Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G31818 Trifolium pratense HOM05D004646 ORTHO05D005829 2.7e-149 531.9 266 100.0
Medtr8g467540 Medicago truncatula HOM05D004646 ORTHO05D005829 2.0e-120 436.0 264 84.8
Psat4g134400 Pisum sativum HOM05D004646 ORTHO05D005829 7.7e-112 407.5 268 81.3
Lj4g0000065 Lotus japonicus HOM05D004646 ORTHO05D005829 2.7e-104 382.5 270 75.6
Phvul.011G179800 Phaseolus vulgaris HOM05D004646 ORTHO05D005829 2.5e-102 375.9 271 72.7
Lalb_Chr09g0329301 Lupinus albus HOM05D004646 ORTHO05D005829 8.0e-101 370.9 270 73.3
Phvul.L004046 Phaseolus vulgaris HOM05D004646 ORTHO05D005829 4.0e-100 368.6 267 72.3
Glyma.18G119400 Glycine max HOM05D004646 ORTHO05D005829 1.7e-98 363.2 272 72.4
Lalb_Chr05g0220381 Lupinus albus HOM05D004646 ORTHO05D005829 1.6e-96 356.7 271 72.0
VMungo1127G0944 Vigna mungo HOM05D004646 ORTHO05D005829 1.6e-96 356.7 271 68.3
CiPaw.05G135800 Carya illinoinensis HOM05D004646 ORTHO05D005829 7.0e-89 331.3 264 64.8
arahy.Tifrunner.gnm1.ann1.9WQ92K Arachis hypogaea HOM05D004646 ORTHO05D005829 1.7e-87 326.6 267 64.4
QL03p063033 Quercus lobata HOM05D004646 ORTHO05D005829 2.3e-87 326.2 250 66.4
Glyma.08G300800 Glycine max HOM05D004646 ORTHO05D005829 1.1e-86 323.9 182 85.2
Cfa008987 Carpinus fangiana HOM05D004646 ORTHO05D005829 1.5e-86 323.6 267 64.0
QL03p064307 Quercus lobata HOM05D004646 ORTHO05D005829 1.5e-86 323.6 249 66.3
Hma1.2p1_0795F.1_g218775 Hydrangea macrophylla HOM05D004646 ORTHO05D005829 1.6e-85 320.1 232 65.5
VMungo0251G2645 Vigna mungo HOM05D004646 ORTHO05D005829 1.6e-85 320.1 202 77.7
CANSAT64G1881 Cannabis sativa HOM05D004646 ORTHO05D005829 2.8e-85 319.3 227 67.8
Dinv16641 Davidia involucrata HOM05D004646 ORTHO05D005829 4.7e-85 318.5 264 61.7
arahy.Tifrunner.gnm1.ann1.K6CIAB Arachis hypogaea HOM05D004646 ORTHO05D005829 1.4e-84 317.0 281 61.2
Manes.05G100900 Manihot esculenta HOM05D004646 ORTHO05D005829 2.3e-84 316.2 267 63.3
Thecc.02G347000 Theobroma cacao HOM05D004646 ORTHO05D005829 4.0e-84 315.5 214 70.1
Potri.008G147600 Populus trichocarpa HOM05D004646 ORTHO05D005829 8.9e-84 314.3 196 73.0
Atru.chr11.1794 Acer truncatum HOM05D004646 ORTHO05D005829 2.0e-83 313.2 265 61.5
Ciclev10032082m.g Citrus clementina HOM05D004646 ORTHO05D005829 2.6e-83 312.8 211 69.2
Haze_12017 Corylus avellana HOM05D004646 ORTHO05D005829 2.6e-83 312.8 280 61.4
Cc11_g13050 Coffea canephora HOM05D004646 ORTHO05D005829 7.5e-83 311.2 205 70.2
COL.COLO4_23008 Corchorus olitorius HOM05D004646 ORTHO05D005829 7.5e-83 311.2 211 68.7
ClCG05G024330 Citrullus lanatus HOM05D004646 ORTHO05D005829 9.9e-83 310.8 270 60.0
