Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G3193 Trifolium pratense HOM05D005283 ORTHO05D006769 0.0e+00 1805.4 963 100.0
Medtr4g119960 Medicago truncatula HOM05D005283 ORTHO05D006769 0.0e+00 1597.8 940 86.2
Psat4g027360 Pisum sativum HOM05D005283 ORTHO05D006769 0.0e+00 1545.4 939 83.0
Ca_21491_v3 Cicer arietinum L. HOM05D005283 ORTHO05D006769 0.0e+00 1511.5 942 82.6
Glyma.07G247100 Glycine max HOM05D005283 ORTHO05D006769 0.0e+00 1409.0 952 75.9
Glyma.17G026900 Glycine max HOM05D005283 ORTHO05D006769 0.0e+00 1393.6 939 76.1
Phvul.003G105900 Phaseolus vulgaris HOM05D005283 ORTHO05D006769 0.0e+00 1373.2 952 75.0
VMungo1215G0467 Vigna mungo HOM05D005283 ORTHO05D006769 0.0e+00 1364.0 952 74.4
Lj4g0026758 Lotus japonicus HOM05D005283 ORTHO05D006769 0.0e+00 1326.2 952 72.9
arahy.Tifrunner.gnm1.ann1.PZAP36 Arachis hypogaea HOM05D005283 ORTHO05D006769 0.0e+00 1280.8 943 70.6
arahy.Tifrunner.gnm1.ann1.Z6JJZG Arachis hypogaea HOM05D005283 ORTHO05D006769 0.0e+00 1276.2 971 69.4
Lalb_Chr18g0051671 Lupinus albus HOM05D005283 ORTHO05D006769 0.0e+00 1265.8 913 71.0
QL06p009017 Quercus lobata HOM05D005283 ORTHO05D006769 0.0e+00 1196.4 919 68.0
Cfa015392 Carpinus fangiana HOM05D005283 ORTHO05D006769 0.0e+00 1184.9 954 66.7
Prupe.1G135400 Prunus persica HOM05D005283 ORTHO05D006769 0.0e+00 1184.9 953 66.1
Haze_01194 Corylus avellana HOM05D005283 ORTHO05D006769 0.0e+00 1175.6 960 65.9
MD13G1167900 Malus domestica HOM05D005283 ORTHO05D006769 0.0e+00 1175.2 953 65.4
MD08G1066800 Malus domestica HOM05D005283 ORTHO05D006769 0.0e+00 1166.4 953 64.7
Thecc.04G285400 Theobroma cacao HOM05D005283 ORTHO05D006769 0.0e+00 1164.8 956 64.9
RcHm_v2.0_Chr4g0422381 Rosa chinensis HOM05D005283 ORTHO05D006769 0.0e+00 1163.3 922 66.1
CSS0043341 Camellia sinensis var. sinensis HOM05D005283 ORTHO05D006769 0.0e+00 1154.0 953 64.8
FAN12G1245 Fragaria x ananassa HOM05D005283 ORTHO05D006769 0.0e+00 1150.2 927 64.7
FAN12G0573 Fragaria x ananassa HOM05D005283 ORTHO05D006769 0.0e+00 1149.4 927 64.8
TWI09G0775 Tripterygium wilfordii HOM05D005283 ORTHO05D006769 0.0e+00 1146.0 954 63.9
Potri.010G014000 Populus trichocarpa HOM05D005283 ORTHO05D006769 0.0e+00 1144.8 941 64.4
FvH4_4g18240 Fragaria vesca HOM05D005283 ORTHO05D006769 0.0e+00 1144.4 927 64.6
CiPaw.01G148000 Carya illinoinensis HOM05D005283 ORTHO05D006769 0.0e+00 1135.6 953 64.1
CANSAT78G0446 Cannabis sativa HOM05D005283 ORTHO05D006769 0.0e+00 1125.9 951 62.4
Ciclev10004285m.g Citrus clementina HOM05D005283 ORTHO05D006769 0.0e+00 1125.2 944 63.8
Nn3g21453 Nelumbo nucifera HOM05D005283 ORTHO05D006769 0.0e+00 1124.0 943 63.6
