Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G31876 Trifolium pratense HOM05D004556 ORTHO05D005298 2.1e-70 268.9 133 100.0
Ca_09410_v3 Cicer arietinum L. HOM05D004556 ORTHO05D005298 8.8e-24 114.0 86 69.8
TPR.G6984 Trifolium pratense HOM05D004556 ORTHO05D005298 8.8e-24 114.0 86 69.8
Psat3g008080 Pisum sativum HOM05D004556 ORTHO05D005298 2.6e-23 112.5 86 68.6
Duzib177G0375 Durio zibethinus HOM05D004556 ORTHO05D005298 2.2e-22 109.4 86 67.4
Duzib106G0883 Durio zibethinus HOM05D004556 ORTHO05D005298 2.8e-22 109.0 86 66.3
Lalb_Chr15g0076861 Lupinus albus HOM05D004556 ORTHO05D005298 3.7e-22 108.6 86 66.3
Dinv00306 Davidia involucrata HOM05D004556 ORTHO05D005298 4.8e-22 108.2 86 66.3
Medtr7g114810 Medicago truncatula HOM05D004556 ORTHO05D005298 6.3e-22 107.8 86 66.3
arahy.Tifrunner.gnm1.ann1.ZA55QJ Arachis hypogaea HOM05D004556 ORTHO05D005298 1.1e-21 107.1 86 65.1
TAR362G0361 Trochodendron aralioides HOM05D004556 ORTHO05D005298 1.1e-21 107.1 86 65.1
Duzib128G0953 Durio zibethinus HOM05D004556 ORTHO05D005298 1.4e-21 106.7 86 65.1
Gorai.007G284100 Gossypium raimondii HOM05D004556 ORTHO05D005298 1.4e-21 106.7 97 61.9
CSS0028825 Camellia sinensis var. sinensis HOM05D004556 ORTHO05D005298 1.8e-21 106.3 86 65.1
Prupe.6G340800 Prunus persica HOM05D004556 ORTHO05D005298 1.8e-21 106.3 86 65.1
arahy.Tifrunner.gnm1.ann1.SCJ0TV Arachis hypogaea HOM05D004556 ORTHO05D005298 2.4e-21 105.9 86 64.0
QL03p024856 Quercus lobata HOM05D004556 ORTHO05D005298 3.1e-21 105.5 86 65.1
GSVIVG01021835001 Vitis vinifera HOM05D004556 ORTHO05D005298 3.1e-21 105.5 86 62.8
Cpa.g.sc117.71 Carica papaya HOM05D004556 ORTHO05D005298 4.1e-21 105.1 86 64.0
COL.COLO4_15298 Corchorus olitorius HOM05D004556 ORTHO05D005298 4.1e-21 105.1 86 65.1
Haze_04338 Corylus avellana HOM05D004556 ORTHO05D005298 4.1e-21 105.1 77 71.4
Dinv17770 Davidia involucrata HOM05D004556 ORTHO05D005298 4.1e-21 105.1 86 65.1
Gohir.D11G264100 Gossypium hirsutum HOM05D004556 ORTHO05D005298 5.4e-21 104.8 97 60.8
Lalb_Chr18g0045051 Lupinus albus HOM05D004556 ORTHO05D005298 5.4e-21 104.8 86 65.1
Thecc.05G287400 Theobroma cacao HOM05D004556 ORTHO05D005298 5.4e-21 104.8 86 66.3
Sabra05G0045300 Salix brachista HOM05D004556 ORTHO05D005298 1.2e-20 103.6 86 62.8
Dinv11531 Davidia involucrata HOM05D004556 ORTHO05D005298 1.6e-20 103.2 86 65.1
Potri.005G051300 Populus trichocarpa HOM05D004556 ORTHO05D005298 1.6e-20 103.2 86 62.8
