Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G31924 Trifolium pratense HOM05D004101 ORTHO05D005221 0.0e+00 1428.7 727 100.0
Psat7g146680 Pisum sativum HOM05D004101 ORTHO05D005221 0.0e+00 1109.0 911 65.2
Medtr4g033490 Medicago truncatula HOM05D004101 ORTHO05D005221 0.0e+00 1101.7 930 64.2
Ca_19680_v3 Cicer arietinum L. HOM05D004101 ORTHO05D005221 6.0e-311 1070.5 917 63.4
Glyma.09G234500 Glycine max HOM05D004101 ORTHO05D005221 1.5e-279 966.1 919 57.3
Lj3g0009901 Lotus japonicus HOM05D004101 ORTHO05D005221 3.8e-278 961.4 923 57.3
Phvul.011G002700 Phaseolus vulgaris HOM05D004101 ORTHO05D005221 3.3e-274 948.3 923 56.2
VMungo1127G2207 Vigna mungo HOM05D004101 ORTHO05D005221 8.2e-273 943.7 921 56.1
Lalb_Chr16g0391261 Lupinus albus HOM05D004101 ORTHO05D005221 2.2e-270 935.6 901 57.2
arahy.Tifrunner.gnm1.ann1.BP0NKM Arachis hypogaea HOM05D004101 ORTHO05D005221 1.9e-261 906.0 931 54.6
arahy.Tifrunner.gnm1.ann1.FM3HJM Arachis hypogaea HOM05D004101 ORTHO05D005221 1.1e-256 890.2 634 71.6
QL09p002038 Quercus lobata HOM05D004101 ORTHO05D005221 1.4e-224 783.5 650 62.0
CiPaw.03G015400 Carya illinoinensis HOM05D004101 ORTHO05D005221 2.4e-224 782.7 937 48.2
Cfa008084 Carpinus fangiana HOM05D004101 ORTHO05D005221 3.5e-223 778.9 937 48.5
Atru.chr13.2487 Acer truncatum HOM05D004101 ORTHO05D005221 1.3e-222 776.9 638 64.1
Atru.chr13.2501 Acer truncatum HOM05D004101 ORTHO05D005221 1.3e-222 776.9 638 64.1
Thecc.08G177600 Theobroma cacao HOM05D004101 ORTHO05D005221 1.6e-220 770.0 936 47.1
Ciclev10018750m.g Citrus clementina HOM05D004101 ORTHO05D005221 1.2e-218 763.8 637 62.3
Duzib177G1024 Durio zibethinus HOM05D004101 ORTHO05D005221 1.7e-217 760.0 981 46.1
Gohir.A05G253700 Gossypium hirsutum HOM05D004101 ORTHO05D005221 3.7e-217 758.8 632 61.7
Gorai.009G267200 Gossypium raimondii HOM05D004101 ORTHO05D005221 6.4e-217 758.1 928 46.9
GSVIVG01036377001 Vitis vinifera HOM05D004101 ORTHO05D005221 1.0e-214 750.7 642 60.7
Dinv05108 Davidia involucrata HOM05D004101 ORTHO05D005221 1.5e-213 746.9 649 61.0
Gohir.A02G087700 Gossypium hirsutum HOM05D004101 ORTHO05D005221 2.8e-212 742.7 635 61.9
Gorai.005G116600 Gossypium raimondii HOM05D004101 ORTHO05D005221 4.7e-212 741.9 635 61.3
Potri.013G099700 Populus trichocarpa HOM05D004101 ORTHO05D005221 1.3e-209 733.8 917 46.7
Manes.18G117901 Manihot esculenta HOM05D004101 ORTHO05D005221 4.9e-209 731.9 951 46.5
Actinidia29382 Actinidia chinensis HOM05D004101 ORTHO05D005221 6.4e-209 731.5 645 60.2
Manes.02G221381 Manihot esculenta HOM05D004101 ORTHO05D005221 1.1e-208 730.7 921 48.2
Prupe.1G442600 Prunus persica HOM05D004101 ORTHO05D005221 1.9e-208 729.9 644 59.2
TAR383G0434 Trochodendron aralioides HOM05D004101 ORTHO05D005221 1.2e-207 727.2 657 59.4