TWI53G1858 Tripterygium wilfordii HOM05D005283 ORTHO05D006769 0.0e+00 1118.6 954 63.2
Dinv29746 Davidia involucrata HOM05D005283 ORTHO05D006769 0.0e+00 1112.1 944 63.1
TAR362G0604 Trochodendron aralioides HOM05D005283 ORTHO05D006769 0.0e+00 1106.7 994 61.0
CsaV3_3G014700 Cucumis sativus L. HOM05D005283 ORTHO05D006769 0.0e+00 1106.3 927 63.2
Duzib151G1199 Durio zibethinus HOM05D005283 ORTHO05D006769 0.0e+00 1102.0 925 63.4
vmacro08159 Vaccinium macrocarpon HOM05D005283 ORTHO05D006769 0.0e+00 1098.2 975 61.2
MBI18_g13696_MAGBIO Magnolia biondii HOM05D005283 ORTHO05D006769 0.0e+00 1091.3 942 63.2
ClCG05G006140 Citrullus lanatus HOM05D005283 ORTHO05D006769 0.0e+00 1088.2 927 62.8
MELO3C006668.2 Cucumis melo HOM05D005283 ORTHO05D006769 6.6e-312 1074.7 955 61.4
Dinv44377 Davidia involucrata HOM05D005283 ORTHO05D006769 6.6e-312 1074.3 928 62.7
Sed0007600 Sechium edule HOM05D005283 ORTHO05D006769 2.5e-309 1065.4 944 60.8
Hma1.2p1_1185F.1_g265090 Hydrangea macrophylla HOM05D005283 ORTHO05D006769 4.2e-309 1064.7 943 61.7
Gohir.D02G054700 Gossypium hirsutum HOM05D005283 ORTHO05D006769 1.6e-308 1062.8 919 62.2
Gorai.005G060600 Gossypium raimondii HOM05D005283 ORTHO05D006769 2.7e-308 1062.0 919 62.1
PGR031G1610 Punica granatum HOM05D005283 ORTHO05D006769 4.7e-308 1061.2 957 61.5
Gohir.A02G049600 Gossypium hirsutum HOM05D005283 ORTHO05D006769 5.2e-307 1057.7 919 62.1
PSO170G5664 Papaver somniferum HOM05D005283 ORTHO05D006769 2.4e-304 1048.9 948 60.2
PSO210G5109 Papaver somniferum HOM05D005283 ORTHO05D006769 1.6e-303 1046.2 946 60.5
Aqoxy2G02976 Aquilegia oxysepala HOM05D005283 ORTHO05D006769 3.8e-302 1041.6 912 61.7
FAN17G2169 Fragaria x ananassa HOM05D005283 ORTHO05D006769 2.7e-300 1035.4 1019 56.3
Sabra10G0008900 Salix brachista HOM05D005283 ORTHO05D006769 6.7e-299 1030.8 864 63.2
Rhsim04G0223000 Rhododendron simsii HOM05D005283 ORTHO05D006769 1.5e-298 1029.6 1075 54.5
DCAR_027073 Daucus carota HOM05D005283 ORTHO05D006769 1.3e-297 1026.5 927 59.2
Nitab4.5_0001120g0020 Nicotiana tabacum HOM05D005283 ORTHO05D006769 3.7e-297 1025.0 926 60.3
CAN.G185.38 Capsicum annuum HOM05D005283 ORTHO05D006769 4.8e-297 1024.6 926 59.9
Atru.BG.90.p Acer truncatum HOM05D005283 ORTHO05D006769 1.3e-294 1016.5 911 60.6
Sopen01g032430 Solanum pennellii HOM05D005283 ORTHO05D006769 8.8e-291 1003.8 926 59.3
Peaxi162Scf01123g00233 Petunia axillaris HOM05D005283 ORTHO05D006769 8.3e-289 997.3 950 57.6
Solyc01g080620.3 Solanum lycopersicum HOM05D005283 ORTHO05D006769 1.8e-288 996.1 973 57.3
