Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G31925 Trifolium pratense HOM05D006780 ORTHO05D008455 1.6e-127 459.5 249 100.0
Psat7g145160 Pisum sativum HOM05D006780 ORTHO05D008455 6.1e-111 404.4 251 82.5
Ca_19681_v3 Cicer arietinum L. HOM05D006780 ORTHO05D008455 6.3e-108 394.4 249 85.1
Medtr4g033475 Medicago truncatula HOM05D006780 ORTHO05D008455 1.8e-107 392.9 240 81.7
Lj3g0022672 Lotus japonicus HOM05D006780 ORTHO05D008455 1.7e-89 333.2 238 70.2
VMungo1127G1066 Vigna mungo HOM05D006780 ORTHO05D008455 4.4e-85 318.5 201 75.6
arahy.Tifrunner.gnm1.ann1.T2A0GP Arachis hypogaea HOM05D006780 ORTHO05D008455 3.3e-80 302.4 243 63.0
Manes.09G119100 Manihot esculenta HOM05D006780 ORTHO05D008455 7.3e-80 301.2 236 61.0
arahy.Tifrunner.gnm1.ann1.T66758 Arachis hypogaea HOM05D006780 ORTHO05D008455 1.6e-79 300.1 243 62.6
Gohir.A05G389500 Gossypium hirsutum HOM05D006780 ORTHO05D008455 1.6e-79 300.1 195 71.3
Phvul.011G002600 Phaseolus vulgaris HOM05D006780 ORTHO05D008455 2.8e-79 299.3 207 71.5
Gorai.012G029700 Gossypium raimondii HOM05D006780 ORTHO05D008455 1.4e-78 297.0 195 70.3
Sabra04G0017100 Salix brachista HOM05D006780 ORTHO05D008455 1.4e-78 297.0 203 68.5
Potri.004G030100 Populus trichocarpa HOM05D006780 ORTHO05D008455 3.1e-78 295.8 205 68.3
Glyma.12G002200 Glycine max HOM05D006780 ORTHO05D008455 5.2e-78 295.0 200 71.5
Gohir.D04G027000 Gossypium hirsutum HOM05D006780 ORTHO05D008455 5.2e-78 295.0 195 69.7
Glyma.09G234600 Glycine max HOM05D006780 ORTHO05D008455 1.5e-77 293.5 200 71.0
COL.COLO4_34143 Corchorus olitorius HOM05D006780 ORTHO05D008455 5.8e-77 291.6 194 69.1
QL09p026712 Quercus lobata HOM05D006780 ORTHO05D008455 7.6e-77 291.2 196 69.9
Gorai.004G260300 Gossypium raimondii HOM05D006780 ORTHO05D008455 3.8e-76 288.9 195 68.2
Thecc.05G208000 Theobroma cacao HOM05D006780 ORTHO05D008455 3.8e-76 288.9 194 68.0
Atru.chr12.2100 Acer truncatum HOM05D006780 ORTHO05D008455 4.9e-76 288.5 195 68.2
Sed0025589 Sechium edule HOM05D006780 ORTHO05D008455 6.4e-76 288.1 193 67.9
Gohir.1Z049572 Gossypium hirsutum HOM05D006780 ORTHO05D008455 1.9e-75 286.6 195 67.7
ClCG01G004850 Citrullus lanatus HOM05D006780 ORTHO05D008455 2.4e-75 286.2 193 67.4
Cfa013613 Carpinus fangiana HOM05D006780 ORTHO05D008455 3.2e-75 285.8 194 68.0
ECA233G5194 Erigeron canadensis HOM05D006780 ORTHO05D008455 5.4e-75 285.0 196 69.4
Eucgr.K00108 Eucalyptus grandis HOM05D006780 ORTHO05D008455 5.4e-75 285.0 199 66.3
CiPaw.07G182200 Carya illinoinensis HOM05D006780 ORTHO05D008455 1.2e-74 283.9 195 67.7
