Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G31901 Trifolium pratense HOM05D004771 ORTHO05D005565 1.6e-101 372.9 203 100.0
Psat6g007560 Pisum sativum HOM05D004771 ORTHO05D005565 5.8e-59 231.5 210 70.5
Medtr1g009780 Medicago truncatula HOM05D004771 ORTHO05D005565 6.4e-58 228.0 205 68.3
TPR.G12006 Trifolium pratense HOM05D004771 ORTHO05D005565 6.4e-58 228.0 217 67.3
Ca_12871_v3 Cicer arietinum L. HOM05D004771 ORTHO05D005565 3.3e-54 215.7 186 69.4
Glyma.20G137100 Glycine max HOM05D004771 ORTHO05D005565 6.9e-52 208.0 213 64.3
Medtr3g080910 Medicago truncatula HOM05D004771 ORTHO05D005565 3.4e-51 205.7 152 77.6
Lj6g0021608 Lotus japonicus HOM05D004771 ORTHO05D005565 3.2e-49 199.1 213 61.5
arahy.Tifrunner.gnm1.ann1.DYSV1F Arachis hypogaea HOM05D004771 ORTHO05D005565 5.4e-49 198.4 212 60.8
arahy.Tifrunner.gnm1.ann1.8327BB Arachis hypogaea HOM05D004771 ORTHO05D005565 1.9e-46 189.9 211 60.2
Lalb_Chr02g0144821 Lupinus albus HOM05D004771 ORTHO05D005565 1.2e-43 180.6 210 57.1
VMungo0720G1115 Vigna mungo HOM05D004771 ORTHO05D005565 9.9e-43 177.6 176 64.8
Phvul.007G048400 Phaseolus vulgaris HOM05D004771 ORTHO05D005565 1.3e-42 177.2 211 58.3
Lj5g0002463 Lotus japonicus HOM05D004771 ORTHO05D005565 3.5e-40 169.1 156 63.5
MD10G1112800 Malus domestica HOM05D004771 ORTHO05D005565 9.0e-36 154.5 226 49.6
Ciclev10029331m.g Citrus clementina HOM05D004771 ORTHO05D005565 3.4e-35 152.5 207 49.8
arahy.Tifrunner.gnm1.ann1.ATP5C9 Arachis hypogaea HOM05D004771 ORTHO05D005565 1.7e-34 150.2 133 66.9
Ciclev10029295m.g Citrus clementina HOM05D004771 ORTHO05D005565 2.9e-34 149.4 207 49.8
QL11p028495 Quercus lobata HOM05D004771 ORTHO05D005565 1.1e-33 147.5 142 59.2
Duzib132G0558 Durio zibethinus HOM05D004771 ORTHO05D005565 2.1e-32 143.3 205 49.3
Cpa.g.c27001.4 Carica papaya HOM05D004771 ORTHO05D005565 4.6e-32 142.1 206 50.5
QL09p037751 Quercus lobata HOM05D004771 ORTHO05D005565 4.6e-32 142.1 208 48.6
Aqoxy5G00826 Aquilegia oxysepala HOM05D004771 ORTHO05D005565 6.0e-32 141.7 204 49.5
Thecc.02G032500 Theobroma cacao HOM05D004771 ORTHO05D005565 7.9e-32 141.4 205 48.8
AUR62038158 Chenopodium quinoa HOM05D004771 ORTHO05D005565 1.3e-31 140.6 143 58.7
MD05G1109000 Malus domestica HOM05D004771 ORTHO05D005565 1.8e-31 140.2 233 45.5
TWI23G0030 Tripterygium wilfordii HOM05D004771 ORTHO05D005565 1.8e-31 140.2 206 48.1
CSS0030116 Camellia sinensis var. sinensis HOM05D004771 ORTHO05D005565 2.3e-31 139.8 206 48.1
CANSAT56G2106 Cannabis sativa HOM05D004771 ORTHO05D005565 3.9e-31 139.0 149 57.7
CiPaw.05G182000 Carya illinoinensis HOM05D004771 ORTHO05D005565 3.9e-31 139.0 203 49.3