Cc03_g01850 Coffea canephora HOM05D005283 ORTHO05D006769 9.1e-288 993.8 975 56.6
Migut.G00154 Erythranthe guttata HOM05D005283 ORTHO05D006769 1.5e-285 986.5 960 57.1
Eucgr.B01324 Eucalyptus grandis HOM05D005283 ORTHO05D006769 4.2e-285 984.9 881 60.6
AUR62041505 Chenopodium quinoa HOM05D005283 ORTHO05D006769 7.2e-285 984.2 930 58.0
MSTRG.3910 Avicennia marina HOM05D005283 ORTHO05D006769 5.7e-282 974.5 975 55.7
Sc25g0004780 Simmondsia chinensis HOM05D005283 ORTHO05D006769 4.5e-279 964.9 931 57.4
Manes.03G195900 Manihot esculenta HOM05D005283 ORTHO05D006769 3.9e-278 961.8 886 59.7
EL10Ac3g06605 Beta vulgaris HOM05D005283 ORTHO05D006769 3.3e-277 958.7 912 57.5
HanXRQChr13g0411191 Helianthus annuus HOM05D005283 ORTHO05D006769 4.0e-275 951.8 948 55.4
THA.LOC104820270 Tarenaya hassleriana HOM05D005283 ORTHO05D006769 2.2e-273 946.0 916 56.8
Nitab4.5_0000059g0420 Nicotiana tabacum HOM05D005283 ORTHO05D006769 3.5e-271 938.7 936 56.2
Ah.13g074630 Amaranthus hybridus HOM05D005283 ORTHO05D006769 1.1e-267 927.2 933 56.3
ATR0796G268 Amborella trichopoda HOM05D005283 ORTHO05D006769 2.0e-266 922.9 947 55.8
Lsat_1_v5_gn_5_54040 Lactuca sativa HOM05D005283 ORTHO05D006769 8.3e-265 917.5 939 54.8
ECA240G0403 Erigeron canadensis HOM05D005283 ORTHO05D006769 3.5e-263 912.1 902 56.1
AT4G15840 Arabidopsis thaliana HOM05D005283 ORTHO05D006769 1.5e-258 896.7 912 55.4
Oeu029706.1 Olea europaea HOM05D005283 ORTHO05D000116 2.0e-258 896.3 943 54.0
Thhalv10024402m.g Eutrema salsugineum HOM05D005283 ORTHO05D006769 4.1e-256 888.6 911 54.7
Sp7g14240 Schrenkiella parvula HOM05D005283 ORTHO05D006769 4.1e-256 888.6 913 54.1
Carub.0007s2581 Capsella rubella HOM05D005283 ORTHO05D006769 2.1e-255 886.3 911 54.8
CARHR290370 Cardamine hirsuta HOM05D005283 ORTHO05D006769 1.7e-254 883.2 938 53.8
AL7G39450 Arabidopsis lyrata HOM05D005283 ORTHO05D006769 4.7e-252 875.2 920 53.9
C07p47430 Brassica napus HOM05D005283 ORTHO05D006769 1.8e-251 873.2 910 54.3
BolC7t45270H Brassica oleracea HOM05D005283 ORTHO05D006769 1.8e-251 873.2 910 54.3
BraA03t14037Z Brassica rapa HOM05D005283 ORTHO05D006769 5.8e-250 868.2 910 54.5
A03p49360 Brassica napus HOM05D005283 ORTHO05D006769 2.9e-249 865.9 910 54.6
BcaC06g32968 Brassica carinata HOM05D005283 ORTHO05D006769 3.2e-248 862.4 927 52.9
SGA_v2.0_scaffold18G08298 Striga asiatica HOM05D005283 ORTHO05D006769 2.7e-247 859.4 947 52.0
Zm00001eb142310 Zea mays HOM05D005283 ORTHO05D006769 2.5e-245 852.8 904 53.3
BcaC06g33444 Brassica carinata HOM05D005283 ORTHO05D006769 7.3e-245 851.3 910 53.0
Os01g0932600 Oryza sativa ssp. japonica HOM05D005283 ORTHO05D006769 4.8e-244 848.6 903 52.6
