Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G3185 Trifolium pratense HOM05D006233 ORTHO05D007247 1.3e-70 269.6 135 100.0
Ca_23330_v3 Cicer arietinum L. HOM05D006233 ORTHO05D007247 5.0e-59 231.1 135 84.4
Medtr8g017420 Medicago truncatula HOM05D006233 ORTHO05D007247 2.1e-57 225.7 135 85.2
Psat4g187760 Pisum sativum HOM05D006233 ORTHO05D007247 5.2e-56 221.1 127 86.6
arahy.Tifrunner.gnm1.ann1.LDN3BT Arachis hypogaea HOM05D006233 ORTHO05D007247 1.1e-42 176.8 142 70.4
Actinidia26050 Actinidia chinensis HOM05D006233 ORTHO05D007247 3.1e-40 168.7 147 61.2
Lj5g0016703 Lotus japonicus HOM05D006233 ORTHO05D007247 8.9e-40 167.2 148 64.2
VMungo0331G0931 Vigna mungo HOM05D006233 ORTHO05D007247 8.9e-40 167.2 137 66.4
Cfa003566 Carpinus fangiana HOM05D006233 ORTHO05D007247 1.3e-38 163.3 149 64.4
Manes.04G140700 Manihot esculenta HOM05D006233 ORTHO05D007247 1.3e-38 163.3 148 63.5
MD09G1191200 Malus domestica HOM05D006233 ORTHO05D007247 3.8e-38 161.8 150 62.7
Prupe.3G047000 Prunus persica HOM05D006233 ORTHO05D007247 3.8e-38 161.8 150 62.0
Actinidia39105 Actinidia chinensis HOM05D006233 ORTHO05D007247 4.9e-38 161.4 150 58.7
Atru.chr1.3781 Acer truncatum HOM05D006233 ORTHO05D007247 6.4e-38 161.0 142 63.4
Lj5A43T71 Lonicera japonica HOM05D006233 ORTHO05D007247 8.4e-38 160.6 160 60.6
CsaV3_3G043640 Cucumis sativus L. HOM05D006233 ORTHO05D007247 1.9e-37 159.5 149 61.7
Glyma.08G191600 Glycine max HOM05D006233 ORTHO05D007247 1.9e-37 159.5 133 64.7
MD17G1173900 Malus domestica HOM05D006233 ORTHO05D007247 1.9e-37 159.5 150 61.3
Phvul.010G137600 Phaseolus vulgaris HOM05D006233 ORTHO05D007247 1.9e-37 159.5 142 64.1
Gohir.D06G199600 Gossypium hirsutum HOM05D006233 ORTHO05D007247 4.1e-37 158.3 148 60.8
Manes.11G024800 Manihot esculenta HOM05D006233 ORTHO05D007247 4.1e-37 158.3 148 62.2
Gorai.010G232600 Gossypium raimondii HOM05D006233 ORTHO05D007247 9.2e-37 157.1 148 60.1
MELO3C013069.2 Cucumis melo HOM05D006233 ORTHO05D007247 1.2e-36 156.8 149 61.1
FvH4_6g33800 Fragaria vesca HOM05D006233 ORTHO05D007247 1.2e-36 156.8 152 60.5
FAN14G4045 Fragaria x ananassa HOM05D006233 ORTHO05D007247 1.2e-36 156.8 152 60.5
Lj5A42T58 Lonicera japonica HOM05D006233 ORTHO05D007247 1.2e-36 156.8 103 76.7
Gohir.A06G191200 Gossypium hirsutum HOM05D006233 ORTHO05D007247 2.1e-36 156.0 148 60.1
CiPaw.02G138900 Carya illinoinensis HOM05D006233 ORTHO05D007247 2.7e-36 155.6 148 60.8
CiPaw.01G223500 Carya illinoinensis HOM05D006233 ORTHO05D007247 3.5e-36 155.2 149 61.7
Glyma.07G008600 Glycine max HOM05D006233 ORTHO05D007247 4.6e-36 154.8 138 63.0
RcHm_v2.0_Chr2g0143671 Rosa chinensis HOM05D006233 ORTHO05D007247 4.6e-36 154.8 152 59.9