AUR62009845 Chenopodium quinoa HOM05D004771 ORTHO05D005565 3.9e-31 139.0 157 56.1
Aqoxy3G04244 Aquilegia oxysepala HOM05D004771 ORTHO05D005565 6.7e-31 138.3 202 48.5
GSVIVG01022390001 Vitis vinifera HOM05D004771 ORTHO05D005565 8.7e-31 137.9 216 49.1
Aqoxy3G02687 Aquilegia oxysepala HOM05D004771 ORTHO05D005565 1.5e-30 137.1 202 48.0
Aqoxy3G02689_Aqoxy3G02690 Aquilegia oxysepala HOM05D001377 ORTHO05D005565 1.5e-30 137.1 201 49.3
Potri.015G035700 Populus trichocarpa HOM05D004771 ORTHO05D005565 1.5e-30 137.1 140 56.4
GSVIVG01037017001 Vitis vinifera HOM05D004771 ORTHO05D005565 1.5e-30 137.1 211 48.8
CSS0010443 Camellia sinensis var. sinensis HOM05D004771 ORTHO05D005565 1.9e-30 136.7 207 47.3
Haze_10334 Corylus avellana HOM05D004771 ORTHO05D005565 4.3e-30 135.6 149 57.7
TAR628G1069 Trochodendron aralioides HOM05D004771 ORTHO05D005565 5.7e-30 135.2 138 59.4
Actinidia33010 Actinidia chinensis HOM05D004771 ORTHO05D005565 1.6e-29 133.7 209 48.3
COL.COLO4_17806 Corchorus olitorius HOM05D004771 ORTHO05D005565 2.1e-29 133.3 211 46.9
Dinv22681 Davidia involucrata HOM05D004771 ORTHO05D005565 2.8e-29 132.9 123 60.2
Manes.10G087700 Manihot esculenta HOM05D004771 ORTHO05D005565 2.8e-29 132.9 211 46.4
Dinv44219 Davidia involucrata HOM05D000703 ORTHO05D000633 4.8e-29 132.1 139 56.1
Lj8C288T1 Lonicera japonica HOM05D004771 ORTHO05D005565 4.8e-29 132.1 139 55.4
Cfa004725 Carpinus fangiana HOM05D004771 ORTHO05D005565 6.3e-29 131.7 214 48.1
Lj8P345T14 Lonicera japonica HOM05D004771 ORTHO05D005565 6.3e-29 131.7 155 52.9
PGR142G3141 Punica granatum HOM05D004771 ORTHO05D005565 1.1e-28 131.0 208 46.2
PGSC0003DMG400028994 Solanum tuberosum HOM05D004771 ORTHO05D005565 1.1e-28 131.0 203 45.8
MSTRG.6635 Avicennia marina HOM05D004771 ORTHO05D005565 1.8e-28 130.2 207 45.4
Gohir.D01G171700 Gossypium hirsutum HOM05D004771 ORTHO05D005565 1.8e-28 130.2 209 47.4
PSO170G1452 Papaver somniferum HOM05D004771 ORTHO05D005565 2.4e-28 129.8 144 54.2
Aa31LG2G7800 Aethionema arabicum HOM05D004771 ORTHO05D005565 4.1e-28 129.0 136 60.3
EL10Ac7g16361 Beta vulgaris HOM05D004771 ORTHO05D005565 4.1e-28 129.0 137 58.4
ClCG10G002170 Citrullus lanatus HOM05D004771 ORTHO05D005565 4.1e-28 129.0 208 46.2
Gorai.002G213200 Gossypium raimondii HOM05D004771 ORTHO05D005565 4.1e-28 129.0 205 46.8
MBI13_g09224_MAGBIO Magnolia biondii HOM05D004771 ORTHO05D005565 5.3e-28 128.6 205 43.9
COL.COLO4_26627 Corchorus olitorius HOM05D004771 ORTHO05D005565 6.9e-28 128.3 132 56.8
Eucgr.C02425 Eucalyptus grandis HOM05D004771 ORTHO05D005565 1.5e-27 127.1 220 43.2
