Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G31765 Trifolium pratense HOM05D003303 ORTHO05D003887 1.8e-35 152.1 81 100.0
TPR.G31761 Trifolium pratense HOM05D003303 ORTHO05D003887 3.3e-21 104.8 84 76.2
Medtr3g107550 Medicago truncatula HOM05D003303 ORTHO05D003887 1.2e-20 102.8 84 73.8
Psat5g028480 Pisum sativum HOM05D003303 ORTHO05D003887 6.2e-20 100.5 84 73.8
Ca_15721_v3 Cicer arietinum L. HOM05D003303 ORTHO05D003887 1.8e-19 99.0 84 73.8
Lj1g0001911 Lotus japonicus HOM05D003303 ORTHO05D003887 1.2e-18 96.3 81 70.4
Glyma.04G068100 Glycine max HOM05D003303 ORTHO05D003887 1.5e-18 95.9 84 67.9
Glyma.06G069800 Glycine max HOM05D003303 ORTHO05D003887 2.0e-18 95.5 84 67.9
VMungo1309G1624 Vigna mungo HOM05D003303 ORTHO05D003887 7.5e-18 93.6 81 66.7
Sed0002484 Sechium edule HOM05D003303 ORTHO05D003887 9.8e-18 93.2 84 69.0
Lalb_Chr23g0268741 Lupinus albus HOM05D003303 ORTHO05D003887 2.9e-17 91.7 84 66.7
Aqoxy7G02100 Aquilegia oxysepala HOM05D003303 ORTHO05D003887 4.9e-17 90.9 81 63.0
Phvul.009G094400 Phaseolus vulgaris HOM05D003303 ORTHO05D003887 4.9e-17 90.9 81 65.4
Sed0025998 Sechium edule HOM05D003303 ORTHO05D003887 1.9e-16 89.0 81 66.7
Dinv30167 Davidia involucrata HOM05D003303 ORTHO05D003887 2.4e-16 88.6 84 63.1
CSS0039322 Camellia sinensis var. sinensis HOM05D003303 ORTHO05D003887 3.2e-16 88.2 84 63.1
Lalb_Chr08g0243991 Lupinus albus HOM05D003303 ORTHO05D003887 3.2e-16 88.2 84 66.7
CiPaw.08G012800 Carya illinoinensis HOM05D003303 ORTHO05D003887 4.1e-16 87.8 84 64.3
TAR636G1230 Trochodendron aralioides HOM05D003303 ORTHO05D003887 4.1e-16 87.8 84 61.9
MSTRG.1714 Avicennia marina HOM05D003303 ORTHO05D003887 5.4e-16 87.4 84 63.1
AT5G11280 Arabidopsis thaliana HOM05D003303 ORTHO05D003887 7.0e-16 87.0 81 65.4
MELO3C011249.2 Cucumis melo HOM05D003303 ORTHO05D003887 7.0e-16 87.0 84 64.3
GSVIVG01035826001 Vitis vinifera HOM05D003303 ORTHO05D003887 7.0e-16 87.0 84 63.1
AL6G21910 Arabidopsis lyrata HOM05D003303 ORTHO05D003887 9.2e-16 86.7 81 63.0
CsaV3_2G031950 Cucumis sativus L. HOM05D003303 ORTHO05D003887 9.2e-16 86.7 83 63.9
Actinidia22360 Actinidia chinensis HOM05D003303 ORTHO05D003887 2.0e-15 85.5 84 59.5
MSTRG.25996 Avicennia marina HOM05D003303 ORTHO05D003887 2.0e-15 85.5 84 60.7
CANSAT64G2029 Cannabis sativa HOM05D003303 ORTHO05D003887 2.0e-15 85.5 81 60.5
CARHR201980 Cardamine hirsuta HOM05D003303 ORTHO05D003887 2.0e-15 85.5 81 61.7
Cpa.g.sc533.1 Carica papaya HOM05D003303 ORTHO05D003887 2.0e-15 85.5 84 59.5
ClCG08G013220 Citrullus lanatus HOM05D003303 ORTHO05D003887 2.0e-15 85.5 84 61.9
Migut.E01788 Erythranthe guttata HOM05D003303 ORTHO05D003887 2.0e-15 85.5 84 60.7
Thhalv10014677m.g Eutrema salsugineum HOM05D003303 ORTHO05D003887 2.0e-15 85.5 81 61.7
Actinidia13249 Actinidia chinensis HOM05D003303 ORTHO05D003887 2.7e-15 85.1 84 60.7
Lj8A668G29 Lonicera japonica HOM05D003303 ORTHO05D003887 2.7e-15 85.1 84 61.9
Lj8A679G18 Lonicera japonica HOM05D003303 ORTHO05D003887 2.7e-15 85.1 84 61.9
Manes.03G016900 Manihot esculenta HOM05D003303 ORTHO05D003887 4.6e-15 84.3 84 61.9
Potri.006G251600 Populus trichocarpa HOM05D003303 ORTHO05D003887 4.6e-15 84.3 84 60.7
