e-193 677.6 597 57.6
Aqoxy2G03953 Aquilegia oxysepala HOM05D005279 ORTHO05D006757 2.0e-192 676.4 634 55.8
DCAR_023849 Daucus carota HOM05D005279 ORTHO05D006757 2.0e-192 676.4 604 58.4
Sp6g27630 Schrenkiella parvula HOM05D005279 ORTHO05D006757 5.5e-190 668.3 613 57.4
AL6G27470 Arabidopsis lyrata HOM05D005279 ORTHO05D006757 2.1e-189 666.4 606 57.4
CARHR196710 Cardamine hirsuta HOM05D005279 ORTHO05D006757 2.1e-189 666.4 618 57.0
EL10Ac4g09419 Beta vulgaris HOM05D005279 ORTHO05D006757 2.8e-189 666.0 600 57.5
BcaB01g04978 Brassica carinata HOM05D005279 ORTHO05D006757 6.1e-189 664.8 623 57.6
Dinv29119 Davidia involucrata HOM05D005279 ORTHO05D006757 5.2e-188 661.8 441 72.1
Migut.F01884 Erythranthe guttata HOM05D005279 ORTHO05D006757 5.7e-187 658.3 623 57.3
Sabra13G0070000 Salix brachista HOM05D005279 ORTHO05D006757 2.8e-186 656.0 621 56.5
Lsat_1_v5_gn_9_48740 Lactuca sativa HOM05D005279 ORTHO05D006757 8.3e-186 654.4 620 55.8
THA.LOC104827466 Tarenaya hassleriana HOM05D005279 ORTHO05D006757 5.4e-185 651.7 590 58.5
HanXRQChr05g0156961 Helianthus annuus HOM05D005279 ORTHO05D006757 9.2e-185 651.0 607 56.2
Ah.04g158770 Amaranthus hybridus HOM05D005279 ORTHO05D006757 2.7e-184 649.4 608 56.2
GSVIVG01019132001 Vitis vinifera HOM05D005279 ORTHO05D006757 2.7e-184 649.4 561 59.7
Sed0008551 Sechium edule HOM05D005279 ORTHO05D006757 8.0e-181 637.9 494 64.2
Lsat_1_v5_gn_8_2100 Lactuca sativa HOM05D005279 ORTHO05D006757 6.8e-180 634.8 603 56.2
HanXRQChr11g0323931 Helianthus annuus HOM05D005279 ORTHO05D006757 1.1e-177 627.5 604 55.1
Hund29802 Selenicereus undatus HOM05D005279 ORTHO05D006757 1.1e-177 627.5 467 64.9
Hund29803 Selenicereus undatus HOM05D005279 ORTHO05D006757 1.1e-177 627.5 467 64.9
Sc09g0001590 Simmondsia chinensis HOM05D005279 ORTHO05D006757 1.9e-177 626.7 441 69.2
SalBow6G4947 Salvia bowleyana HOM05D005279 ORTHO05D006757 4.6e-176 622.1 613 55.6
Hund07324 Selenicereus undatus HOM05D005279 ORTHO05D006757 1.1e-169 600.9 669 49.5
SGA_v2.0_scaffold122G33172 Striga asiatica HOM05D005279 ORTHO05D006757 1.4e-169 600.5 488 60.5
FAN02G0830 Fragaria x ananassa HOM05D005279 ORTHO05D006757 3.5e-168 595.9 659 50.5
unitig_26.g8932 Utricularia gibba HOM05D005279 ORTHO05D006757 3.0e-167 592.8 597 52.4
ECA232G1216 Erigeron canadensis HOM05D005279 ORTHO05D006757 5.1e-167 592.0 549 57.4
Haze_04526 Corylus avellana HOM05D005279 ORTHO05D006757 3.4e-163 579.3 386 71.8
ATR0609G131 Amborella trichopoda HOM05D005279 ORTHO05D006757 1.3e-162 577.4 512 56.1
CANSAT54G1354 Cannabis sativa HOM05D005279 ORTHO05D006757 2.9e-162 576.2 402 69.4
ECA233G5391 Erigeron canadensis HOM05D005279 ORTHO05D006757 3.9e-159 565.8 532 57.1
Nitab4.5_0000276g0070 Nicotiana tabacum HOM05D005279 ORTHO05D006757 3.4e-155 552.7 531 54.4
Cpa.g.c32193 Carica papaya HOM05D005279 ORTHO05D006757 1.7e-154 550.4 386 68.1
Lj1A580T7 Lonicera japonica HOM05D005279 ORTHO05D006757 7.1e-153 545.0 504 55.4
CSS0033137 Camellia sinensis var. sinensis HOM05D005279 ORTHO05D006757 1.0e-151 541.2 391 67.0
CSS0033709 Camellia sinensis var. sinensis HOM05D005279 ORTHO05D006757 1.0e-151 541.2 391 67.0
Nitab4.5_0000456g0100 Nicotiana tabacum HOM05D005279 ORTHO05D006757 3.9e-151 539.3 524 54.2
Oeu040486.2 Olea europaea HOM05D005279 ORTHO05D006757 1.3e-149 534.3 387 68.0
Oeu010147.1 Olea europaea HOM05D005279 ORTHO05D006757 2.1e-149 533.5 387 68.2
Dinv09865 Davidia involucrata HOM05D005279 ORTHO05D006757 2.5e-142 510.0 454 59.0
SHI13733 Sapria himalayana HOM05D005279 ORTHO05D006757 7.3e-142 508.4 503 53.5
MBI07_g25290_MAGBIO Magnolia biondii HOM05D005279 ORTHO05D006757 4.0e-140 502.7 502 51.0