Prupe.1G273600 Prunus persica HOM05D004646 ORTHO05D005829 1.7e-82 310.1 251 61.8
CSS0046070 Camellia sinensis var. sinensis HOM05D004646 ORTHO05D005829 3.7e-82 308.9 270 61.1
GSVIVG01019995001 Vitis vinifera HOM05D004646 ORTHO05D005829 6.4e-82 308.1 248 64.9
Sabra08G0112200 Salix brachista HOM05D004646 ORTHO05D005829 8.3e-82 307.8 192 72.9
AUR62028786 Chenopodium quinoa HOM05D004646 ORTHO05D005829 4.1e-81 305.4 249 61.4
Duzib251G0705 Durio zibethinus HOM05D004646 ORTHO05D005829 5.4e-81 305.1 211 70.1
MELO3C012090.2 Cucumis melo HOM05D004646 ORTHO05D005829 9.2e-81 304.3 205 69.3
Eucgr.B03438 Eucalyptus grandis HOM05D004646 ORTHO05D005829 9.2e-81 304.3 197 69.5
Sed0009585 Sechium edule HOM05D004646 ORTHO05D005829 9.2e-81 304.3 203 71.4
Sc14g0008260 Simmondsia chinensis HOM05D004646 ORTHO05D005829 2.1e-80 303.1 266 59.4
Gohir.A04G147800 Gossypium hirsutum HOM05D004646 ORTHO05D005829 2.7e-80 302.8 255 60.8
CsaV3_5G032630 Cucumis sativus L. HOM05D004646 ORTHO05D005829 4.6e-80 302.0 205 69.3
Nn3g17224 Nelumbo nucifera HOM05D004646 ORTHO05D005829 4.6e-80 302.0 207 67.1
PGR102G1495 Punica granatum HOM05D004646 ORTHO05D005829 6.0e-80 301.6 262 59.9
Gorai.012G187500 Gossypium raimondii HOM05D004646 ORTHO05D005829 1.7e-79 300.1 221 66.1
MSTRG.7804 Avicennia marina HOM05D004646 ORTHO05D005829 8.6e-79 297.7 215 65.6
Gohir.D04G192100 Gossypium hirsutum HOM05D004646 ORTHO05D005829 8.6e-79 297.7 221 66.1
MD13G1072600 Malus domestica HOM05D004646 ORTHO05D005829 1.1e-78 297.4 215 66.0
Oeu055120.1 Olea europaea HOM05D004646 ORTHO05D005829 1.9e-78 296.6 212 65.6
Aqoxy3G03371 Aquilegia oxysepala HOM05D004646 ORTHO05D005829 4.3e-78 295.4 273 57.9
Lsat_1_v5_gn_8_53300 Lactuca sativa HOM05D004646 ORTHO05D005829 3.6e-77 292.4 275 58.5
MD16G1073400 Malus domestica HOM05D004646 ORTHO05D005829 3.6e-77 292.4 217 65.4
Carub.0001s1395 Capsella rubella HOM05D004646 ORTHO05D005829 1.4e-76 290.4 229 62.4
Actinidia31896 Actinidia chinensis HOM05D004646 ORTHO05D005829 4.0e-76 288.9 188 72.9
SalBow2G3250 Salvia bowleyana HOM05D004646 ORTHO05D005829 6.8e-76 288.1 220 64.1
THA.LOC104801795 Tarenaya hassleriana HOM05D004646 ORTHO05D005829 1.2e-75 287.3 255 59.2
RcHm_v2.0_Chr4g0439911 Rosa chinensis HOM05D004646 ORTHO05D005829 3.4e-75 285.8 253 57.3
PGSC0003DMG400031270 Solanum tuberosum HOM05D004646 ORTHO05D005829 7.6e-75 284.6 259 57.5
FAN12G2979 Fragaria x ananassa HOM05D004646 ORTHO05D005829 9.9e-75 284.3 246 59.8
Sopen05g003380 Solanum pennellii HOM05D004646 ORTHO05D005829 1.7e-74 283.5 265 56.2
CDE09G0693 Ceratophyllum demersum HOM05D004646 ORTHO05D005829 2.2e-74 283.1 211 64.9