unitig_0.g2302 Utricularia gibba HOM05D004556 ORTHO05D005298 1.6e-20 103.2 86 64.0
Gohir.D08G231400 Gossypium hirsutum HOM05D004556 ORTHO05D005298 2.0e-20 102.8 86 65.1
Gorai.004G245800 Gossypium raimondii HOM05D004556 ORTHO05D005298 2.0e-20 102.8 86 65.1
Glyma.19G243300 Glycine max HOM05D004556 ORTHO05D005298 2.7e-20 102.4 86 62.8
MD12G1237600 Malus domestica HOM05D004556 ORTHO05D005298 2.7e-20 102.4 86 62.8
TWI12G0865 Tripterygium wilfordii HOM05D004556 ORTHO05D005298 2.7e-20 102.4 86 64.0
TAR365G0624 Trochodendron aralioides HOM05D004556 ORTHO05D005298 2.7e-20 102.4 86 62.8
VMungo0540G1874 Vigna mungo HOM05D004556 ORTHO05D005298 2.7e-20 102.4 82 65.9
Glyma.03G245800 Glycine max HOM05D004556 ORTHO05D005298 3.5e-20 102.1 86 62.8
SalBow4G2463 Salvia bowleyana HOM05D004556 ORTHO05D005298 3.5e-20 102.1 86 62.8
SalBow4G3027 Salvia bowleyana HOM05D004556 ORTHO05D005298 3.5e-20 102.1 86 62.8
MSTRG.5093 Avicennia marina HOM05D004556 ORTHO05D005298 5.9e-20 101.3 86 62.8
HanXRQChr08g0230031 Helianthus annuus HOM05D004556 ORTHO05D005298 5.9e-20 101.3 86 61.6
Lj9C665G12 Lonicera japonica HOM05D004556 ORTHO05D005298 5.9e-20 101.3 86 61.6
ECA232G2012 Erigeron canadensis HOM05D004556 ORTHO05D005298 7.7e-20 100.9 86 60.5
FvH4_6g03340 Fragaria vesca HOM05D004556 ORTHO05D005298 7.7e-20 100.9 86 62.8
FAN05G0551 Fragaria x ananassa HOM05D004556 ORTHO05D005298 7.7e-20 100.9 86 62.8
FAN05G3160 Fragaria x ananassa HOM05D004556 ORTHO05D005298 7.7e-20 100.9 86 62.8
Lsat_1_v5_gn_1_96700 Lactuca sativa HOM05D004556 ORTHO05D005298 7.7e-20 100.9 86 61.6
Phvul.006G100100 Phaseolus vulgaris HOM05D004556 ORTHO05D005298 7.7e-20 100.9 82 64.6
RcHm_v2.0_Chr3g0451841 Rosa chinensis HOM05D004556 ORTHO05D005298 7.7e-20 100.9 86 62.8
TAR636G2079 Trochodendron aralioides HOM05D001851 ORTHO05D002237 7.7e-20 100.9 86 61.6
Gohir.A08G214400 Gossypium hirsutum HOM05D004556 ORTHO05D005298 1.0e-19 100.5 86 64.0
MBI11_g10323_MAGBIO Magnolia biondii HOM05D004556 ORTHO05D005298 1.0e-19 100.5 86 62.8
Manes.08G132100 Manihot esculenta HOM05D004556 ORTHO05D005298 1.3e-19 100.1 86 64.0
Sabra13G0036200 Salix brachista HOM05D004556 ORTHO05D005298 1.3e-19 100.1 86 62.8
THA.LOC104821680 Tarenaya hassleriana HOM05D004556 ORTHO05D005298 1.3e-19 100.1 86 62.8
ClCG02G016480 Citrullus lanatus HOM05D004556 ORTHO05D005298 1.7e-19 99.8 86 59.3
MELO3C004366.2 Cucumis melo HOM05D004556 ORTHO05D005298 1.7e-19 99.8 86 59.3
