Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G31736 Trifolium pratense HOM05D005273 ORTHO05D006195 1.4e-18 95.1 45 100.0
Medtr4g078370 Medicago truncatula HOM05D005273 ORTHO05D006195 5.5e-18 93.2 45 97.8
Psat7g169200 Pisum sativum HOM05D005273 ORTHO05D006195 5.5e-18 93.2 45 97.8
Ca_18943_v3 Cicer arietinum L. HOM05D005273 ORTHO05D006195 9.3e-18 92.4 45 95.6
VMungo1127G0137 Vigna mungo HOM05D005273 ORTHO05D006195 4.6e-17 90.1 45 93.3
Glyma.12G114500 Glycine max HOM05D005273 ORTHO05D006195 1.3e-16 88.6 45 91.1
Lj3g0011026 Lotus japonicus HOM05D005273 ORTHO05D006195 3.0e-16 87.4 45 91.1
Lj5g0005541 Lotus japonicus HOM05D005273 ORTHO05D006195 3.0e-16 87.4 45 91.1
Phvul.010G107600 Phaseolus vulgaris HOM05D005273 ORTHO05D006195 3.9e-16 87.0 45 88.9
Phvul.011G119600 Phaseolus vulgaris HOM05D005273 ORTHO05D006195 3.9e-16 87.0 45 88.9
Glyma.06G291600 Glycine max HOM05D005273 ORTHO05D006195 6.7e-16 86.3 45 86.7
arahy.Tifrunner.gnm1.ann1.EEV1KR Arachis hypogaea HOM05D005273 ORTHO05D006195 1.5e-15 85.1 45 88.9
arahy.Tifrunner.gnm1.ann1.RDE8QD Arachis hypogaea HOM05D005273 ORTHO05D006195 1.5e-15 85.1 45 88.9
arahy.Tifrunner.gnm1.ann1.YR7R6W Arachis hypogaea HOM05D005273 ORTHO05D006195 1.5e-15 85.1 45 88.9
arahy.Tifrunner.gnm1.ann1.891C6J Arachis hypogaea HOM05D005273 ORTHO05D006195 1.9e-15 84.7 45 88.9
Lalb_Chr03g0027211 Lupinus albus HOM05D005273 ORTHO05D006195 1.9e-15 84.7 45 88.9
CANSAT64G2383 Cannabis sativa HOM05D005273 ORTHO05D006195 5.7e-15 83.2 45 86.7
THA.LOC104814179 Tarenaya hassleriana HOM05D005273 ORTHO05D006195 5.7e-15 83.2 45 86.7
Sc21g0002980 Simmondsia chinensis HOM05D005273 ORTHO05D006195 1.3e-14 82.0 45 82.2
COL.COLO4_33584 Corchorus olitorius HOM05D005273 ORTHO05D006195 1.6e-14 81.6 45 84.4
FvH4_6g26410 Fragaria vesca HOM05D005273 ORTHO05D006195 2.8e-14 80.9 45 84.4
FAN02G4311 Fragaria x ananassa HOM05D005273 ORTHO05D006195 2.8e-14 80.9 45 84.4
Manes.02G045100 Manihot esculenta HOM05D005273 ORTHO05D006195 2.8e-14 80.9 45 82.2
RcHm_v2.0_Chr2g0127911 Rosa chinensis HOM05D005273 ORTHO05D006195 2.8e-14 80.9 45 84.4
THA.LOC104823543 Tarenaya hassleriana HOM05D005273 ORTHO05D006195 2.8e-14 80.9 45 84.4
TAR627G0042 Trochodendron aralioides HOM05D005273 ORTHO05D006195 2.8e-14 80.9 45 84.4
HPP92_004898 Vanilla planifolia HOM05D005273 ORTHO05D006195 2.8e-14 80.9 44 81.8
CANSAT64G2205 Cannabis sativa HOM05D005273 ORTHO05D006195 3.7e-14 80.5 45 82.2
MELO3C009854.2 Cucumis melo HOM05D005273 ORTHO05D006195 3.7e-14 80.5 45 84.4
CsaV3_3G041260 Cucumis sativus L. HOM05D005273 ORTHO05D006195 3.7e-14 80.5 45 84.4
Aqoxy6G00048 Aquilegia oxysepala HOM05D005273 ORTHO05D006195 4.8e-14 80.1 45 80.0