MELO3C005448.2 Cucumis melo HOM05D006780 ORTHO05D008455 2.7e-74 282.7 193 65.8
Gohir.A08G223700 Gossypium hirsutum HOM05D006780 ORTHO05D008455 2.7e-74 282.7 195 67.2
CSS0033689 Camellia sinensis var. sinensis HOM05D006780 ORTHO05D008455 3.5e-74 282.3 198 68.2
Nitab4.5_0007683g0020 Nicotiana tabacum HOM05D006780 ORTHO05D008455 3.5e-74 282.3 194 69.1
TWI60G0503 Tripterygium wilfordii HOM05D006780 ORTHO05D008455 3.5e-74 282.3 196 68.9
CsaV3_5G005070 Cucumis sativus L. HOM05D006780 ORTHO05D008455 1.3e-73 280.4 193 65.3
Nitab4.5_0000011g0110 Nicotiana tabacum HOM05D006780 ORTHO05D008455 1.3e-73 280.4 194 68.0
Nn6g33682 Nelumbo nucifera HOM05D006780 ORTHO05D008455 1.7e-73 280.0 194 67.5
RcHm_v2.0_Chr1g0383391 Rosa chinensis HOM05D006780 ORTHO05D008455 2.3e-73 279.6 196 68.9
HanXRQChr08g0225871 Helianthus annuus HOM05D006780 ORTHO05D008455 3.0e-73 279.3 195 68.2
Hma1.2p1_0115F.1_g055870 Hydrangea macrophylla HOM05D006780 ORTHO05D008455 3.9e-73 278.9 196 66.8
MD01G1232400 Malus domestica HOM05D006780 ORTHO05D008455 5.1e-73 278.5 203 65.0
Prupe.2G322900 Prunus persica HOM05D006780 ORTHO05D008455 5.1e-73 278.5 201 65.2
TWI34G0276 Tripterygium wilfordii HOM05D006780 ORTHO05D008455 1.9e-72 276.6 194 68.0
Actinidia08727 Actinidia chinensis HOM05D006780 ORTHO05D008455 2.5e-72 276.2 197 67.0
CiPaw.08G043400 Carya illinoinensis HOM05D006780 ORTHO05D008455 2.5e-72 276.2 192 66.7
Cc02_g00520 Coffea canephora HOM05D006780 ORTHO05D008455 2.5e-72 276.2 195 67.2
Lsat_1_v5_gn_8_3841 Lactuca sativa HOM05D006780 ORTHO05D008455 9.6e-72 274.2 197 67.0
Lj3A891T47 Lonicera japonica HOM05D006780 ORTHO05D008455 2.1e-71 273.1 198 64.6
Actinidia34294 Actinidia chinensis HOM05D006780 ORTHO05D008455 2.8e-71 272.7 195 65.6
CANSAT21G1469 Cannabis sativa HOM05D006780 ORTHO05D008455 3.6e-71 272.3 207 65.2
PGR142G1227 Punica granatum HOM05D006780 ORTHO05D008455 3.6e-71 272.3 196 63.8
Solyc07g005550.4 Solanum lycopersicum HOM05D006780 ORTHO05D008455 3.6e-71 272.3 194 66.0
Sopen07g001650 Solanum pennellii HOM05D006780 ORTHO05D008455 3.6e-71 272.3 194 66.0
Ciclev10012613m.g Citrus clementina HOM05D006780 ORTHO05D008455 4.7e-71 271.9 194 64.9
TAR636G2448 Trochodendron aralioides HOM05D006780 ORTHO05D008455 8.1e-71 271.2 196 65.8
MSTRG.17 Avicennia marina HOM05D006780 ORTHO05D008455 1.1e-70 270.8 194 64.9
Dinv29183 Davidia involucrata HOM05D006780 ORTHO05D008455 3.1e-70 269.2 198 65.2
SalBow2G3389 Salvia bowleyana HOM05D006780 ORTHO05D008455 3.1e-70 269.2 196 65.3
Hund14300 Selenicereus undatus HOM05D006780 ORTHO05D008455 3.1e-70 269.2 194 63.4