CSS0023016 Camellia sinensis var. sinensis HOM05D004101 ORTHO05D005221 2.1e-207 726.5 648 59.3
RcHm_v2.0_Chr6g0306901 Rosa chinensis HOM05D004101 ORTHO05D005221 2.3e-206 723.0 634 59.9
Dinv36168 Davidia involucrata HOM05D004101 ORTHO05D005221 3.0e-206 722.6 648 59.1
TWI18G0503 Tripterygium wilfordii HOM05D004101 ORTHO05D005221 1.5e-205 720.3 626 61.7
Potri.019G072300 Populus trichocarpa HOM05D004101 ORTHO05D005221 7.3e-205 718.0 941 45.5
CSS0032109 Camellia sinensis var. sinensis HOM05D004101 ORTHO05D005221 1.2e-204 717.2 637 59.7
TAR625G0099 Trochodendron aralioides HOM05D004101 ORTHO05D005221 3.6e-204 715.7 659 58.4
Eucgr.F02954 Eucalyptus grandis HOM05D004101 ORTHO05D005221 1.1e-203 714.1 921 46.8
MD08G1108000 Malus domestica HOM05D004101 ORTHO05D005221 6.8e-203 711.4 636 60.5
MD15G1088500 Malus domestica HOM05D004101 ORTHO05D005221 6.8e-203 711.4 629 60.9
PGR042G3616 Punica granatum HOM05D004101 ORTHO05D005221 2.2e-201 706.4 937 45.5
Nn5g27278 Nelumbo nucifera HOM05D004101 ORTHO05D005221 2.9e-201 706.1 650 57.1
COL.COLO4_06914 Corchorus olitorius HOM05D004101 ORTHO05D005221 8.4e-201 704.5 622 59.3
Solyc01g008320.3 Solanum lycopersicum HOM05D004101 ORTHO05D005221 1.4e-200 703.7 633 57.8
CANSAT78G1092 Cannabis sativa HOM05D004101 ORTHO05D005221 1.9e-200 703.4 675 56.1
FvH4_2g35070 Fragaria vesca HOM05D004101 ORTHO05D005221 1.9e-200 703.4 643 58.6
MSTRG.12725 Avicennia marina HOM05D004101 ORTHO05D005221 6.0e-199 698.4 635 57.0
Lj9A698G58 Lonicera japonica HOM05D004101 ORTHO05D005221 2.3e-198 696.4 881 47.0
TWI12G0255 Tripterygium wilfordii HOM05D004101 ORTHO05D005221 3.0e-198 696.0 625 59.7
MELO3C008088.2 Cucumis melo HOM05D004101 ORTHO05D005221 8.7e-198 694.5 635 59.1
Sopen01g003840 Solanum pennellii HOM05D004101 ORTHO05D005221 1.5e-197 693.7 638 57.1
ClCG11G008940 Citrullus lanatus HOM05D004101 ORTHO05D005221 1.2e-196 690.6 937 44.6
CsaV3_2G033160 Cucumis sativus L. HOM05D004101 ORTHO05D005221 1.6e-196 690.3 635 58.3
Oeu028926.1 Olea europaea HOM05D004101 ORTHO05D005221 6.2e-196 688.3 625 57.8
Aa31LG2G14460 Aethionema arabicum HOM05D004101 ORTHO05D005221 6.9e-195 684.9 635 57.6
CANSAT21G1017 Cannabis sativa HOM05D004101 ORTHO05D005221 1.2e-194 684.1 603 59.4
Sed0018643 Sechium edule HOM05D004101 ORTHO05D005221 4.4e-194 682.2 620 58.4
Haze_13953 Corylus avellana HOM05D004101 ORTHO05D005221 5.8e-194 681.8 722 53.6
Sp1g27280 Schrenkiella parvula HOM05D004101 ORTHO05D005221 5.8e-194 681.8 650 57.4
FAN27G2707 Fragaria x ananassa HOM05D004101 ORTHO05D005221 2.2e-193 679.9 658 57.3
CARHR287040 Cardamine hirsuta HOM05D004101 ORTHO05D005221 2.9e-193 679.5 642 57.9
SGA_v2.0_scaffold120G33012 Striga asiatica HOM05D004101 ORTHO05D005221 2.9e-193 679.5 669 54.9
PSO017G3151 Papaver somniferum HOM05D004101 ORTHO05D005221 6.4e-193 678.3 651 56.4