CsaV3_2G004290 Cucumis sativus L. HOM05D004556 ORTHO05D005298 1.7e-19 99.8 86 59.3
Hma1.2p1_0083F.1_g042880 Hydrangea macrophylla HOM05D004556 ORTHO05D005298 1.7e-19 99.8 77 68.8
Nn1g02409 Nelumbo nucifera HOM05D004556 ORTHO05D005298 1.7e-19 99.8 86 64.0
Lj1g0006589 Lotus japonicus HOM05D004556 ORTHO05D005298 2.3e-19 99.4 86 62.8
Oeu045907.1 Olea europaea HOM05D004556 ORTHO05D005298 3.8e-19 98.6 82 65.9
THA.LOC104818641 Tarenaya hassleriana HOM05D004556 ORTHO05D005298 3.8e-19 98.6 86 62.8
Lj9C668G11 Lonicera japonica HOM05D004556 ORTHO05D005298 5.0e-19 98.2 84 61.9
MD04G1221600 Malus domestica HOM05D004556 ORTHO05D005298 5.0e-19 98.2 86 62.8
SGA_v2.0_scaffold196G40974 Striga asiatica HOM05D004556 ORTHO05D005298 5.0e-19 98.2 86 59.3
CANSAT54G0892 Cannabis sativa HOM05D004556 ORTHO05D005298 6.6e-19 97.8 86 59.3
TWI56G0949 Tripterygium wilfordii HOM05D004556 ORTHO05D005298 6.6e-19 97.8 86 61.6
ATR0665G084 Amborella trichopoda HOM05D004556 ORTHO05D005298 8.6e-19 97.4 86 59.3
CiPaw.07G064700 Carya illinoinensis HOM05D004556 ORTHO05D005298 8.6e-19 97.4 86 60.5
Actinidia05768 Actinidia chinensis HOM05D004556 ORTHO05D005298 1.1e-18 97.1 86 61.6
Ciclev10001991m.g Citrus clementina HOM05D004556 ORTHO05D005298 1.9e-18 96.3 86 60.5
FAN02G1055 Fragaria x ananassa HOM05D004556 ORTHO05D005298 2.5e-18 95.9 86 61.6
FAN14G0561 Fragaria x ananassa HOM05D004556 ORTHO05D005298 2.5e-18 95.9 86 61.6
Manes.09G154700 Manihot esculenta HOM05D004556 ORTHO05D005298 2.5e-18 95.9 86 60.5
Actinidia30934 Actinidia chinensis HOM05D004556 ORTHO05D005298 3.3e-18 95.5 86 61.6
Aqoxy5G00420 Aquilegia oxysepala HOM05D004556 ORTHO05D005298 3.3e-18 95.5 86 58.1
Solyc01g097740.3 Solanum lycopersicum HOM05D004556 ORTHO05D005298 3.3e-18 95.5 86 57.0
AT3G04830 Arabidopsis thaliana HOM05D004556 ORTHO05D005298 4.2e-18 95.1 86 61.6
Potri.013G038700 Populus trichocarpa HOM05D004556 ORTHO05D005298 4.2e-18 95.1 77 63.6
Sopen01g041350 Solanum pennellii HOM05D004556 ORTHO05D005298 4.2e-18 95.1 86 57.0
PGSC0003DMG400022512 Solanum tuberosum HOM05D004556 ORTHO05D005298 4.2e-18 95.1 86 57.0
Carub.0003s0402 Capsella rubella HOM05D004556 ORTHO05D005298 5.5e-18 94.7 86 61.6
CAN.G134.134 Capsicum annuum HOM05D004556 ORTHO05D005298 5.5e-18 94.7 86 55.8
Atru.chr2.783 Acer truncatum HOM05D004556 ORTHO05D005298 7.2e-18 94.4 86 58.1
Potri.013G038501 Populus trichocarpa HOM05D004556 ORTHO05D005298 7.2e-18 94.4 86 58.1