Hund20553 Selenicereus undatus HOM05D005283 ORTHO05D006769 5.4e-240 835.1 842 54.9
CDE05G1280 Ceratophyllum demersum HOM05D005283 ORTHO05D006769 9.3e-240 834.3 929 52.5
CDE11G0961 Ceratophyllum demersum HOM05D005283 ORTHO05D006769 7.6e-226 788.1 923 50.2
Zm00001eb363540 Zea mays HOM05D005283 ORTHO05D006769 5.3e-219 765.4 849 52.5
Hma1.2p1_2906F.1_g330120 Hydrangea macrophylla HOM05D005283 ORTHO05D006769 6.1e-207 725.3 854 51.3
COL.COLO4_13862 Corchorus olitorius HOM05D005283 ORTHO05D006769 3.6e-199 699.5 953 46.4
HPP92_002145 Vanilla planifolia HOM05D005283 ORTHO05D006769 3.5e-186 656.4 809 49.3
Pp3c5_16090 Physcomitrium patens HOM05D005283 ORTHO05D006769 2.2e-185 653.7 943 44.5
Pp3c6_10590 Physcomitrium patens HOM05D005283 ORTHO05D006769 3.0e-182 643.3 947 43.1
Actinidia40275 Actinidia chinensis HOM05D005283 ORTHO05D006769 5.0e-177 625.9 399 78.7
GSVIVG01017732001 Vitis vinifera HOM05D005283 ORTHO05D006769 2.3e-169 600.5 594 56.2
Cpa.g.sc66.36 Carica papaya HOM05D005283 ORTHO05D006769 3.5e-162 576.6 617 53.6
Pp3c16_9230 Physcomitrium patens HOM05D005283 ORTHO05D006769 1.9e-160 570.9 915 40.9
Atru.chr4.2851 Acer truncatum HOM05D005283 ORTHO05D006769 4.3e-160 569.7 369 77.2
Lj6A677G73 Lonicera japonica HOM05D005283 ORTHO05D006769 4.6e-154 549.7 409 68.9
Actinidia40274 Actinidia chinensis HOM05D005283 ORTHO05D006769 6.6e-129 466.1 508 52.8
Lj6C677T9 Lonicera japonica HOM05D005283 ORTHO05D006769 1.7e-124 451.4 535 50.1
TAR633G1039 Trochodendron aralioides HOM05D005283 ORTHO05D006769 1.0e-121 442.2 455 54.7
AUR62042850 Chenopodium quinoa HOM05D005283 ORTHO05D006769 2.3e-97 361.3 583 42.4
TAR633G2729 Trochodendron aralioides HOM05D005283 ORTHO05D006769 2.0e-93 348.2 275 65.5
unitig_748.g8731 Utricularia gibba HOM05D005283 ORTHO05D006769 3.8e-84 317.4 203 72.9
GSVIVG01017731001 Vitis vinifera HOM05D005283 ORTHO05D006769 8.5e-84 316.2 175 85.1
Pp3c20_17000 Physcomitrium patens HOM05D005283 ORTHO05D006769 1.3e-76 292.4 369 46.9
TAR633G1238 Trochodendron aralioides HOM05D005283 ORTHO05D006769 5.5e-75 287.0 151 88.7
SEGI_38162 Sequoiadendron giganteum HOM05D005283 ORTHO05D006769 3.6e-74 284.3 616 34.6
SEGI_40593 Sequoiadendron giganteum HOM05D005283 ORTHO05D006769 3.6e-74 284.3 616 34.6
unitig_748.g8730 Utricularia gibba HOM05D005283 ORTHO05D006769 1.0e-73 282.7 281 53.4
HPP92_002144 Vanilla planifolia HOM05D005283 ORTHO05D006769 9.8e-64 249.6 137 86.9
FAN07G0879 Fragaria x ananassa HOM05D005283 ORTHO05D006769 3.7e-63 247.7 145 83.4
PRCOL_00005501 Prasinoderma coloniale HOM05D005283 ORTHO05D006769 9.1e-62 243.0 918 26.6