arahy.Tifrunner.gnm1.ann1.CWZP7X Arachis hypogaea HOM05D003303 ORTHO05D003887 7.8e-15 83.6 81 59.3
arahy.Tifrunner.gnm1.ann1.DJG6PN Arachis hypogaea HOM05D003303 ORTHO05D003887 7.8e-15 83.6 81 59.3
Carub.0006s0975 Capsella rubella HOM05D003303 ORTHO05D003887 7.8e-15 83.6 81 63.0
Gohir.A08G236700 Gossypium hirsutum HOM05D003303 ORTHO05D003887 7.8e-15 83.6 84 60.7
Nn2g11966 Nelumbo nucifera HOM05D003303 ORTHO05D003887 7.8e-15 83.6 84 61.9
Eucgr.C02806 Eucalyptus grandis HOM05D003303 ORTHO05D003887 1.0e-14 83.2 81 60.5
Thecc.09G149800 Theobroma cacao HOM05D002238 ORTHO05D007272 1.0e-14 83.2 84 60.7
Aa31LG3G15910 Aethionema arabicum HOM05D003303 ORTHO05D003887 1.3e-14 82.8 81 61.7
vmacro11152 Vaccinium macrocarpon HOM05D003303 ORTHO05D003887 1.3e-14 82.8 84 59.5
Sabra06G0196600 Salix brachista HOM05D003303 ORTHO05D003887 1.7e-14 82.4 84 59.5
BcaC04g19244 Brassica carinata HOM05D003303 ORTHO05D003887 2.3e-14 82.0 81 60.5
C09p65610 Brassica napus HOM05D003303 ORTHO05D003887 2.3e-14 82.0 81 60.5
BolC9t59382H Brassica oleracea HOM05D003303 ORTHO05D003887 2.3e-14 82.0 81 60.5
COL.COLO4_00194 Corchorus olitorius HOM05D003303 ORTHO05D003887 2.3e-14 82.0 81 60.5
DCAR_006232 Daucus carota HOM05D003303 ORTHO05D003887 2.3e-14 82.0 84 59.5
A10p26440 Brassica napus HOM05D003303 ORTHO05D003887 3.0e-14 81.6 83 62.7
Duzib168G0888 Durio zibethinus HOM05D003303 ORTHO05D003887 3.0e-14 81.6 84 59.5
SalBow1G3705 Salvia bowleyana HOM05D003303 ORTHO05D003887 3.0e-14 81.6 84 57.1
Hma1.2p1_0000F.1_g000400 Hydrangea macrophylla HOM05D003303 ORTHO05D003887 3.9e-14 81.3 82 59.8
Rhsim02G0195600 Rhododendron simsii HOM05D003303 ORTHO05D003887 3.9e-14 81.3 84 57.1
TWI63G1648 Tripterygium wilfordii HOM05D003303 ORTHO05D003887 3.9e-14 81.3 84 57.1
BcaB08g37075 Brassica carinata HOM05D003303 ORTHO05D003887 6.6e-14 80.5 83 61.4
MD15G1123100 Malus domestica HOM05D003303 ORTHO05D003887 6.6e-14 80.5 84 61.9
RcHm_v2.0_Chr6g0298251 Rosa chinensis HOM05D003303 ORTHO05D003887 6.6e-14 80.5 84 58.3
Atru.chr7.2388 Acer truncatum HOM05D003303 ORTHO05D003887 8.6e-14 80.1 84 56.0
BraA10t44701Z Brassica rapa HOM05D003303 ORTHO05D003887 8.6e-14 80.1 83 61.4
Gohir.D08G257300 Gossypium hirsutum HOM05D003303 ORTHO05D003887 1.1e-13 79.7 84 59.5
Gorai.004G274300 Gossypium raimondii HOM05D003303 ORTHO05D003887 1.1e-13 79.7 84 59.5
CDE05G1646 Ceratophyllum demersum HOM05D003303 ORTHO05D003887 1.5e-13 79.3 81 59.3
ECA246G0415 Erigeron canadensis HOM05D003303 ORTHO05D003887 1.5e-13 79.3 81 56.8
Eucgr.C00336 Eucalyptus grandis HOM05D003303 ORTHO05D003887 1.9e-13 79.0 81 58.0
Prupe.1G478100 Prunus persica HOM05D003303 ORTHO05D003887 1.9e-13 79.0 84 58.3
PGR044G1059 Punica granatum HOM05D003303 ORTHO05D003887 1.9e-13 79.0 83 60.2
Sp6g32280 Schrenkiella parvula HOM05D003303 ORTHO05D003887 1.9e-13 79.0 81 59.3
THA.LOC104799228 Tarenaya hassleriana HOM05D003303 ORTHO05D003887 1.9e-13 79.0 81 56.8
Cc08_g00960 Coffea canephora HOM05D003303 ORTHO05D003887 2.5e-13 78.6 86 60.5
Rhsim02G0198400 Rhododendron simsii HOM05D003303 ORTHO05D003887 2.5e-13 78.6 84 57.1