Aqoxy2G02197 Aquilegia oxysepala HOM05D004101 ORTHO05D005221 1.9e-192 676.8 695 53.2
Aqoxy6G01398 Aquilegia oxysepala HOM05D004101 ORTHO05D005221 3.2e-192 676.0 695 53.1
Carub.0001s2990 Capsella rubella HOM05D004101 ORTHO05D005221 3.2e-192 676.0 647 56.0
Aqoxy6G00101 Aquilegia oxysepala HOM05D004101 ORTHO05D005221 9.3e-192 674.5 695 53.5
Migut.D00784 Erythranthe guttata HOM05D004101 ORTHO05D005221 2.1e-191 673.3 634 54.7
BcaB07g32808 Brassica carinata HOM05D004101 ORTHO05D005221 3.5e-191 672.5 650 56.2
SalBow2G0849 Salvia bowleyana HOM05D004101 ORTHO05D005221 6.0e-191 671.8 690 53.2
Aa31LG9G15840 Aethionema arabicum HOM05D004101 ORTHO05D005221 7.8e-191 671.4 631 57.2
BcaB04g18153 Brassica carinata HOM05D004101 ORTHO05D005221 2.3e-190 669.8 639 56.7
BcaC05g27176 Brassica carinata HOM05D004101 ORTHO05D005221 6.6e-190 668.3 641 56.5
BolC5t31805H Brassica oleracea HOM05D004101 ORTHO05D005221 6.6e-190 668.3 641 56.5
AT1G31480 Arabidopsis thaliana HOM05D004101 ORTHO05D005221 8.7e-190 667.9 649 56.2
C05p30730 Brassica napus HOM05D004101 ORTHO05D005221 8.7e-190 667.9 641 56.5
Thhalv10006721m.g Eutrema salsugineum HOM05D004101 ORTHO05D005221 8.7e-190 667.9 945 43.5
BraA09t39007Z Brassica rapa HOM05D004101 ORTHO05D005221 9.6e-189 664.5 633 57.0
AL1G49570 Arabidopsis lyrata HOM05D004101 ORTHO05D005221 2.1e-188 663.3 642 56.2
PSO170G4791 Papaver somniferum HOM05D004101 ORTHO05D005221 2.1e-188 663.3 621 56.8
BcaC07g37755 Brassica carinata HOM05D004101 ORTHO05D005221 4.8e-188 662.1 634 56.3
BolC8t48140H Brassica oleracea HOM05D004101 ORTHO05D005221 4.8e-188 662.1 634 56.3
EL10Ac1g01668 Beta vulgaris HOM05D004101 ORTHO05D005221 6.2e-188 661.8 656 54.3
BraA08t33053Z Brassica rapa HOM05D004101 ORTHO05D005221 6.2e-188 661.8 952 42.3
A08p10530 Brassica napus HOM05D004101 ORTHO05D005221 8.1e-188 661.4 953 42.6
SGA_v2.0_scaffold158G37476 Striga asiatica HOM05D004101 ORTHO05D005221 3.1e-187 659.4 654 53.8
Sabra13G0085500 Salix brachista HOM05D004101 ORTHO05D005221 3.4e-186 656.0 709 52.3
FAN20G0554 Fragaria x ananassa HOM05D004101 ORTHO05D005221 4.5e-186 655.6 635 56.9
Gohir.D02G102700 Gossypium hirsutum HOM05D004101 ORTHO05D005221 5.4e-184 648.7 571 60.9
CAN.G282.41 Capsicum annuum HOM05D004101 ORTHO05D005221 9.3e-184 647.9 673 52.5
HanXRQChr03g0062111 Helianthus annuus HOM05D004101 ORTHO05D005221 9.3e-184 647.9 624 55.9
Cc10_g08720 Coffea canephora HOM05D004101 ORTHO05D005221 7.9e-183 644.8 676 53.6
ECA240G3381 Erigeron canadensis HOM05D004101 ORTHO05D005221 1.0e-182 644.4 643 54.7
ATR1089G044 Amborella trichopoda HOM05D004101 ORTHO05D005221 1.3e-182 644.0 953 43.1
Atru.chr13.2489 Acer truncatum HOM05D004101 ORTHO05D005221 2.1e-180 636.7 632 57.0
