Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G31667 Trifolium pratense HOM05D005722 ORTHO05D007934 0.0e+00 1107.8 566 100.0
Medtr7g102810 Medicago truncatula HOM05D005722 ORTHO05D007934 3.1e-275 951.4 552 89.5
Psat3g038760 Pisum sativum HOM05D005722 ORTHO05D007934 1.2e-274 949.5 549 88.9
Lj1g0006800 Lotus japonicus HOM05D005722 ORTHO05D007934 6.0e-247 857.4 568 79.2
Lalb_Chr25g0288811 Lupinus albus HOM05D005722 ORTHO05D007934 8.4e-233 810.4 570 75.3
Duzib128G0866 Durio zibethinus HOM05D005722 ORTHO05D007934 1.0e-230 803.5 556 73.9
Glyma.10G063100 Glycine max HOM05D005722 ORTHO05D007934 1.0e-230 803.5 573 73.8
Glyma.13G147700 Glycine max HOM05D005722 ORTHO05D007934 1.3e-230 803.1 573 72.4
Lalb_Chr02g0155431 Lupinus albus HOM05D005722 ORTHO05D007934 2.3e-230 802.4 543 76.1
Ca_04564_v3 Cicer arietinum L. HOM05D005722 ORTHO05D007934 3.0e-230 802.0 512 77.3
COL.COLO4_22250 Corchorus olitorius HOM05D005722 ORTHO05D007934 6.7e-230 800.8 487 81.5
FvH4_6g17170 Fragaria vesca HOM05D005722 ORTHO05D007934 2.5e-229 798.9 494 79.6
Lj5g0013810 Lotus japonicus HOM05D005722 ORTHO05D007934 2.5e-229 798.9 563 72.1
Medtr1g062130 Medicago truncatula HOM05D005722 ORTHO05D007934 5.7e-229 797.7 567 72.8
FAN05G1451 Fragaria x ananassa HOM05D005722 ORTHO05D007934 9.6e-229 797.0 566 71.7
FAN05G4610 Fragaria x ananassa HOM05D005722 ORTHO05D007934 1.6e-228 796.2 566 71.6
Hma1.2p1_0547F.1_g176330 Hydrangea macrophylla HOM05D005722 ORTHO05D007934 1.6e-228 796.2 527 75.9
Thecc.05G075200 Theobroma cacao HOM05D005722 ORTHO05D007934 3.7e-228 795.0 543 74.6
Cfa016476 Carpinus fangiana HOM05D005722 ORTHO05D007934 6.2e-228 794.3 499 80.0
TAR623G1222 Trochodendron aralioides HOM05D005722 ORTHO05D007934 1.1e-227 793.5 561 73.8
Gohir.A09G143300 Gossypium hirsutum HOM05D005722 ORTHO05D007934 1.4e-227 793.1 559 72.5
Atru.chr8.1708 Acer truncatum HOM05D005722 ORTHO05D007934 2.4e-227 792.3 566 71.7
VMungo0720G2103 Vigna mungo HOM05D005722 ORTHO05D007934 2.4e-227 792.3 509 77.2
arahy.Tifrunner.gnm1.ann1.D7QF3J Arachis hypogaea HOM05D005722 ORTHO05D007934 5.3e-227 791.2 555 73.3
arahy.Tifrunner.gnm1.ann1.P0W3IN Arachis hypogaea HOM05D005722 ORTHO05D007934 5.3e-227 791.2 555 73.3
Potri.006G119500 Populus trichocarpa HOM05D005722 ORTHO05D007934 6.9e-227 790.8 560 72.5
Phvul.007G226300 Phaseolus vulgaris HOM05D005722 ORTHO05D007934 2.6e-226 788.9 569 71.9
Gorai.006G160000 Gossypium raimondii HOM05D005722 ORTHO05D007934 4.5e-226 788.1 569 71.5
Migut.J00472 Erythranthe guttata HOM05D005722 ORTHO05D007934 5.8e-226 787.7 477 81.3
RcHm_v2.0_Chr3g0471261 Rosa chinensis HOM05D005722 ORTHO05D007934 5.8e-226 787.7 567 70.9
Prupe.7G123300 Prunus persica HOM05D005722 ORTHO05D007934 2.2e-225 785.8 569 72.1
MD12G1103200 Malus domestica HOM05D005722 ORTHO05D007934 6.5e-225 784.3 571 70.4
Sabra06G0094100 Salix brachista HOM05D005722 ORTHO05D007934 4.2e-224 781.6 504 77.2