HPP92_023167 Vanilla planifolia HOM05D003303 ORTHO05D003887 2.5e-13 78.6 82 57.3
ATR1156G058 Amborella trichopoda HOM05D003303 ORTHO05D003887 3.3e-13 78.2 81 56.8
Nn8g39390 Nelumbo nucifera HOM05D003303 ORTHO05D003887 3.3e-13 78.2 81 56.8
Aqoxy7G03733 Aquilegia oxysepala HOM05D003303 ORTHO05D003887 5.6e-13 77.4 81 56.8
Ciclev10009474m.g Citrus clementina HOM05D003303 ORTHO05D003887 5.6e-13 77.4 84 57.1
Nitab4.5_0000447g0060 Nicotiana tabacum HOM05D003303 ORTHO05D003887 5.6e-13 77.4 84 53.6
HanXRQChr08g0234811 Helianthus annuus HOM05D003303 ORTHO05D003887 7.3e-13 77.0 85 52.9
PSO210G5012 Papaver somniferum HOM05D003303 ORTHO05D003887 7.3e-13 77.0 81 56.8
PSO210G7678 Papaver somniferum HOM05D003303 ORTHO05D003887 7.3e-13 77.0 81 56.8
TWI34G1555 Tripterygium wilfordii HOM05D003303 ORTHO05D003887 7.3e-13 77.0 81 55.6
EL10Ac2g02608 Beta vulgaris HOM05D003303 ORTHO05D003887 9.5e-13 76.6 81 53.1
Eucgr.I00800 Eucalyptus grandis HOM05D003303 ORTHO05D003887 9.5e-13 76.6 81 58.0
Zm00001eb342310 Zea mays HOM05D003303 ORTHO05D003887 9.5e-13 76.6 81 56.8
FvH4_2g29460 Fragaria vesca HOM05D003303 ORTHO05D003887 1.2e-12 76.3 81 58.0
FAN27G1304 Fragaria x ananassa HOM05D003303 ORTHO05D003887 1.2e-12 76.3 81 58.0
Nitab4.5_0000268g0060 Nicotiana tabacum HOM05D003303 ORTHO05D003887 1.2e-12 76.3 84 52.4
Os01g0555300 Oryza sativa ssp. japonica HOM05D003303 ORTHO05D003887 1.6e-12 75.9 81 54.3
A03p04940 Brassica napus HOM05D003303 ORTHO05D003887 2.1e-12 75.5 80 55.0
AUR62024894 Chenopodium quinoa HOM05D003303 ORTHO05D003887 2.1e-12 75.5 81 51.9
AUR62030643 Chenopodium quinoa HOM05D003303 ORTHO05D003887 2.1e-12 75.5 81 51.9
SGA_v2.0_scaffold20G09143 Striga asiatica HOM05D003303 ORTHO05D003887 2.1e-12 75.5 84 58.3
Peaxi162Scf00603g00012 Petunia axillaris HOM05D003303 ORTHO05D003887 2.8e-12 75.1 84 54.8
SGA_v2.0_scaffold64G21909 Striga asiatica HOM05D003303 ORTHO05D003887 2.8e-12 75.1 84 58.3
Ah.12g064040 Amaranthus hybridus HOM05D003303 ORTHO05D003887 3.6e-12 74.7 81 53.1
FAN20G0011 Fragaria x ananassa HOM05D003303 ORTHO05D003887 3.6e-12 74.7 81 56.8
Oeu024202.1 Olea europaea HOM05D003303 ORTHO05D003887 8.1e-12 73.6 83 56.6
Hund20355 Selenicereus undatus HOM05D003303 ORTHO05D003887 8.1e-12 73.6 81 50.6
CAN.G340.3 Capsicum annuum HOM05D003303 ORTHO05D003887 1.4e-11 72.8 84 50.0
BcaB01g06298 Brassica carinata HOM05D003303 ORTHO05D003887 2.3e-11 72.0 82 57.3
Lsat_1_v5_gn_5_30500 Lactuca sativa HOM05D003303 ORTHO05D003887 5.2e-11 70.9 80 53.8
PGSC0003DMG400017130 Solanum tuberosum HOM05D003303 ORTHO05D003887 6.8e-11 70.5 84 48.8
Zm00001eb162550 Zea mays HOM05D003303 ORTHO05D003887 6.8e-11 70.5 81 53.1
Sc09g0008410 Simmondsia chinensis HOM05D003303 ORTHO05D003887 1.5e-10 69.3 81 51.9
SEGI_05060 Sequoiadendron giganteum HOM05D003303 ORTHO05D003887 2.0e-10 68.9 81 48.1
CDE05G2985 Ceratophyllum demersum HOM05D003303 ORTHO05D003887 2.6e-10 68.6 45 75.6
Solyc06g036540.1 Solanum lycopersicum HOM05D003303 ORTHO05D003887 8.3e-09 63.5 84 48.8
Sopen06g012300 Solanum pennellii HOM05D003303 ORTHO05D003887 8.3e-09 63.5 84 48.8


User provided reference genes

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