Solyc05g007500.4 Solanum lycopersicum HOM05D004646 ORTHO05D005829 2.2e-74 283.1 265 56.6
PSO832G2587 Papaver somniferum HOM05D004646 ORTHO05D005829 4.9e-74 282.0 213 62.0
FAN07G2721 Fragaria x ananassa HOM05D004646 ORTHO05D005829 6.4e-74 281.6 219 63.5
ATR0564G518 Amborella trichopoda HOM05D004646 ORTHO05D005829 1.1e-73 280.8 189 70.4
ECA233G2883 Erigeron canadensis HOM05D004646 ORTHO05D005829 1.1e-73 280.8 223 62.3
PSO063G0788 Papaver somniferum HOM05D004646 ORTHO05D005829 1.1e-73 280.8 213 62.0
Hund25246 Selenicereus undatus HOM05D004646 ORTHO05D005829 1.1e-73 280.8 215 62.8
C05p12020 Brassica napus HOM05D004646 ORTHO05D005829 1.4e-73 280.4 212 64.6
Peaxi162Scf00541g00118 Petunia axillaris HOM05D004646 ORTHO05D005829 1.4e-73 280.4 239 60.3
FvH4_4g31430 Fragaria vesca HOM05D004646 ORTHO05D005829 3.2e-73 279.3 246 58.9
Aa31LG1G790 Aethionema arabicum HOM05D004646 ORTHO05D005829 4.1e-73 278.9 213 62.9
BolC5t29957H Brassica oleracea HOM05D004646 ORTHO05D005829 4.1e-73 278.9 212 64.6
HanXRQChr12g0362151 Helianthus annuus HOM05D004646 ORTHO05D005829 4.1e-73 278.9 278 55.4
CAN.G58.23 Capsicum annuum HOM05D004646 ORTHO05D005829 5.4e-73 278.5 188 67.6
vmacro01257 Vaccinium macrocarpon HOM05D004646 ORTHO05D005829 5.4e-73 278.5 191 68.6
AT1G14270 Arabidopsis thaliana HOM05D004646 ORTHO05D005829 7.1e-73 278.1 257 58.0
Thhalv10008130m.g Eutrema salsugineum HOM05D004646 ORTHO05D005829 7.1e-73 278.1 263 55.9
AL1G26150 Arabidopsis lyrata HOM05D004646 ORTHO05D005829 9.2e-73 277.7 258 56.6
FAN17G1826 Fragaria x ananassa HOM05D004646 ORTHO05D005829 9.2e-73 277.7 246 58.5
Sp1g12620 Schrenkiella parvula HOM05D004646 ORTHO05D005829 1.2e-72 277.3 246 57.7
A06p10240 Brassica napus HOM05D004646 ORTHO05D005829 3.5e-72 275.8 213 63.4
BraA06t24207Z Brassica rapa HOM05D004646 ORTHO05D005829 3.5e-72 275.8 213 63.4
A08p32030 Brassica napus HOM05D004646 ORTHO05D005829 1.7e-71 273.5 207 64.3
unitig_747.g21177 Utricularia gibba HOM05D004646 ORTHO05D005829 1.7e-71 273.5 189 65.1
EL10Ac6g13196 Beta vulgaris HOM05D004646 ORTHO05D005829 3.0e-71 272.7 254 55.5
Hund05883 Selenicereus undatus HOM05D004646 ORTHO05D005829 5.1e-71 271.9 190 67.9
SGA_v2.0_scaffold53G19364 Striga asiatica HOM05D004646 ORTHO05D005829 8.6e-71 271.2 203 66.0
Nitab4.5_0001503g0160 Nicotiana tabacum HOM05D004646 ORTHO05D005829 7.3e-70 268.1 216 61.1
BraA08t35124Z Brassica rapa HOM05D004646 ORTHO05D005829 9.6e-70 267.7 207 62.8
BcaC07g38729 Brassica carinata HOM05D004646 ORTHO05D005829 1.6e-69 266.9 203 62.1
BcaB03g13106 Brassica carinata HOM05D004646 ORTHO05D005829 2.8e-69 266.2 245 54.7
C08p16560 Brassica napus HOM05D004646 ORTHO05D005829 4.7e-69 265.4 258 55.8