Ciclev10015816m.g Citrus clementina HOM05D005273 ORTHO05D006195 6.2e-14 79.7 45 82.2
Duzib264G0403 Durio zibethinus HOM05D005273 ORTHO05D006195 6.2e-14 79.7 45 82.2
ECA246G2010 Erigeron canadensis HOM05D005273 ORTHO05D006195 6.2e-14 79.7 45 82.2
SalBow1G1167 Salvia bowleyana HOM05D005273 ORTHO05D006195 6.2e-14 79.7 45 82.2
SalBow1G7481 Salvia bowleyana HOM05D005273 ORTHO05D006195 6.2e-14 79.7 45 82.2
SGA_v2.0_scaffold25G10971 Striga asiatica HOM05D005273 ORTHO05D006195 6.2e-14 79.7 45 82.2
Thecc.01G150900 Theobroma cacao HOM05D005273 ORTHO05D006195 6.2e-14 79.7 45 82.2
Thecc.K0007100 Theobroma cacao HOM05D005273 ORTHO05D006195 6.2e-14 79.7 45 82.2
unitig_899.g15313 Utricularia gibba HOM05D005273 ORTHO05D006195 6.2e-14 79.7 45 82.2
AL7G30590 Arabidopsis lyrata HOM05D005273 ORTHO05D006195 8.2e-14 79.3 45 82.2
AT4G22930 Arabidopsis thaliana HOM05D005273 ORTHO05D006195 8.2e-14 79.3 45 82.2
BcaNung01659 Brassica carinata HOM05D005273 ORTHO05D006195 8.2e-14 79.3 45 82.2
A01p14180 Brassica napus HOM05D005273 ORTHO05D006195 8.2e-14 79.3 45 82.2
A03p53890 Brassica napus HOM05D005273 ORTHO05D006195 8.2e-14 79.3 45 82.2
C01p17440 Brassica napus HOM05D000022 ORTHO05D006195 8.2e-14 79.3 45 82.2
C07p52300 Brassica napus HOM05D005273 ORTHO05D006195 8.2e-14 79.3 45 82.2
BolC7t45723H Brassica oleracea HOM05D005273 ORTHO05D006195 8.2e-14 79.3 45 82.2
BraA01t01367Z Brassica rapa HOM05D005273 ORTHO05D006195 8.2e-14 79.3 45 82.2
BraA03t14458Z Brassica rapa HOM05D005273 ORTHO05D006195 8.2e-14 79.3 45 82.2
Carub.0007s1834 Capsella rubella HOM05D005273 ORTHO05D006195 8.2e-14 79.3 45 82.2
CARHR229970 Cardamine hirsuta HOM05D005273 ORTHO05D006195 8.2e-14 79.3 45 82.2
CDE08G0645 Ceratophyllum demersum HOM05D005273 ORTHO05D006195 8.2e-14 79.3 45 82.2
ClCG10G015250 Citrullus lanatus HOM05D005273 ORTHO05D006195 8.2e-14 79.3 45 82.2
Thhalv10025474m.g Eutrema salsugineum HOM05D005273 ORTHO05D006195 8.2e-14 79.3 45 82.2
FAN05G3218 Fragaria x ananassa HOM05D005273 ORTHO05D006195 8.2e-14 79.3 45 82.2
HanXRQChr15g0466031 Helianthus annuus HOM05D005273 ORTHO05D006195 8.2e-14 79.3 45 82.2
Nn1g04120 Nelumbo nucifera HOM05D005273 ORTHO05D006195 8.2e-14 79.3 45 80.0
Sp7g21020 Schrenkiella parvula HOM05D005273 ORTHO05D006195 8.2e-14 79.3 45 82.2
Aa31LG2G13370 Aethionema arabicum HOM05D005273 ORTHO05D006195 1.1e-13 79.0 45 80.0
GSVIVG01020564001 Vitis vinifera HOM05D005273 ORTHO05D006195 1.1e-13 79.0 44 84.1
Gohir.A11G060000 Gossypium hirsutum HOM05D005273 ORTHO05D006195 1.4e-13 78.6 45 80.0
Gohir.D11G064100 Gossypium hirsutum HOM05D005273 ORTHO05D006195 1.4e-13 78.6 45 80.0
Gorai.007G069300 Gossypium raimondii HOM05D005273 ORTHO05D006195 1.4e-13 78.6 45 80.0