PSO063G5110 Papaver somniferum HOM05D005722 ORTHO05D007934 5.5e-224 781.2 571 70.8
CiPaw.09G004900 Carya illinoinensis HOM05D005722 ORTHO05D007934 7.2e-224 780.8 501 78.6
vmacro23004 Vaccinium macrocarpon HOM05D005722 ORTHO05D007934 9.3e-224 780.4 506 77.7
Nn2g13890 Nelumbo nucifera HOM05D005722 ORTHO05D007934 2.1e-223 779.2 558 72.6
PSO339G6299 Papaver somniferum HOM05D005722 ORTHO05D007934 3.5e-223 778.5 571 70.6
Cc06_g04740 Coffea canephora HOM05D005722 ORTHO05D007934 4.6e-223 778.1 489 78.3
TPR.G22453 Trifolium pratense HOM05D005722 ORTHO05D007934 4.6e-223 778.1 527 74.6
CSS0018899 Camellia sinensis var. sinensis HOM05D005722 ORTHO05D007934 6.1e-223 777.7 572 70.8
QL07p041452 Quercus lobata HOM05D005722 ORTHO05D007934 6.1e-223 777.7 567 71.1
Rhsim03G0086400 Rhododendron simsii HOM05D005722 ORTHO05D007934 5.1e-222 774.6 566 71.0
Cpa.g.sc5.129 Carica papaya HOM05D005722 ORTHO05D007934 1.5e-221 773.1 485 77.7
CSS0022139 Camellia sinensis var. sinensis HOM05D005722 ORTHO05D007934 2.5e-221 772.3 493 77.7
Psat6g077240 Pisum sativum HOM05D005722 ORTHO05D007934 4.3e-221 771.5 565 69.9
Peaxi162Scf00138g00041 Petunia axillaris HOM05D005722 ORTHO05D007934 5.7e-221 771.2 489 77.7
Manes.09G048478 Manihot esculenta HOM05D005722 ORTHO05D007934 2.2e-220 769.2 562 70.8
AUR62026979 Chenopodium quinoa HOM05D005722 ORTHO05D007934 2.4e-219 765.8 492 77.2
AUR62042706 Chenopodium quinoa HOM05D005722 ORTHO05D007934 6.9e-219 764.2 494 76.9
TWI74G0410 Tripterygium wilfordii HOM05D005722 ORTHO05D007934 9.0e-219 763.8 563 70.2
Ah.08g211270 Amaranthus hybridus HOM05D005722 ORTHO05D007934 4.5e-218 761.5 574 70.7
MSTRG.19206 Avicennia marina HOM05D005722 ORTHO05D007934 4.5e-218 761.5 557 72.0
EL10Ac7g16706 Beta vulgaris HOM05D005722 ORTHO05D007934 7.7e-218 760.8 479 78.9
CANSAT56G0690 Cannabis sativa HOM05D005722 ORTHO05D007934 1.7e-217 759.6 554 70.2
Thhalv10015725m.g Eutrema salsugineum HOM05D005722 ORTHO05D007934 3.2e-216 755.4 490 76.5
Aqoxy1G01041 Aquilegia oxysepala HOM05D005722 ORTHO05D007934 9.4e-216 753.8 547 71.3
Carub.0006s0238 Capsella rubella HOM05D005722 ORTHO05D007934 2.1e-215 752.7 583 67.2
PGSC0003DMG400003879 Solanum tuberosum HOM05D005722 ORTHO05D007934 3.6e-215 751.9 480 77.5
DCAR_015016 Daucus carota HOM05D005722 ORTHO05D007934 7.9e-215 750.7 471 77.9
Ciclev10011424m.g Citrus clementina HOM05D005722 ORTHO05D007934 1.0e-214 750.4 535 71.8
CAN.G1038.3 Capsicum annuum HOM05D005722 ORTHO05D007934 1.8e-214 749.6 556 69.1
C03p01590 Brassica napus HOM05D005722 ORTHO05D007934 3.0e-214 748.8 483 77.2
Sopen09g003380 Solanum pennellii HOM05D005722 ORTHO05D007934 3.9e-214 748.4 480 76.5
Aa31LG1G21640 Aethionema arabicum HOM05D005722 ORTHO05D007934 5.1e-214 748.0 593 66.1
A03p01230 Brassica napus HOM05D005722 ORTHO05D007934 1.1e-213 746.9 483 76.8
BolC3t12711H Brassica oleracea HOM05D005722 ORTHO05D007934 1.1e-213 746.9 483 77.0