Rhsim05G0160800 Rhododendron simsii HOM05D004556 ORTHO05D005298 7.2e-18 94.4 86 58.1
Hund22124 Selenicereus undatus HOM05D004556 ORTHO05D005298 7.2e-18 94.4 77 64.9
Thhalv10021217m.g Eutrema salsugineum HOM05D004556 ORTHO05D005298 9.5e-18 94.0 86 60.5
SGA_v2.0_scaffold43G16266 Striga asiatica HOM05D004556 ORTHO05D005298 9.5e-18 94.0 86 58.1
CARHR079090 Cardamine hirsuta HOM05D004556 ORTHO05D005298 1.2e-17 93.6 86 60.5
DCAR_029537 Daucus carota HOM05D004556 ORTHO05D005298 1.2e-17 93.6 86 59.3
Nitab4.5_0005441g0010 Nicotiana tabacum HOM05D004556 ORTHO05D005298 1.2e-17 93.6 86 55.8
Nitab4.5_0005729g0050 Nicotiana tabacum HOM05D004556 ORTHO05D005298 1.2e-17 93.6 86 55.8
PGR083G2383 Punica granatum HOM05D004556 ORTHO05D005298 1.2e-17 93.6 86 58.1
AL3G14990 Arabidopsis lyrata HOM05D004556 ORTHO05D005298 1.6e-17 93.2 86 60.5
CDE10G0245 Ceratophyllum demersum HOM05D004556 ORTHO05D005298 2.1e-17 92.8 86 58.1
BcaC01g04346 Brassica carinata HOM05D004556 ORTHO05D005298 2.8e-17 92.4 86 59.3
C03p41170 Brassica napus HOM05D004556 ORTHO05D005298 2.8e-17 92.4 86 59.3
Cc02_g31820 Coffea canephora HOM05D004556 ORTHO05D005298 2.8e-17 92.4 86 60.5
Eucgr.B01695 Eucalyptus grandis HOM05D004556 ORTHO05D005298 2.8e-17 92.4 86 58.1
HPP92_025859 Vanilla planifolia HOM05D004556 ORTHO05D005298 4.7e-17 91.7 85 57.6
Sp3g03660 Schrenkiella parvula HOM05D004556 ORTHO05D005298 6.1e-17 91.3 86 59.3
BcaB04g19297 Brassica carinata HOM05D004556 ORTHO05D005298 8.0e-17 90.9 86 59.3
A03p33860 Brassica napus HOM05D004556 ORTHO05D005298 8.0e-17 90.9 86 59.3
BolC3t16405H Brassica oleracea HOM05D004556 ORTHO05D005298 8.0e-17 90.9 86 59.3
BraA03t12560Z Brassica rapa HOM05D004556 ORTHO05D005298 8.0e-17 90.9 86 59.3
Sc09g0003820 Simmondsia chinensis HOM05D004556 ORTHO05D005298 8.0e-17 90.9 77 63.6
Sed0015548 Sechium edule HOM05D004556 ORTHO05D005298 1.0e-16 90.5 86 57.0
Aa31LG5G15220 Aethionema arabicum HOM05D004556 ORTHO05D005298 1.4e-16 90.1 86 58.1
EL10Ac8g19247 Beta vulgaris HOM05D004556 ORTHO05D005298 1.8e-16 89.7 86 55.8
BraA05t22977Z Brassica rapa HOM05D004556 ORTHO05D005298 1.8e-16 89.7 77 63.6
C05p62480 Brassica napus HOM05D004556 ORTHO05D005298 2.3e-16 89.4 77 63.6
CSS0008105 Camellia sinensis var. sinensis HOM05D004556 ORTHO05D005298 2.3e-16 89.4 86 58.1
Sed0026396 Sechium edule HOM05D004556 ORTHO05D005298 3.0e-16 89.0 86 55.8
BolC5t34901H Brassica oleracea HOM05D004556 ORTHO05D005298 4.0e-16 88.6 77 62.3