SEGI_08317 Sequoiadendron giganteum HOM05D005283 ORTHO05D006769 8.0e-58 229.9 137 77.4
Actinidia26773 Actinidia chinensis HOM05D005283 ORTHO05D006769 6.8e-57 226.9 154 75.3
SEGI_24032 Sequoiadendron giganteum HOM05D005283 ORTHO05D006769 6.1e-50 203.8 117 77.8
SEGI_35628 Sequoiadendron giganteum HOM05D005283 ORTHO05D006769 4.6e-45 187.6 199 46.2
Mapoly0037s0064 Marchantia polymorpha HOM05D005283 ORTHO05D006769 5.2e-41 174.1 191 43.5
AUR62006322 Chenopodium quinoa HOM05D007078 ORTHO05D008745 1.9e-30 139.0 185 47.6
MCO04G464 Micromonas commoda HOM05D005283 ORTHO05D006769 6.6e-28 130.6 290 31.0
BolC4t27184H Brassica oleracea HOM05D005283 ORTHO05D006769 2.2e-23 115.5 129 46.5
A04p20740 Brassica napus HOM05D005283 ORTHO05D006769 6.4e-23 114.0 174 37.9
Cpa.g.sc66.37 Carica papaya HOM05D005283 ORTHO05D006769 9.2e-22 110.2 91 67.0
BcaC05g28381 Brassica carinata HOM05D005283 ORTHO05D021637 1.7e-15 89.4 58 69.0
VMungo1127G0889 Vigna mungo HOM05D005283 ORTHO05D006769 3.8e-15 88.2 53 75.5
C04p56580 Brassica napus HOM05D005283 ORTHO05D006769 7.1e-14 84.0 129 37.2
AUR62038887 Chenopodium quinoa HOM05D002461 ORTHO05D000898 3.5e-13 81.6 82 56.1
Cfa001632 Carpinus fangiana HOM05D005283 ORTHO05D006769 6.0e-13 80.9 204 28.4
AUR62005650 Chenopodium quinoa HOM05D002461 ORTHO05D000898 5.1e-12 77.8 121 44.6
AUR62033912 Chenopodium quinoa HOM05D002461 ORTHO05D000898 5.1e-12 77.8 121 44.6
AUR62010442 Chenopodium quinoa HOM05D002461 ORTHO05D000898 6.6e-12 77.4 55 72.7
AUR62029074 Chenopodium quinoa HOM05D002461 ORTHO05D000898 6.6e-12 77.4 55 72.7
AUR62031767 Chenopodium quinoa HOM05D002461 ORTHO05D000898 6.6e-12 77.4 55 72.7
AUR62035966 Chenopodium quinoa HOM05D002461 ORTHO05D000898 6.6e-12 77.4 55 72.7
HanXRQChr12g0372601 Helianthus annuus HOM05D005283 ORTHO05D006769 6.6e-12 77.4 63 61.9
HanXRQChr14g0449221 Helianthus annuus HOM05D005283 ORTHO05D006769 1.5e-11 76.3 66 57.6
AUR62011828 Chenopodium quinoa HOM05D002461 ORTHO05D000898 1.9e-11 75.9 101 48.5
AUR62024534 Chenopodium quinoa HOM05D002461 ORTHO05D000898 1.9e-11 75.9 101 48.5
AUR62024696 Chenopodium quinoa HOM05D002461 ORTHO05D000898 1.9e-11 75.9 101 48.5
AUR62035885 Chenopodium quinoa HOM05D002461 ORTHO05D000898 1.9e-11 75.9 101 48.5
AUR62002595 Chenopodium quinoa HOM05D002461 ORTHO05D000898 2.5e-11 75.5 101 48.5
BcaC02g08264 Brassica carinata HOM05D005283 ORTHO05D006769 2.1e-10 72.4 118 36.4
Cpa.g.c37401 Carica papaya HOM05D005283 ORTHO05D006769 9.0e-09 67.0 33 81.8


User provided reference genes

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