Ca_30109_v3 Cicer arietinum L. HOM05D005722 ORTHO05D007934 1.1e-213 746.9 410 90.5
Nitab4.5_0004731g0050 Nicotiana tabacum HOM05D005722 ORTHO05D007934 1.1e-213 746.9 492 75.0
PGR004G2571 Punica granatum HOM05D005722 ORTHO05D007934 1.1e-213 746.9 569 67.8
CARHR209770 Cardamine hirsuta HOM05D005722 ORTHO05D007934 1.5e-213 746.5 545 70.5
BraA03t09503Z Brassica rapa HOM05D005722 ORTHO05D007934 2.0e-213 746.1 483 76.6
AT5G03555 Arabidopsis thaliana HOM05D005722 ORTHO05D007934 3.3e-213 745.3 481 76.3
SGA_v2.0_scaffold75G24819 Striga asiatica HOM05D005722 ORTHO05D007934 4.3e-213 745.0 477 76.9
THA.LOC104816667 Tarenaya hassleriana HOM05D005722 ORTHO05D007934 1.3e-212 743.4 469 77.8
Lsat_1_v5_gn_2_20401 Lactuca sativa HOM05D005722 ORTHO05D007934 2.8e-212 742.3 476 76.1
Sp6g39190 Schrenkiella parvula HOM05D005722 ORTHO05D007934 1.8e-211 739.6 567 69.0
AL6G13040 Arabidopsis lyrata HOM05D005722 ORTHO05D007934 3.1e-211 738.8 481 75.7
MBI18_g39612_MAGBIO Magnolia biondii HOM05D005722 ORTHO05D007934 3.4e-210 735.3 479 74.1
ECA238G3369 Erigeron canadensis HOM05D005722 ORTHO05D007934 1.7e-209 733.0 563 67.9
Solyc09g008550.4 Solanum lycopersicum HOM05D005722 ORTHO05D007934 3.8e-209 731.9 462 77.3
HanXRQChr14g0432851 Helianthus annuus HOM05D005722 ORTHO05D007934 5.0e-209 731.5 544 69.3
Sc20g0005780 Simmondsia chinensis HOM05D005722 ORTHO05D007934 8.5e-209 730.7 491 74.1
Haze_19473 Corylus avellana HOM05D005722 ORTHO05D007934 1.1e-208 730.3 443 81.7
SalBow3G1081 Salvia bowleyana HOM05D005722 ORTHO05D007934 1.4e-208 729.9 470 76.8
SalBow3G1392 Salvia bowleyana HOM05D005722 ORTHO05D007934 2.5e-208 729.2 470 76.6
Gohir.D09G139500 Gossypium hirsutum HOM05D005722 ORTHO05D007934 4.2e-208 728.4 502 74.1
Gohir.D09G139600 Gossypium hirsutum HOM05D005722 ORTHO05D007934 6.1e-207 724.5 475 74.1
Gorai.006G160100 Gossypium raimondii HOM05D005722 ORTHO05D007934 6.1e-207 724.5 475 74.1
Gohir.A09G143500 Gossypium hirsutum HOM05D005722 ORTHO05D007934 1.4e-206 723.4 475 74.1
ClCG10G019670 Citrullus lanatus HOM05D005722 ORTHO05D007934 5.7e-205 718.0 479 72.4
unitig_578.g15784 Utricularia gibba HOM05D005722 ORTHO05D007934 1.1e-203 713.8 498 69.9
FAN14G5091 Fragaria x ananassa HOM05D005722 ORTHO05D007934 4.5e-202 708.4 437 79.4
FAN02G1363 Fragaria x ananassa HOM05D005722 ORTHO05D007934 5.0e-201 704.9 447 78.1
MELO3C009405.2 Cucumis melo HOM05D005722 ORTHO05D007934 6.5e-201 704.5 560 64.6
CsaV3_3G036500 Cucumis sativus L. HOM05D005722 ORTHO05D007934 9.4e-200 700.7 506 69.8
ATR0009G019 Amborella trichopoda HOM05D005722 ORTHO05D007934 2.3e-198 696.0 497 68.6
Sed0005717 Sechium edule HOM05D005722 ORTHO05D007934 1.5e-197 693.3 471 72.0
Nitab4.5_0003906g0050 Nicotiana tabacum HOM05D005722 ORTHO05D007934 6.5e-193 677.9 506 68.8
MBI18_g31623_MAGBIO Magnolia biondii HOM05D005722 ORTHO05D007934 1.6e-186 656.8 498 65.3
MBI18_g39457_MAGBIO Magnolia biondii HOM05D005722 ORTHO05D007934 4.5e-186 655.2 498 65.1