FAN09G3309 Fragaria x ananassa HOM05D006233 ORTHO05D007247 7.8e-36 154.1 152 59.2
Sed0001061 Sechium edule HOM05D006233 ORTHO05D007247 1.0e-35 153.7 149 62.4
Aqoxy7G01184 Aquilegia oxysepala HOM05D006233 ORTHO05D007247 1.7e-35 152.9 144 58.3
Ciclev10026736m.g Citrus clementina HOM05D006233 ORTHO05D007247 1.7e-35 152.9 143 60.8
FAN05G2224 Fragaria x ananassa HOM05D006233 ORTHO05D007247 1.7e-35 152.9 152 59.2
Hma1.2p1_1128F.1_g259780 Hydrangea macrophylla HOM05D006233 ORTHO05D007247 2.3e-35 152.5 149 57.0
Lalb_Chr25g0280771 Lupinus albus HOM05D006233 ORTHO05D007247 2.3e-35 152.5 138 61.6
CANSAT56G1839 Cannabis sativa HOM05D006233 ORTHO05D007247 3.0e-35 152.1 149 57.7
Haze_15979 Corylus avellana HOM05D006233 ORTHO05D007247 5.1e-35 151.4 171 56.1
Dinv04018 Davidia involucrata HOM05D006233 ORTHO05D007247 1.5e-34 149.8 145 58.6
ClCG07G013950 Citrullus lanatus HOM05D006233 ORTHO05D007247 1.9e-34 149.4 145 60.0
Migut.D00962 Erythranthe guttata HOM05D006233 ORTHO05D007247 2.5e-34 149.1 123 66.7
Cpa.g.sc25.68 Carica papaya HOM05D006233 ORTHO05D007247 4.3e-34 148.3 149 60.4
TWI63G1789 Tripterygium wilfordii HOM05D006233 ORTHO05D007247 4.3e-34 148.3 147 57.8
Dinv37902 Davidia involucrata HOM05D006233 ORTHO05D007247 7.3e-34 147.5 138 60.1
Carub.0003s1344 Capsella rubella HOM05D006233 ORTHO05D007247 1.1e-32 143.7 151 53.6
CDE03G0127 Ceratophyllum demersum HOM05D006233 ORTHO05D007247 1.1e-32 143.7 145 60.0
Cc04_g01780 Coffea canephora HOM05D006233 ORTHO05D007247 1.4e-32 143.3 103 68.9
ECA234G2580 Erigeron canadensis HOM05D006233 ORTHO05D007247 1.4e-32 143.3 148 54.7
Thecc.06G113700 Theobroma cacao HOM05D006233 ORTHO05D007247 2.4e-32 142.5 147 59.2
Aa31LG8G1060 Aethionema arabicum HOM05D006233 ORTHO05D007247 3.1e-32 142.1 150 54.7
TWI38G0279 Tripterygium wilfordii HOM05D006233 ORTHO05D007247 8.9e-32 140.6 148 54.7
AL3G26050 Arabidopsis lyrata HOM05D006233 ORTHO05D007247 2.0e-31 139.4 151 53.6
AT3G13882 Arabidopsis thaliana HOM05D006233 ORTHO05D007247 2.6e-31 139.0 151 53.0
COL.COLO4_38606 Corchorus olitorius HOM05D006233 ORTHO05D007247 2.6e-31 139.0 147 54.4
arahy.Tifrunner.gnm1.ann1.9P6A99 Arachis hypogaea HOM05D006233 ORTHO05D007247 4.4e-31 138.3 118 65.3
Eucgr.F03142 Eucalyptus grandis HOM05D006233 ORTHO05D007247 4.4e-31 138.3 148 56.1
Potri.003G041100 Populus trichocarpa HOM05D006233 ORTHO05D007247 4.4e-31 138.3 141 58.9
Sp3g12110 Schrenkiella parvula HOM05D006233 ORTHO05D007247 4.4e-31 138.3 152 52.6
SGA_v2.0_scaffold4G02044 Striga asiatica HOM05D006233 ORTHO05D007247 5.8e-31 137.9 146 57.5
Thhalv10021711m.g Eutrema salsugineum HOM05D006233 ORTHO05D007247 1.3e-30 136.7 150 53.3