CDE09G0872 Ceratophyllum demersum HOM05D005279 ORTHO05D006757 1.4e-137 494.2 604 46.2
SEGI_07718 Sequoiadendron giganteum HOM05D005279 ORTHO05D006757 2.4e-137 493.4 468 53.6
AUR62006699 Chenopodium quinoa HOM05D005279 ORTHO05D006757 3.9e-135 486.1 453 55.8
BraA03t10110Z Brassica rapa HOM05D005279 ORTHO05D006757 4.3e-134 482.6 469 55.2
Lju5221C0T3 Lonicera japonica HOM05D005279 ORTHO05D006757 4.8e-125 452.6 397 57.7
CAN.G29.21 Capsicum annuum HOM05D005279 ORTHO05D006757 7.6e-123 445.3 341 61.9
Os01g0100500 Oryza sativa ssp. japonica HOM05D005279 ORTHO05D006757 1.4e-121 441.0 512 46.7
Thecc.05G206100 Theobroma cacao HOM05D005279 ORTHO05D006757 3.0e-119 433.3 453 50.3
Zm00001eb334030 Zea mays HOM05D005279 ORTHO05D006757 6.9e-116 422.2 500 45.6
QL01p050313 Quercus lobata HOM05D005279 ORTHO05D006757 2.6e-115 420.2 299 70.2
Zm00001eb017080 Zea mays HOM05D005279 ORTHO05D006757 1.4e-113 414.5 456 48.7
AUR62012181 Chenopodium quinoa HOM05D005279 ORTHO05D006757 2.3e-111 407.1 523 42.1
Hund16011 Selenicereus undatus HOM05D005279 ORTHO05D006757 3.3e-110 403.3 534 40.1
PGSC0003DMG402016935 Solanum tuberosum HOM05D005279 ORTHO05D006757 2.0e-102 377.5 257 69.6
AagrBONN_evm.TU.Sc2ySwM_228.5255 Anthoceros agrestis HOM05D005279 ORTHO05D006757 4.4e-94 349.7 488 38.7
HPP92_021393 Vanilla planifolia HOM05D005279 ORTHO05D006757 5.7e-94 349.4 483 43.1
Actinidia38912 Actinidia chinensis HOM05D005279 ORTHO05D006757 2.8e-93 347.1 315 57.5
EL10Ac2g04762 Beta vulgaris HOM05D005279 ORTHO05D006757 7.0e-92 342.4 305 53.8
CDE02G4206 Ceratophyllum demersum HOM05D005279 ORTHO05D006757 1.7e-82 311.2 276 54.3
HPP92_025240 Vanilla planifolia HOM05D005279 ORTHO05D006757 1.5e-81 308.1 385 44.7
AUR62022817 Chenopodium quinoa HOM05D005279 ORTHO05D006757 6.3e-69 266.2 470 34.9
CDE12G0554 Ceratophyllum demersum HOM05D005279 ORTHO05D006757 5.0e-66 256.5 193 61.7
RcHm_v2.0_Chr2g0115301 Rosa chinensis HOM05D005279 ORTHO05D006757 6.4e-61 239.6 160 70.0
Ah.16g102880 Amaranthus hybridus HOM05D005279 ORTHO05D006757 6.6e-50 203.0 195 48.7
RcHm_v2.0_Chr7g0239281 Rosa chinensis HOM05D005279 ORTHO05D006757 1.6e-48 198.4 133 69.2
Haze_04527 Corylus avellana HOM05D005279 ORTHO05D006757 2.2e-45 188.0 201 54.7
MD04G1241700 Malus domestica HOM05D005279 ORTHO05D006757 8.4e-45 186.0 262 47.3
PGSC0003DMG401016935 Solanum tuberosum HOM05D005279 ORTHO05D006757 1.4e-39 168.7 252 39.3
Nitab4.5_0000276g0080 Nicotiana tabacum HOM05D005279 ORTHO05D006757 1.7e-34 151.8 124 56.5
QL01p050319 Quercus lobata HOM05D005279 ORTHO05D006757 1.7e-34 151.8 224 44.6
Nitab4.5_0000456g0110 Nicotiana tabacum HOM05D005279 ORTHO05D006757 1.5e-33 148.7 124 55.6
Actinidia34772 Actinidia chinensis HOM05D005279 ORTHO05D006757 2.0e-30 138.3 121 53.7
Lju5221A0T19 Lonicera japonica HOM05D005279 ORTHO05D006757 3.4e-30 137.5 121 57.0
CSS0049023 Camellia sinensis var. sinensis HOM05D005279 ORTHO05D006757 1.2e-27 129.0 216 38.9
Hma1.2p1_0171F.1_g075730 Hydrangea macrophylla HOM05D005279 ORTHO05D006757 2.4e-20 104.8 88 58.0
Oeu010148.1 Olea europaea HOM05D005279 ORTHO05D006757 1.3e-16 92.4 125 42.4
SEGI_28852 Sequoiadendron giganteum HOM05D005279 ORTHO05D006757 4.5e-14 84.0 82 56.1
HPP92_025241 Vanilla planifolia HOM05D005279 ORTHO05D006757 9.3e-12 76.3 122 40.2
Psat4g088520 Pisum sativum HOM05D005279 ORTHO05D044343 1.3e-10 72.4 79 54.4
Hund21883 Selenicereus undatus HOM05D005279 ORTHO05D037448 1.0e-05 56.2 58 50.0
Hund30008 Selenicereus undatus HOM05D005279 ORTHO05D037448 1.0e-05 56.2 58 50.0


User provided reference genes

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