Rhsim08G0116000 Rhododendron simsii HOM05D004101 ORTHO05D005221 3.7e-180 636.0 755 48.9
ECA234G0584 Erigeron canadensis HOM05D004101 ORTHO05D005221 1.4e-179 634.0 624 54.0
PSO017G5679 Papaver somniferum HOM05D004101 ORTHO05D005221 5.8e-178 628.6 610 56.2
Peaxi162Scf00021g02415 Petunia axillaris HOM05D004101 ORTHO05D005221 1.4e-176 624.0 922 42.3
PSO170G4509 Papaver somniferum HOM05D004101 ORTHO05D005221 2.5e-176 623.2 608 56.2
Sabra19G0083800 Salix brachista HOM05D004101 ORTHO05D005221 2.5e-176 623.2 687 51.2
HPP92_008596 Vanilla planifolia HOM05D004101 ORTHO05D005221 1.3e-174 617.5 655 54.2
Os08g0110700 Oryza sativa ssp. japonica HOM05D004101 ORTHO05D005221 1.5e-173 614.0 910 40.8
DCAR_019079 Daucus carota HOM05D004101 ORTHO05D005221 5.6e-173 612.1 765 45.5
Zm00001eb174090 Zea mays HOM05D004101 ORTHO05D005221 5.8e-170 602.1 654 50.2
Lsat_1_v5_gn_7_42860 Lactuca sativa HOM05D004101 ORTHO05D005221 4.6e-167 592.4 628 52.7
Nitab4.5_0009427g0010 Nicotiana tabacum HOM05D004101 ORTHO05D005221 4.6e-167 592.4 554 58.8
FAN15G3699 Fragaria x ananassa HOM05D004101 ORTHO05D005221 6.1e-167 592.0 875 42.7
Zm00001eb260480 Zea mays HOM05D004101 ORTHO05D005221 2.3e-166 590.1 634 50.9
Nitab4.5_0000069g0130 Nicotiana tabacum HOM05D004101 ORTHO05D005221 3.0e-166 589.7 548 59.1
AUR62022357 Chenopodium quinoa HOM05D004101 ORTHO05D005221 4.1e-155 552.7 906 39.7
AagrBONN_evm.TU.Sc2ySwM_228.4088 Anthoceros agrestis HOM05D004101 ORTHO05D005221 4.2e-152 542.7 620 49.2
Mapoly0151s0040 Marchantia polymorpha HOM05D004101 ORTHO05D005221 2.7e-151 540.0 649 46.7
AUR62034351 Chenopodium quinoa HOM05D004101 ORTHO05D005221 5.1e-150 535.8 586 52.4
Cpa.g.sc24.82 Carica papaya HOM05D004101 ORTHO05D005221 2.9e-145 520.0 470 61.5
Hund26650 Selenicereus undatus HOM05D004101 ORTHO05D005221 8.5e-145 518.5 867 39.6
Sc26g0002190 Simmondsia chinensis HOM05D004101 ORTHO05D005221 6.1e-143 512.3 521 54.9
Ah.07g205660 Amaranthus hybridus HOM05D004101 ORTHO05D005221 8.8e-142 508.4 717 44.2
SMO200G0043 Selaginella moellendorffii HOM05D004101 ORTHO05D005221 6.3e-140 502.3 574 48.4
Pp3c3_10170 Physcomitrium patens HOM05D004101 ORTHO05D005221 2.2e-137 493.8 809 38.9
unitig_8.g3682 Utricularia gibba HOM05D004101 ORTHO05D005221 2.3e-134 483.8 642 43.8
Lj2A387G43 Lonicera japonica HOM05D004101 ORTHO05D005221 3.0e-134 483.4 618 47.1
vmacro17836 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 1.8e-131 474.2 710 43.0
THA.LOC104812717 Tarenaya hassleriana HOM05D004101 ORTHO05D005221 2.4e-131 473.8 472 57.4
HPP92_008552 Vanilla planifolia HOM05D004101 ORTHO05D005221 5.7e-125 452.6 560 48.6
Gohir.D05G255660 Gossypium hirsutum HOM05D004101 ORTHO05D005221 4.2e-120 436.4 467 50.5
A09p34710 Brassica napus HOM05D004101 ORTHO05D005221 6.1e-119 432.6 463 53.8