FvH4_2g02960 Fragaria vesca HOM05D004771 ORTHO05D005565 1.5e-27 127.1 205 45.4
PSO017G4159 Papaver somniferum HOM05D004771 ORTHO05D005565 1.5e-27 127.1 134 55.2
RcHm_v2.0_Chr6g0247751 Rosa chinensis HOM05D004771 ORTHO05D005565 1.5e-27 127.1 201 45.8
FAN24G0749 Fragaria x ananassa HOM05D004771 ORTHO05D005565 2.0e-27 126.7 205 44.9
Prupe.8G152600 Prunus persica HOM05D004771 ORTHO05D005565 2.0e-27 126.7 207 46.9
arahy.Tifrunner.gnm1.ann1.S1TJ9S Arachis hypogaea HOM05D004771 ORTHO05D005565 3.4e-27 125.9 128 60.2
Glyma.10G254400 Glycine max HOM05D004771 ORTHO05D005565 7.6e-27 124.8 213 49.3
Nn2g15843 Nelumbo nucifera HOM05D004771 ORTHO05D005565 1.0e-26 124.4 205 44.9
Nitab4.5_0000575g0030 Nicotiana tabacum HOM05D004771 ORTHO05D005565 1.0e-26 124.4 198 46.5
MELO3C013897.2 Cucumis melo HOM05D004771 ORTHO05D005565 1.3e-26 124.0 139 52.5
Sed0002941 Sechium edule HOM05D004771 ORTHO05D005565 1.3e-26 124.0 210 44.8
THA.LOC104816989 Tarenaya hassleriana HOM05D004771 ORTHO05D005565 1.3e-26 124.0 140 54.3
Migut.M00048 Erythranthe guttata HOM05D004771 ORTHO05D005565 1.7e-26 123.6 204 46.1
Sc12g0010390 Simmondsia chinensis HOM05D004771 ORTHO05D005565 2.2e-26 123.2 184 48.4
TAR625G0649 Trochodendron aralioides HOM05D004771 ORTHO05D005565 2.2e-26 123.2 140 54.3
CsaV3_3G002260 Cucumis sativus L. HOM05D004771 ORTHO05D005565 2.9e-26 122.9 146 51.4
Eucgr.I02508 Eucalyptus grandis HOM05D004771 ORTHO05D005565 2.9e-26 122.9 206 42.7
ATR0736G167 Amborella trichopoda HOM05D004771 ORTHO05D005565 3.8e-26 122.5 133 52.6
Nitab4.5_0002078g0010 Nicotiana tabacum HOM05D004771 ORTHO05D005565 3.8e-26 122.5 133 51.9
TWI14G0977 Tripterygium wilfordii HOM05D004771 ORTHO05D005565 5.0e-26 122.1 126 58.7
Haze_04594 Corylus avellana HOM05D000399 ORTHO05D000304 8.4e-26 121.3 231 45.5
CAN.G490.38 Capsicum annuum HOM05D004771 ORTHO05D005565 1.9e-25 120.2 203 43.3
Peaxi162Scf00170g00041 Petunia axillaris HOM05D004771 ORTHO05D005565 2.5e-25 119.8 203 42.4
Nn4g25002 Nelumbo nucifera HOM05D004771 ORTHO05D005565 3.2e-25 119.4 201 41.3
Atru.chr4.2044 Acer truncatum HOM05D004771 ORTHO05D005565 4.2e-25 119.0 206 45.1
Gohir.A01G180600 Gossypium hirsutum HOM05D004771 ORTHO05D005565 4.2e-25 119.0 214 45.3
Cc00_g19310 Coffea canephora HOM05D004771 ORTHO05D005565 7.2e-25 118.2 207 44.4
unitig_899.g15063 Utricularia gibba HOM05D004771 ORTHO05D005565 9.3e-25 117.9 209 42.1
CANSAT25G2974 Cannabis sativa HOM05D004771 ORTHO05D005565 1.2e-24 117.5 207 43.5
PSO170G1616 Papaver somniferum HOM05D004771 ORTHO05D005565 1.2e-24 117.5 204 43.6