BolC8t49284H Brassica oleracea HOM05D004646 ORTHO05D005829 4.7e-69 265.4 258 55.8
Rhsim12G0063600 Rhododendron simsii HOM05D004646 ORTHO05D005829 2.0e-67 260.0 262 50.4
Migut.L01300 Erythranthe guttata HOM05D004646 ORTHO05D005829 2.6e-67 259.6 213 59.2
HPP92_027580 Vanilla planifolia HOM05D004646 ORTHO05D005829 1.9e-65 253.4 189 59.8
Cpa.g.sc128.19 Carica papaya HOM05D004646 ORTHO05D005829 7.1e-65 251.5 177 70.6
Zm00001eb312490 Zea mays HOM05D004646 ORTHO05D005829 2.1e-64 250.0 205 58.5
AUR62005771 Chenopodium quinoa HOM05D004646 ORTHO05D005829 4.6e-64 248.8 217 58.1
Lj2g0013736 Lotus japonicus HOM05D004646 ORTHO05D005829 2.3e-63 246.5 273 53.5
arahy.Tifrunner.gnm1.ann1.33WNW9 Arachis hypogaea HOM05D004646 ORTHO05D005829 1.9e-62 243.4 187 63.6
TAR371G0666 Trochodendron aralioides HOM05D004646 ORTHO05D005829 1.9e-62 243.4 266 48.9
FAN22G0666 Fragaria x ananassa HOM05D004646 ORTHO05D005829 2.4e-60 236.5 156 73.1
Zm00001eb041360 Zea mays HOM05D004646 ORTHO05D005829 3.1e-60 236.1 186 58.6
BcaC05g25320 Brassica carinata HOM05D004646 ORTHO05D005829 5.3e-60 235.3 212 59.0
DCAR_027410 Daucus carota HOM05D004646 ORTHO05D005829 7.6e-59 231.5 255 52.2
Nn4g23150 Nelumbo nucifera HOM05D004646 ORTHO05D005829 4.2e-57 225.7 205 55.6
Lj2g0003230 Lotus japonicus HOM05D004646 ORTHO05D005829 3.5e-56 222.6 278 47.1
Migut.L01299 Erythranthe guttata HOM05D004646 ORTHO05D005829 6.0e-56 221.9 213 52.1
Nitab4.5_0011071g0010 Nicotiana tabacum HOM05D004646 ORTHO05D005829 3.3e-54 216.1 212 53.3
Migut.L01298 Erythranthe guttata HOM05D004646 ORTHO05D005829 4.3e-54 215.7 206 52.4
MBI05_g08286_MAGBIO Magnolia biondii HOM05D004646 ORTHO05D005829 7.4e-54 214.9 285 45.3
CARHR014690 Cardamine hirsuta HOM05D004646 ORTHO05D005829 1.3e-50 204.1 211 51.7
Mapoly0033s0092 Marchantia polymorpha HOM05D004646 ORTHO05D005829 4.3e-46 189.1 204 47.1
Ca_07115_v3 Cicer arietinum L. HOM05D004646 ORTHO05D005829 4.8e-45 185.7 104 84.6
Pp3c21_22610 Physcomitrium patens HOM05D004646 ORTHO05D005829 2.1e-40 170.2 226 43.8
TAR629G0643 Trochodendron aralioides HOM05D004646 ORTHO05D005829 3.5e-40 169.5 207 42.0
QL03p063041 Quercus lobata HOM05D004646 ORTHO05D005829 3.0e-39 166.4 266 40.2
QL03p064300 Quercus lobata HOM05D004646 ORTHO05D005829 6.7e-39 165.2 266 40.2
Nn1g09141 Nelumbo nucifera HOM05D004646 ORTHO05D005829 1.5e-38 164.1 264 36.0
CBR_g52133 Chara braunii HOM05D004646 ORTHO05D005829 1.4e-36 157.5 192 46.4
arahy.Tifrunner.gnm1.ann1.J8CRVY Arachis hypogaea HOM05D004646 ORTHO05D005829 3.1e-36 156.4 167 51.5
SMO007G0001 Selaginella moellendorffii HOM05D004646 ORTHO05D005829 1.2e-35 154.5 157 54.1