Gohir.D05G255640 Gossypium hirsutum HOM05D004101 ORTHO05D005221 2.3e-110 404.1 684 39.6
Migut.N00699 Erythranthe guttata HOM05D004101 ORTHO05D005221 4.9e-100 369.8 274 62.8
CDE02G0702 Ceratophyllum demersum HOM05D004101 ORTHO05D005221 6.4e-92 342.8 417 49.6
Migut.N00698 Erythranthe guttata HOM05D004101 ORTHO05D005221 7.4e-56 223.0 118 89.8
CDE02G4445 Ceratophyllum demersum HOM05D004101 ORTHO05D005221 6.1e-50 203.4 208 51.0
vmacro14430 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 3.1e-46 191.0 139 61.9
QL93p1879_0034 Quercus lobata HOM05D004101 ORTHO05D005221 2.6e-45 188.0 126 69.8
CBR_g19663 Chara braunii HOM05D004101 ORTHO05D005221 3.6e-42 177.6 225 43.6
Aqoxy2G00645 Aquilegia oxysepala HOM05D004101 ORTHO05D005221 2.6e-37 161.4 119 65.5
vmacro14429 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 1.7e-31 142.1 285 40.0
PSO017G1167 Papaver somniferum HOM05D004101 ORTHO05D005221 7.7e-29 133.3 109 58.7
Lj2A387T50 Lonicera japonica HOM05D004101 ORTHO05D005221 1.8e-25 122.1 65 87.7
SEGI_18218 Sequoiadendron giganteum HOM05D004101 ORTHO05D005221 3.0e-25 121.3 65 87.7
vmacro14428 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 4.1e-22 110.9 65 80.0
vmacro17837 Vaccinium macrocarpon HOM05D004101 ORTHO05D005221 1.1e-19 102.8 93 59.1
Medtr5g080490 Medicago truncatula HOM05D004101 ORTHO05D005221 3.6e-18 97.8 68 75.0
Cpa.g.sc24.79 Carica papaya HOM05D004101 ORTHO05D005221 4.7e-18 97.4 66 69.7
SEGI_28351 Sequoiadendron giganteum HOM05D004101 ORTHO05D005221 2.3e-17 95.1 75 64.0
Cpa.g.sc24.85 Carica papaya HOM05D004101 ORTHO05D005221 8.8e-17 93.2 65 67.7
BcaB04g18154 Brassica carinata HOM05D004101 ORTHO05D005221 5.7e-16 90.5 70 62.9
A09p34730 Brassica napus HOM05D004101 ORTHO05D005221 1.1e-14 86.3 67 62.7
HPP92_008553 Vanilla planifolia HOM05D004101 ORTHO05D005221 2.0e-13 82.0 68 58.8
SMO200G0098 Selaginella moellendorffii HOM05D004101 ORTHO05D037556 1.0e-12 79.7 89 51.7
Oeu006618.1 Olea europaea HOM05D004101 ORTHO05D005221 1.9e-11 75.5 56 64.3
COL.COLO4_06915 Corchorus olitorius HOM05D004101 ORTHO05D005221 7.2e-11 73.6 42 83.3
Os07g0406600 Oryza sativa ssp. japonica HOM05D004101 ORTHO05D005221 1.8e-09 68.9 58 60.3
CDE08G1083 Ceratophyllum demersum HOM05D004101 ORTHO05D005221 2.3e-09 68.6 70 52.9
Lsat_1_v5_gn_5_98501 Lactuca sativa HOM05D004101 ORTHO05D007752 5.2e-09 67.4 70 48.6
SMO200G0135 Selaginella moellendorffii HOM05D004101 ORTHO05D037556 5.7e-08 63.9 62 53.2
VMungo0251G0072 Vigna mungo HOM05D004101 ORTHO05D005221 5.7e-08 63.9 35 77.1
SHI03798 Sapria himalayana HOM05D004101 ORTHO05D005221 1.4e-06 59.3 52 53.8
SMO209G0008 Selaginella moellendorffii HOM05D004101 ORTHO05D037556 4.1e-06 57.8 52 57.7


User provided reference genes

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