FvH4_7g33420 Fragaria vesca HOM05D006780 ORTHO05D008455 6.9e-70 268.1 196 66.8
THA.LOC104805709 Tarenaya hassleriana HOM05D006780 ORTHO05D008455 6.9e-70 268.1 198 66.2
FAN01G1241 Fragaria x ananassa HOM05D006780 ORTHO05D008455 9.0e-70 267.7 196 66.8
FAN10G0287 Fragaria x ananassa HOM05D006780 ORTHO05D008455 2.6e-69 266.2 196 66.3
FAN10G2247 Fragaria x ananassa HOM05D006780 ORTHO05D008455 2.6e-69 266.2 196 66.3
MD07G1304300 Malus domestica HOM05D006780 ORTHO05D008455 2.6e-69 266.2 202 64.4
Migut.F00963 Erythranthe guttata HOM05D006780 ORTHO05D008455 5.8e-69 265.0 196 64.8
FAN03G1919 Fragaria x ananassa HOM05D006780 ORTHO05D008455 7.6e-69 264.6 196 65.8
CAN.G160.70 Capsicum annuum HOM05D006780 ORTHO05D008455 1.3e-68 263.8 196 63.3
GSVIVG01024468001 Vitis vinifera HOM05D006780 ORTHO05D008455 2.2e-68 263.1 194 64.9
TAR629G2389 Trochodendron aralioides HOM05D006780 ORTHO05D008455 4.2e-67 258.8 196 61.2
Thhalv10022468m.g Eutrema salsugineum HOM05D006780 ORTHO05D008455 9.3e-67 257.7 206 63.1
Aa31LG2G2290 Aethionema arabicum HOM05D006780 ORTHO05D008455 1.2e-66 257.3 199 64.3
Sc07g0007970 Simmondsia chinensis HOM05D006780 ORTHO05D008455 1.6e-66 256.9 174 67.2
SGA_v2.0_scaffold165G38216 Striga asiatica HOM05D006780 ORTHO05D008455 3.5e-66 255.8 197 62.9
AT2G44870 Arabidopsis thaliana HOM05D006780 ORTHO05D008455 6.0e-66 255.0 203 62.6
vmacro06481 Vaccinium macrocarpon HOM05D006780 ORTHO05D008455 6.0e-66 255.0 233 56.2
AUR62010478 Chenopodium quinoa HOM05D006780 ORTHO05D008455 2.3e-65 253.1 194 61.3
Ah.12g058490 Amaranthus hybridus HOM05D006780 ORTHO05D008455 3.0e-65 252.7 198 59.6
vmacro10178 Vaccinium macrocarpon HOM05D006780 ORTHO05D008455 3.9e-65 252.3 235 54.0
AUR62030415 Chenopodium quinoa HOM05D006780 ORTHO05D008455 1.1e-64 250.8 194 60.8
Peaxi162Scf00542g00012 Petunia axillaris HOM05D006780 ORTHO05D008455 1.1e-64 250.8 201 61.7
Rhsim09G0211500 Rhododendron simsii HOM05D006780 ORTHO05D008455 1.9e-64 250.0 248 52.0
unitig_52.g16857 Utricularia gibba HOM05D006780 ORTHO05D008455 2.5e-64 249.6 194 61.3
BraA02t06361Z Brassica rapa HOM05D006780 ORTHO05D008455 5.6e-64 248.4 202 61.4
BcaC03g14678 Brassica carinata HOM05D006780 ORTHO05D008455 7.3e-64 248.1 202 61.4
A02p13050 Brassica napus HOM05D006780 ORTHO05D008455 7.3e-64 248.1 202 61.4
BolC2t08258H Brassica oleracea HOM05D006780 ORTHO05D008455 7.3e-64 248.1 202 61.4
Aqoxy3G02533 Aquilegia oxysepala HOM05D006780 ORTHO05D008455 6.2e-63 245.0 194 60.3
Hma1.2p1_0115F.1_g055860 Hydrangea macrophylla HOM05D006780 ORTHO05D008455 6.2e-63 245.0 196 62.2