Prupe.3G131200 Prunus persica HOM05D005273 ORTHO05D006195 1.4e-13 78.6 45 80.0
Sed0018091 Sechium edule HOM05D005273 ORTHO05D006195 1.4e-13 78.6 45 82.2
Atru.chr6.2972 Acer truncatum HOM05D005273 ORTHO05D006195 1.8e-13 78.2 45 80.0
Cpa.g.sc83.46 Carica papaya HOM05D005273 ORTHO05D006195 1.8e-13 78.2 45 80.0
AUR62011723 Chenopodium quinoa HOM05D005273 ORTHO05D006195 1.8e-13 78.2 45 80.0
AUR62012902 Chenopodium quinoa HOM05D005273 ORTHO05D006195 1.8e-13 78.2 45 80.0
Haze_12807 Corylus avellana HOM05D005273 ORTHO05D006195 1.8e-13 78.2 45 80.0
Duzib147G0196 Durio zibethinus HOM05D005273 ORTHO05D006195 1.8e-13 78.2 45 80.0
Rhsim06G0140600 Rhododendron simsii HOM05D005273 ORTHO05D006195 1.8e-13 78.2 45 80.0
vmacro12316 Vaccinium macrocarpon HOM05D005273 ORTHO05D006195 1.8e-13 78.2 45 80.0
DCAR_013064 Daucus carota HOM05D005273 ORTHO05D006195 2.4e-13 77.8 45 75.6
Hma1.2p1_0002F.1_g002020 Hydrangea macrophylla HOM05D005273 ORTHO05D006195 2.4e-13 77.8 45 80.0
Potri.007G139700 Populus trichocarpa HOM05D005273 ORTHO05D006195 2.4e-13 77.8 45 80.0
PGR142G4354 Punica granatum HOM05D005273 ORTHO05D006195 2.4e-13 77.8 45 80.0
Sabra07G0113000 Salix brachista HOM05D005273 ORTHO05D006195 2.4e-13 77.8 45 80.0
Sabra07G0117800 Salix brachista HOM05D005273 ORTHO05D006195 2.4e-13 77.8 45 80.0
CSS0011944 Camellia sinensis var. sinensis HOM05D005273 ORTHO05D006195 3.1e-13 77.4 45 80.0
CSS0048709 Camellia sinensis var. sinensis HOM05D005273 ORTHO05D006195 3.1e-13 77.4 45 80.0
Carub.0001s3611 Capsella rubella HOM05D005273 ORTHO05D006195 3.1e-13 77.4 45 80.0
Nn1g06518 Nelumbo nucifera HOM05D005273 ORTHO05D006195 3.1e-13 77.4 45 77.8
PSO478G2492 Papaver somniferum HOM05D005273 ORTHO05D006195 3.1e-13 77.4 45 77.8
PSO782G4868 Papaver somniferum HOM05D005273 ORTHO05D006195 3.1e-13 77.4 45 77.8
Peaxi162Scf00112g00113 Petunia axillaris HOM05D005273 ORTHO05D006195 3.1e-13 77.4 45 80.0
Lsat_1_v5_gn_4_66761 Lactuca sativa HOM05D005273 ORTHO05D006195 4.1e-13 77.0 45 77.8
MD09G1233100 Malus domestica HOM05D005273 ORTHO05D006195 4.1e-13 77.0 45 80.0
Ah.11g045620 Amaranthus hybridus HOM05D005273 ORTHO05D006195 5.3e-13 76.6 45 77.8
MSTRG.21306 Avicennia marina HOM05D005273 ORTHO05D006195 5.3e-13 76.6 45 77.8
Cfa014627 Carpinus fangiana HOM05D005273 ORTHO05D006195 5.3e-13 76.6 45 77.8
Migut.D02068 Erythranthe guttata HOM05D005273 ORTHO05D006195 5.3e-13 76.6 45 77.8
Zm00001eb153030 Zea mays HOM05D005273 ORTHO05D006195 5.3e-13 76.6 45 75.6
Pp3c13_8930 Physcomitrium patens HOM05D005273 ORTHO05D006195 6.9e-13 76.3 45 82.2
Hund09652 Selenicereus undatus HOM05D005273 ORTHO05D006195 6.9e-13 76.3 45 77.8
TWI18G0085 Tripterygium wilfordii HOM05D005273 ORTHO05D006195 6.9e-13 76.3 45 73.3