HanXRQChr10g0312401 Helianthus annuus HOM05D006233 ORTHO05D007247 1.3e-30 136.7 149 54.4
BcaC05g29149 Brassica carinata HOM05D006233 ORTHO05D007247 1.7e-30 136.3 150 53.3
C05p53920 Brassica napus HOM05D006233 ORTHO05D007247 1.7e-30 136.3 150 53.3
CARHR088680 Cardamine hirsuta HOM05D006233 ORTHO05D007247 3.8e-30 135.2 152 53.9
PSO210G1065 Papaver somniferum HOM05D006233 ORTHO05D007247 3.8e-30 135.2 148 50.0
MSTRG.9502 Avicennia marina HOM05D006233 ORTHO05D007247 4.9e-30 134.8 115 64.3
PSO210G5036 Papaver somniferum HOM05D006233 ORTHO05D007247 1.1e-29 133.7 143 51.0
Peaxi162Scf00207g01343 Petunia axillaris HOM05D006233 ORTHO05D007247 1.1e-29 133.7 144 56.2
BcaB06g25428 Brassica carinata HOM05D006233 ORTHO05D007247 1.4e-29 133.3 151 51.7
BolC3t16928H Brassica oleracea HOM05D006233 ORTHO05D007247 1.9e-29 132.9 151 52.3
MBI04_g36913_MAGBIO Magnolia biondii HOM05D006233 ORTHO05D007247 1.9e-29 132.9 143 51.7
BcaB04g18809 Brassica carinata HOM05D006233 ORTHO05D007247 2.4e-29 132.5 150 52.0
A03p38490 Brassica napus HOM05D006233 ORTHO05D007247 2.4e-29 132.5 151 52.3
Nitab4.5_0000255g0250 Nicotiana tabacum HOM05D006233 ORTHO05D007247 2.4e-29 132.5 143 55.9
GSVIVG01016799001 Vitis vinifera HOM05D006233 ORTHO05D007247 4.2e-29 131.7 153 52.9
Sopen06g022210 Solanum pennellii HOM05D006233 ORTHO05D007247 5.4e-29 131.3 145 55.2
C03p46650 Brassica napus HOM05D006233 ORTHO05D007247 7.1e-29 131.0 151 51.7
BcaC01g03969 Brassica carinata HOM05D006233 ORTHO05D007247 9.3e-29 130.6 151 51.7
PGR119G1625 Punica granatum HOM05D006233 ORTHO05D007247 9.3e-29 130.6 153 49.7
Nitab4.5_0005918g0010 Nicotiana tabacum HOM05D006233 ORTHO05D007247 1.2e-28 130.2 143 55.2
PGSC0003DMG400004851 Solanum tuberosum HOM05D006233 ORTHO05D007247 4.6e-28 128.3 145 54.5
Nn6g35511 Nelumbo nucifera HOM05D006233 ORTHO05D007247 6.0e-28 127.9 143 51.7
Solyc06g062760.3 Solanum lycopersicum HOM05D006233 ORTHO05D007247 1.7e-27 126.3 146 54.8
BraA03t12999Z Brassica rapa HOM05D006233 ORTHO05D007247 3.0e-27 125.6 155 51.0
AUR62009846 Chenopodium quinoa HOM05D006233 ORTHO05D007247 3.0e-27 125.6 110 61.8
BraA03t13001Z Brassica rapa HOM05D006233 ORTHO05D007247 3.9e-27 125.2 152 51.3
THA.LOC104822640 Tarenaya hassleriana HOM05D006233 ORTHO05D007247 6.6e-27 124.4 103 67.0
EL10Ac7g16362 Beta vulgaris HOM05D006233 ORTHO05D007247 1.1e-26 123.6 103 65.0
AUR62038159 Chenopodium quinoa HOM05D006233 ORTHO05D007247 3.3e-26 122.1 160 50.6
FAN21G3416 Fragaria x ananassa HOM05D006233 ORTHO05D007247 9.6e-26 120.6 130 54.6
BolC5t34058H Brassica oleracea HOM05D006233 ORTHO05D007247 4.8e-25 118.2 136 50.0
Hund20828 Selenicereus undatus HOM05D006233 ORTHO05D007247 6.2e-25 117.9 167 47.3