AL2G19830 Arabidopsis lyrata HOM05D006780 ORTHO05D008455 8.1e-63 244.6 199 61.3
Sp5g19750 Schrenkiella parvula HOM05D006780 ORTHO05D008455 4.0e-62 242.3 202 60.9
C02p21190 Brassica napus HOM05D006780 ORTHO05D008455 5.3e-62 241.9 204 60.8
Rhsim03G0219000 Rhododendron simsii HOM05D006780 ORTHO05D008455 3.4e-61 239.2 228 52.2
BcaB05g24083 Brassica carinata HOM05D006780 ORTHO05D008455 5.8e-61 238.4 203 59.6
CDE02G2736 Ceratophyllum demersum HOM05D006780 ORTHO05D008455 2.9e-60 236.1 195 55.9
DCAR_008997 Daucus carota HOM05D006780 ORTHO05D008455 3.8e-60 235.7 193 59.1
Carub.0002s1056 Capsella rubella HOM05D006780 ORTHO05D008455 1.1e-59 234.2 200 58.5
PGSC0003DMG400011181 Solanum tuberosum HOM05D006780 ORTHO05D008455 1.4e-59 233.8 270 46.7
Dinv17273 Davidia involucrata HOM05D006780 ORTHO05D008455 7.1e-59 231.5 159 67.3
PSO063G3320 Papaver somniferum HOM05D006780 ORTHO05D008455 4.6e-58 228.8 197 57.4
PSO782G3414 Papaver somniferum HOM05D006780 ORTHO05D008455 4.6e-58 228.8 197 57.9
CDE02G3388 Ceratophyllum demersum HOM05D006780 ORTHO05D008455 1.8e-57 226.9 195 53.8
CDE11G0765 Ceratophyllum demersum HOM05D006780 ORTHO05D008455 3.3e-56 222.6 195 52.8
Zm00001eb024190 Zea mays HOM05D006780 ORTHO05D008455 3.3e-56 222.6 200 52.0
ATR0829G223 Amborella trichopoda HOM05D006780 ORTHO05D008455 5.6e-56 221.9 195 53.8
EL10Ac5g12581 Beta vulgaris HOM05D006780 ORTHO05D008455 1.3e-55 220.7 255 45.1
CARHR056600 Cardamine hirsuta HOM05D006780 ORTHO05D008455 1.5e-53 213.8 206 54.4
Duzib128G1164 Durio zibethinus HOM05D006780 ORTHO05D008455 1.6e-50 203.8 194 52.1
Duzib177G1050 Durio zibethinus HOM05D006780 ORTHO05D008455 6.2e-47 191.8 194 49.0
CDE11G0053 Ceratophyllum demersum HOM05D006780 ORTHO05D008455 8.2e-47 191.4 195 47.2
Pp3c8_4270 Physcomitrium patens HOM05D006780 ORTHO05D008455 1.1e-40 171.0 198 41.9
HPP92_025668 Vanilla planifolia HOM05D006780 ORTHO05D008455 8.2e-39 164.9 196 44.9
SMO301G0031 Selaginella moellendorffii HOM05D006780 ORTHO05D008455 2.6e-37 159.8 192 40.6
Mapoly0133s0055 Marchantia polymorpha HOM05D006780 ORTHO05D008455 1.8e-33 147.1 164 43.3
Cpa.g.sc39.45 Carica papaya HOM05D006780 ORTHO05D008455 7.9e-26 121.7 93 57.0
CBR_g642 Chara braunii HOM05D006780 ORTHO05D008455 2.4e-22 110.2 204 32.4
Os10g0569000 Oryza sativa ssp. japonica HOM05D006780 ORTHO05D008455 2.0e-13 80.5 84 45.2
CSS0031860 Camellia sinensis var. sinensis HOM05D001955 ORTHO05D001917 6.5e-12 75.5 66 56.1


User provided reference genes

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