CANSAT25G0049 Cannabis sativa HOM05D004771 ORTHO05D005565 2.1e-24 116.7 206 42.7
Lsat_1_v5_gn_1_71561 Lactuca sativa HOM05D007128 ORTHO05D009059 2.1e-24 116.7 101 66.3
CDE05G2657 Ceratophyllum demersum HOM05D004771 ORTHO05D005565 3.5e-24 115.9 197 40.1
CAN.G630.7 Capsicum annuum HOM05D004771 ORTHO05D005565 6.1e-24 115.2 203 41.4
arahy.Tifrunner.gnm1.ann1.P0FJQ9 Arachis hypogaea HOM05D004771 ORTHO05D005565 7.9e-24 114.8 120 58.3
Thhalv10019781m.g Eutrema salsugineum HOM05D004771 ORTHO05D005565 7.9e-24 114.8 126 54.0
DCAR_027620 Daucus carota HOM05D004771 ORTHO05D005565 1.8e-23 113.6 217 41.9
Cc02_g28780 Coffea canephora HOM05D004771 ORTHO05D005565 3.9e-23 112.5 86 70.9
DCAR_007735 Daucus carota HOM05D004771 ORTHO05D005565 3.9e-23 112.5 149 48.3
Hund20829 Selenicereus undatus HOM05D004771 ORTHO05D005565 3.9e-23 112.5 204 41.7
CDE02G0226 Ceratophyllum demersum HOM05D004771 ORTHO05D005565 5.1e-23 112.1 124 51.6
AL2G31090 Arabidopsis lyrata HOM05D004771 ORTHO05D005565 6.7e-23 111.7 129 59.7
ECA248G2169 Erigeron canadensis HOM05D004771 ORTHO05D005565 8.7e-23 111.3 211 45.5
PSO528G0234 Papaver somniferum HOM05D004771 ORTHO05D005565 1.1e-22 110.9 204 41.7
AT1G71430 Arabidopsis thaliana HOM05D004771 ORTHO05D005565 1.9e-22 110.2 129 58.9
Sopen04g019850 Solanum pennellii HOM05D004771 ORTHO05D005565 2.5e-22 109.8 208 42.8
arahy.Tifrunner.gnm1.ann1.MQV2C0 Arachis hypogaea HOM05D004771 ORTHO05D005565 4.3e-22 109.0 124 55.6
Solyc04g049660.3 Solanum lycopersicum HOM05D004771 ORTHO05D005565 7.4e-22 108.2 208 41.8
SGA_v2.0_scaffold181G39690 Striga asiatica HOM05D004771 ORTHO05D005565 3.7e-21 105.9 119 52.9
HanXRQChr05g0160091 Helianthus annuus HOM05D004771 ORTHO05D005565 1.1e-20 104.4 164 48.8
Carub.0002s1828 Capsella rubella HOM05D004771 ORTHO05D005565 1.8e-20 103.6 207 44.4
BraA07t31335Z Brassica rapa HOM05D004771 ORTHO05D005565 3.1e-20 102.8 121 54.5
C06p45590 Brassica napus HOM05D004771 ORTHO05D005565 4.1e-20 102.4 122 55.7
BolC6t39610H Brassica oleracea HOM05D004771 ORTHO05D005565 4.1e-20 102.4 122 55.7
BcaB05g24668 Brassica carinata HOM05D004771 ORTHO05D005565 5.3e-20 102.1 121 55.4
BcaC03g15291 Brassica carinata HOM05D004771 ORTHO05D005565 5.3e-20 102.1 149 50.3
C02p28980 Brassica napus HOM05D004771 ORTHO05D005565 5.3e-20 102.1 149 50.3
BolC2t08948H Brassica oleracea HOM05D004771 ORTHO05D005565 5.3e-20 102.1 120 55.0
AUR62017723 Chenopodium quinoa HOM05D004771 ORTHO05D005565 5.3e-20 102.1 72 73.6
vmacro05477 Vaccinium macrocarpon HOM05D004771 ORTHO05D005565 5.3e-20 102.1 154 49.4
Sed0006388 Sechium edule HOM05D004771 ORTHO05D005565 9.0e-20 101.3 81 67.9