SMO200G0049 Selaginella moellendorffii HOM05D004646 ORTHO05D005829 1.2e-35 154.5 157 54.1
AagrBONN_evm.TU.Sc2ySwM_228.1869 Anthoceros agrestis HOM05D004646 ORTHO05D005829 7.6e-35 151.8 207 41.1
PSO767G0002 Papaver somniferum HOM05D004646 ORTHO05D005829 3.8e-34 149.4 245 32.7
MBI19_g09320_MAGBIO Magnolia biondii HOM05D004646 ORTHO05D005829 1.4e-31 141.0 154 44.8
CDE04G3684 Ceratophyllum demersum HOM05D004646 ORTHO05D005829 4.8e-29 132.5 157 43.3
FAN09G3389 Fragaria x ananassa HOM05D004646 ORTHO05D005829 5.3e-28 129.0 124 51.6
FAN23G2906 Fragaria x ananassa HOM05D004646 ORTHO05D005829 4.5e-27 125.9 171 44.4
PSO384G3479 Papaver somniferum HOM05D004646 ORTHO05D005829 1.7e-26 124.0 245 29.4
RcHm_v2.0_Chr4g0413061 Rosa chinensis HOM05D004646 ORTHO05D005829 4.8e-21 105.9 72 59.7
PRCOL_00002500 Prasinoderma coloniale HOM05D004646 ORTHO05D005829 1.8e-20 104.0 183 36.6
FAN09G2429 Fragaria x ananassa HOM05D004646 ORTHO05D005829 1.6e-16 90.9 133 45.9
FAN12G3236 Fragaria x ananassa HOM05D004646 ORTHO05D005829 1.6e-16 90.9 133 45.9
FAN04G0237 Fragaria x ananassa HOM05D004646 ORTHO05D005829 6.1e-16 89.0 126 46.0
FAN17G1446 Fragaria x ananassa HOM05D004646 ORTHO05D005829 8.0e-16 88.6 133 45.1
FAN21G2061 Fragaria x ananassa HOM05D004646 ORTHO05D005829 8.0e-16 88.6 153 43.1
ATR0307G023 Amborella trichopoda HOM05D004646 ORTHO05D005829 6.3e-13 79.0 152 30.3
ECA247G1057 Erigeron canadensis HOM05D004646 ORTHO05D000001 6.3e-13 79.0 55 72.7
VMungo0331G0231 Vigna mungo HOM05D004646 ORTHO05D012812 5.3e-12 75.9 45 75.6
Cre06.g310050 Chlamydomonas reinhardtii HOM05D004646 ORTHO05D005829 1.0e-10 71.6 195 33.3
CANSAT21G2538 Cannabis sativa HOM05D003816 ORTHO05D004410 6.7e-07 58.9 181 27.1
Lsat_1_v5_gn_2_133601 Lactuca sativa HOM05D003816 ORTHO05D004410 8.8e-07 58.5 180 26.7
GSVIVG01020531001 Vitis vinifera HOM05D005443 ORTHO05D009021 1.5e-06 57.8 182 26.9
THA.LOC104809356 Tarenaya hassleriana HOM05D003816 ORTHO05D004410 2.0e-06 57.4 206 24.3
DCAR_020292 Daucus carota HOM05D003816 ORTHO05D004410 2.6e-06 57.0 180 27.2
Medtr1g099420 Medicago truncatula HOM05D003816 ORTHO05D004410 2.6e-06 57.0 206 26.7
TWI15G0065 Tripterygium wilfordii HOM05D003816 ORTHO05D004410 3.3e-06 56.6 178 27.0
MD06G1095700 Malus domestica HOM05D003816 ORTHO05D004410 5.7e-06 55.8 180 28.9
Prupe.5G110300 Prunus persica HOM05D003816 ORTHO05D004410 5.7e-06 55.8 178 27.0
Ciclev10020944m.g Citrus clementina HOM05D003816 ORTHO05D004410 7.5e-06 55.5 262 27.5
Lj5g0016706 Lotus japonicus HOM05D003816 ORTHO05D004410 7.5e-06 55.5 179 27.9


User provided reference genes

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