CiPaw.04G127500 Carya illinoinensis HOM05D005273 ORTHO05D006195 9.0e-13 75.9 45 75.6
Lj1C718T2 Lonicera japonica HOM05D005273 ORTHO05D006195 9.0e-13 75.9 45 75.6
SEGI_10566 Sequoiadendron giganteum HOM05D005273 ORTHO05D006195 9.0e-13 75.9 45 80.0
CAN.G411.45 Capsicum annuum HOM05D005273 ORTHO05D006195 1.2e-12 75.5 45 77.8
Nitab4.5_0000437g0040 Nicotiana tabacum HOM05D005273 ORTHO05D006195 1.2e-12 75.5 45 77.8
Solyc02g072105.1 Solanum lycopersicum HOM05D005273 ORTHO05D006195 1.2e-12 75.5 45 77.8
Sopen02g021070 Solanum pennellii HOM05D005273 ORTHO05D006195 1.2e-12 75.5 45 77.8
PGSC0003DMG400028417 Solanum tuberosum HOM05D005273 ORTHO05D006195 1.2e-12 75.5 45 77.8
EL10Ac3g07435 Beta vulgaris HOM05D005273 ORTHO05D006195 1.5e-12 75.1 45 80.0
AUR62011776 Chenopodium quinoa HOM05D005273 ORTHO05D006195 1.5e-12 75.1 45 77.8
AUR62024621 Chenopodium quinoa HOM05D005273 ORTHO05D006195 1.5e-12 75.1 45 77.8
Dinv04937 Davidia involucrata HOM05D005273 ORTHO05D006195 1.5e-12 75.1 45 73.3
Cc06_g20460 Coffea canephora HOM05D005273 ORTHO05D006195 2.0e-12 74.7 45 73.3
Os01g0747500 Oryza sativa ssp. japonica HOM05D005273 ORTHO05D006195 2.0e-12 74.7 45 75.6
QL08p039365 Quercus lobata HOM05D005273 ORTHO05D006195 2.0e-12 74.7 44 79.5
Eucgr.K01040 Eucalyptus grandis HOM05D005273 ORTHO05D006195 2.6e-12 74.3 45 75.6
AagrBONN_evm.TU.Sc2ySwM_117.50 Anthoceros agrestis HOM05D005273 ORTHO05D006195 4.5e-12 73.6 45 77.8
Nitab4.5_0006070g0020 Nicotiana tabacum HOM05D005273 ORTHO05D006195 5.8e-12 73.2 45 75.6
ATR0737G119 Amborella trichopoda HOM05D005273 ORTHO05D006195 1.0e-11 72.4 45 71.1
CSS0013056 Camellia sinensis var. sinensis HOM05D005273 ORTHO05D006195 1.3e-11 72.0 44 77.3
Mapoly0001s0029 Marchantia polymorpha HOM05D005273 ORTHO05D006195 1.3e-11 72.0 45 77.8
QL08p039454 Quercus lobata HOM05D005273 ORTHO05D006195 1.7e-11 71.6 45 73.3
SMO347G0496 Selaginella moellendorffii HOM05D005273 ORTHO05D006195 1.7e-11 71.6 45 75.6
MBI07_g30188_MAGBIO Magnolia biondii HOM05D005273 ORTHO05D006195 2.9e-11 70.9 38 86.8
SHI10390 Sapria himalayana HOM05D005273 ORTHO05D006195 2.9e-11 70.9 45 71.1
TWI59G0041 Tripterygium wilfordii HOM05D005273 ORTHO05D006195 2.9e-11 70.9 45 71.1
EL10Ac9g21222 Beta vulgaris HOM05D005273 ORTHO05D006195 2.5e-10 67.8 44 68.2
Lalb_Chr09g0333161 Lupinus albus HOM05D005273 ORTHO05D006195 1.1e-07 58.9 32 84.4
CBR_g21229 Chara braunii HOM05D005273 ORTHO05D006195 1.6e-06 55.1 45 60.0
AUR62036776 Chenopodium quinoa HOM05D005273 ORTHO05D006195 2.2e-06 54.7 45 64.4
PRCOL_00003989 Prasinoderma coloniale HOM05D005273 ORTHO05D006195 2.8e-06 54.3 45 57.8


User provided reference genes

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