PSO210G7536 Papaver somniferum HOM05D004556 ORTHO05D005298 5.2e-16 88.2 77 62.3
PSO832G3279 Papaver somniferum HOM05D004556 ORTHO05D005298 5.2e-16 88.2 77 62.3
Peaxi162Scf01049g00037 Petunia axillaris HOM05D004556 ORTHO05D005298 6.8e-16 87.8 86 53.5
A05p42760 Brassica napus HOM05D004556 ORTHO05D005298 1.5e-15 86.7 77 62.3
Carub.0006s2567 Capsella rubella HOM05D004556 ORTHO05D005298 2.0e-15 86.3 86 57.0
SHI18353 Sapria himalayana HOM05D004556 ORTHO05D005298 2.6e-15 85.9 86 51.2
Ah.14g085270 Amaranthus hybridus HOM05D004556 ORTHO05D005298 4.4e-15 85.1 86 53.5
AL6G40460 Arabidopsis lyrata HOM05D004556 ORTHO05D005298 4.4e-15 85.1 77 61.0
AUR62027473 Chenopodium quinoa HOM05D004556 ORTHO05D005298 4.4e-15 85.1 86 54.7
AUR62034008 Chenopodium quinoa HOM05D004556 ORTHO05D005298 4.4e-15 85.1 86 54.7
AT5G28220 Arabidopsis thaliana HOM05D004556 ORTHO05D005298 5.7e-15 84.7 77 61.0
SEGI_22763 Sequoiadendron giganteum HOM05D004556 ORTHO05D005298 9.8e-15 84.0 82 52.4
Zm00001eb064390 Zea mays HOM05D004556 ORTHO05D005298 1.7e-14 83.2 77 54.5
Thhalv10004492m.g Eutrema salsugineum HOM05D004556 ORTHO05D005298 2.2e-14 82.8 77 59.7
Os02g0127000 Oryza sativa ssp. japonica HOM05D004556 ORTHO05D005298 2.2e-14 82.8 97 44.3
Mapoly0010s0190 Marchantia polymorpha HOM05D004556 ORTHO05D005298 2.8e-14 82.4 86 52.3
vmacro21412 Vaccinium macrocarpon HOM05D004556 ORTHO05D005298 3.7e-14 82.0 106 47.2
Zm00001eb210860 Zea mays HOM05D004556 ORTHO05D005298 8.3e-14 80.9 82 50.0
Pp3c22_11510 Physcomitrium patens HOM05D004556 ORTHO05D005298 1.1e-13 80.5 82 51.2
RcHm_v2.0_Chr6g0244381 Rosa chinensis HOM05D004556 ORTHO05D005298 2.4e-13 79.3 46 80.4
SMO351G0459 Selaginella moellendorffii HOM05D004556 ORTHO05D005298 2.4e-13 79.3 82 43.9
Cfa006453 Carpinus fangiana HOM05D004556 ORTHO05D005298 1.1e-10 70.5 77 55.8
Rhsim05G0161200 Rhododendron simsii HOM05D004556 ORTHO05D005298 1.9e-10 69.7 133 36.1
vmacro21326 Vaccinium macrocarpon HOM05D004556 ORTHO05D005298 1.2e-09 67.0 69 52.2
HanXRQChr11g0340961 Helianthus annuus HOM05D004556 ORTHO05D005298 2.3e-08 62.8 80 46.2
AagrBONN_evm.TU.Sc2ySwM_228.922 Anthoceros agrestis HOM05D004556 ORTHO05D005298 3.1e-08 62.4 43 65.1
CBR_g2743 Chara braunii HOM05D004556 ORTHO05D005298 1.3e-06 57.0 41 53.7
AagrBONN_evm.TU.Sc2ySwM_228.821 Anthoceros agrestis HOM05D004556 ORTHO05D005298 4.9e-06 55.1 40 60.0


User provided reference genes

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