PGSC0003DMG400005017 Solanum tuberosum HOM05D004771 ORTHO05D005565 9.0e-20 101.3 203 41.4
BcaC02g09527 Brassica carinata HOM05D004771 ORTHO05D005565 1.5e-19 100.5 141 46.8
C04p43760 Brassica napus HOM05D004771 ORTHO05D005565 1.5e-19 100.5 141 46.8
BolC4t25958H Brassica oleracea HOM05D004771 ORTHO05D005565 1.5e-19 100.5 141 46.8
BraA02t06780Z Brassica rapa HOM05D004771 ORTHO05D005565 1.5e-19 100.5 162 48.8
RhsimUnG0159200 Rhododendron simsii HOM05D004771 ORTHO05D005565 2.0e-19 100.1 213 40.8
CARHR291250 Cardamine hirsuta HOM05D004771 ORTHO05D005565 2.6e-19 99.8 133 50.4
A02p17330 Brassica napus HOM05D004771 ORTHO05D005565 4.5e-19 99.0 161 47.2
Sp5g26590 Schrenkiella parvula HOM05D004771 ORTHO05D005565 5.9e-19 98.6 124 53.2
SEGI_32093 Sequoiadendron giganteum HOM05D004771 ORTHO05D005565 5.9e-19 98.6 164 44.5
A07p37720 Brassica napus HOM05D004771 ORTHO05D005565 7.7e-19 98.2 124 54.8
Os01g0617800 Oryza sativa ssp. japonica HOM05D004771 ORTHO05D005565 1.7e-18 97.1 199 40.7
Manes.07G051000 Manihot esculenta HOM05D004771 ORTHO05D005565 2.9e-18 96.3 147 46.9
Zm00001eb002910 Zea mays HOM05D004771 ORTHO05D005565 2.7e-16 89.7 203 39.4
Zm00001eb003040 Zea mays HOM05D004771 ORTHO05D005565 2.7e-16 89.7 203 39.4
Gohir.D01G171500 Gossypium hirsutum HOM05D004771 ORTHO05D005565 3.6e-16 89.4 63 74.6
Oeu012349.1 Olea europaea HOM05D004771 ORTHO05D005565 4.6e-16 89.0 60 78.3
HanXRQChr11g0345411 Helianthus annuus HOM05D004771 ORTHO05D005565 6.1e-16 88.6 184 38.6
HPP92_002219 Vanilla planifolia HOM05D006274 ORTHO05D007782 1.0e-15 87.8 172 42.4
Zm00001eb159770 Zea mays HOM05D004771 ORTHO05D005565 1.4e-15 87.4 205 39.0
Rhsim09G0033000 Rhododendron simsii HOM05D004771 ORTHO05D005565 5.7e-14 82.0 131 47.3
vmacro00584 Vaccinium macrocarpon HOM05D004771 ORTHO05D005565 3.1e-12 76.3 140 45.7
Nitab4.5_0001458g0040 Nicotiana tabacum HOM05D004771 ORTHO05D005565 2.0e-11 73.6 88 53.4
SalBow7G1175 Salvia bowleyana HOM05D004771 ORTHO05D005565 2.6e-11 73.2 155 36.1
Rhsim02G0173400 Rhododendron simsii HOM05D004771 ORTHO05D005565 1.7e-10 70.5 46 76.1
CARHR045930 Cardamine hirsuta HOM05D004771 ORTHO05D005565 2.9e-10 69.7 98 45.9
Lj9C712T7 Lonicera japonica HOM05D003887 ORTHO05D004523 2.9e-10 69.7 53 69.8
Mapoly0060s0029 Marchantia polymorpha HOM05D004771 ORTHO05D005565 5.0e-10 68.9 148 37.8
Pp3c4_10090 Physcomitrium patens HOM05D004771 ORTHO05D005565 6.5e-10 68.6 153 37.9
SMO244G0085 Selaginella moellendorffii HOM05D004771 ORTHO05D005565 3.3e-06 56.2 93 41.9


User provided reference genes

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