MBI18_g19054_MAGBIO Magnolia biondii HOM05D005722 ORTHO05D007934 7.7e-186 654.4 481 66.3
SEGI_35570 Sequoiadendron giganteum HOM05D005722 ORTHO05D007934 2.9e-185 652.5 487 63.2
Dinv35829 Davidia involucrata HOM05D005722 ORTHO05D007934 6.3e-180 634.8 478 69.0
Eucgr.A01597 Eucalyptus grandis HOM05D005722 ORTHO05D007934 2.4e-179 632.9 563 60.6
Cfa016468 Carpinus fangiana HOM05D005722 ORTHO05D007934 1.7e-177 626.7 448 72.5
Os02g0666700 Oryza sativa ssp. japonica HOM05D005722 ORTHO05D007934 4.7e-175 618.6 458 64.8
GSVIVG01033705001 Vitis vinifera HOM05D005722 ORTHO05D007934 1.2e-173 614.0 541 61.4
HPP92_025568 Vanilla planifolia HOM05D005722 ORTHO05D007934 5.7e-173 611.7 461 64.9
Zm00001eb249990 Zea mays HOM05D005722 ORTHO05D007934 1.7e-172 610.1 477 61.6
Cc06_g04750 Coffea canephora HOM05D005722 ORTHO05D007934 5.9e-170 601.7 478 63.4
CDE08G1312 Ceratophyllum demersum HOM05D005722 ORTHO05D007934 2.6e-165 586.3 458 66.6
Pp3c14_20990 Physcomitrium patens HOM05D005722 ORTHO05D007934 4.7e-159 565.5 472 57.4
Pp3c1_30640 Physcomitrium patens HOM05D005722 ORTHO05D007934 1.4e-158 563.9 482 56.4
Mapoly0002s0120 Marchantia polymorpha HOM05D005722 ORTHO05D007934 3.1e-158 562.8 478 55.4
SMO115G0026 Selaginella moellendorffii HOM05D005722 ORTHO05D007934 1.1e-155 554.3 475 57.3
Actinidia26637 Actinidia chinensis HOM05D005722 ORTHO05D007934 7.6e-149 531.6 447 62.9
Cre09.g389356 Chlamydomonas reinhardtii HOM05D005722 ORTHO05D007934 1.9e-139 500.4 489 49.9
Actinidia28931 Actinidia chinensis HOM05D005722 ORTHO05D007934 9.3e-139 498.0 372 70.2
Lj2P123T37 Lonicera japonica HOM05D005722 ORTHO05D007934 2.0e-133 480.3 321 75.1
Sc20g0005800 Simmondsia chinensis HOM05D005722 ORTHO05D007934 3.9e-129 466.1 321 72.9
MCO11G702 Micromonas commoda HOM05D005722 ORTHO05D007934 3.8e-124 449.5 489 47.2
PRCOL_00006021 Prasinoderma coloniale HOM05D005722 ORTHO05D007934 7.6e-117 425.2 501 44.1
Haze_19472 Corylus avellana HOM05D005722 ORTHO05D007934 1.8e-70 271.2 163 81.0
Cfa025019 Carpinus fangiana HOM05D005722 ORTHO05D123305 3.5e-61 240.4 521 30.7
Haze_02843 Corylus avellana HOM05D005722 ORTHO05D029153 3.4e-56 223.8 138 79.7
Sc20g0005790 Simmondsia chinensis HOM05D005722 ORTHO05D029153 1.1e-41 175.6 102 80.4
TPR.G39511 Trifolium pratense HOM05D005722 ORTHO05D029153 5.6e-35 153.3 72 100.0
Pp3s34_270 Physcomitrium patens HOM05D005722 ORTHO05D317165 4.7e-34 150.2 430 26.3
Lsat_1_v5_gn_4_152401 Lactuca sativa HOM05D005722 ORTHO05D007934 2.9e-23 114.4 80 76.2
FAN14G5603 Fragaria x ananassa HOM05D005722 ORTHO05D029153 5.8e-16 90.1 56 78.6
MCO11G808 Micromonas commoda HOM05D005722 ORTHO05D268580 9.9e-16 89.4 424 23.8
MCO10G252 Micromonas commoda HOM05D005722 ORTHO05D270642 3.9e-12 77.4 441 25.2
Cfa016469 Carpinus fangiana HOM05D005722 ORTHO05D125356 2.4e-06 58.2 28 92.9


User provided reference genes

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