Actinidia32155 Actinidia chinensis HOM05D006233 ORTHO05D007247 8.1e-25 117.5 107 58.9
HanXRQChr04g0094941 Helianthus annuus HOM05D006233 ORTHO05D007247 1.1e-24 117.1 113 59.3
Duzib192G0098 Durio zibethinus HOM05D006233 ORTHO05D007247 2.6e-23 112.5 123 52.0
Zm00001eb160070 Zea mays HOM05D006233 ORTHO05D007247 1.3e-22 110.2 140 47.9
Rhsim08G0234900 Rhododendron simsii HOM05D006233 ORTHO05D007247 2.9e-22 109.0 131 48.9
Os01g0571200 Oryza sativa ssp. japonica HOM05D006233 ORTHO05D007247 3.2e-21 105.5 147 44.2
FAN11G2894 Fragaria x ananassa HOM05D000283 ORTHO05D007247 1.6e-20 103.2 134 50.0
ATR0789G010 Amborella trichopoda HOM05D006233 ORTHO05D007247 3.9e-19 98.6 75 64.0
unitig_8.g4463 Utricularia gibba HOM05D006233 ORTHO05D007247 1.1e-18 97.1 92 52.2
Lsat_1_v5_gn_5_135041 Lactuca sativa HOM05D006233 ORTHO05D007247 5.6e-18 94.7 78 59.0
SGA_v2.0_scaffold68G22913 Striga asiatica HOM05D006233 ORTHO05D007247 2.4e-16 89.4 65 67.7
A03p38520 Brassica napus HOM05D006233 ORTHO05D007247 2.6e-15 85.9 124 41.9
Nn8g38812 Nelumbo nucifera HOM05D006233 ORTHO05D007247 5.8e-15 84.7 123 44.7
CDE06G1672 Ceratophyllum demersum HOM05D006233 ORTHO05D007247 7.6e-15 84.3 114 50.0
Zm00001eb357240 Zea mays HOM05D006233 ORTHO05D007247 3.2e-13 79.0 118 39.8
BcaC05g29150 Brassica carinata HOM05D006233 ORTHO05D007247 1.3e-11 73.6 135 43.0
Pp3c4_29560 Physcomitrium patens HOM05D006233 ORTHO05D007247 3.0e-11 72.4 72 50.0
HPP92_007656 Vanilla planifolia HOM05D006233 ORTHO05D007247 3.9e-11 72.0 121 34.7
BraA05t22362Z Brassica rapa HOM05D006233 ORTHO05D007247 2.5e-10 69.3 173 34.7
AagrBONN_evm.TU.Sc2ySwM_368.223 Anthoceros agrestis HOM05D003143 ORTHO05D003628 7.4e-10 67.8 57 57.9
Nn1g01194 Nelumbo nucifera HOM05D006233 ORTHO05D007247 3.7e-09 65.5 50 66.0
CBR_g8600 Chara braunii HOM05D006233 ORTHO05D007247 8.2e-09 64.3 48 62.5
Mapoly0016s0011 Marchantia polymorpha HOM05D006233 ORTHO05D007247 1.1e-08 63.9 53 58.5
MCO16G417 Micromonas commoda HOM05D003208 ORTHO05D004103 1.4e-08 63.5 58 53.4
QL05p010226 Quercus lobata HOM05D006233 ORTHO05D007247 4.0e-08 62.0 95 46.3
Ca_29232_v3 Cicer arietinum L. HOM05D006233 ORTHO05D007247 1.2e-07 60.5 42 69.0
QL05p010144 Quercus lobata HOM05D006233 ORTHO05D007247 1.5e-07 60.1 93 46.2
CSS0050466 Camellia sinensis var. sinensis HOM05D006233 ORTHO05D007247 4.5e-07 58.5 92 43.5
CSS0050070 Camellia sinensis var. sinensis HOM05D041584 ORTHO05D007247 2.2e-06 56.2 33 72.7
RcHm_v2.0_Chr5g0063721 Rosa chinensis HOM05D006233 ORTHO05D007247 2.9e-06 55.8 93 39.8
Sed0004594 Sechium edule HOM05D006233 ORTHO05D007247 8.4e-06 54.3 91 45.1


User provided reference genes

Program Settings