Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G31663 Trifolium pratense HOM05D004039 ORTHO05D004573 2.0e-75 285.8 155 100.0
Psat3g089920 Pisum sativum HOM05D004039 ORTHO05D004573 8.3e-58 227.3 156 76.3
Psat3g090520 Pisum sativum HOM05D004039 ORTHO05D004573 1.2e-56 223.4 162 74.7
Medtr7g084740 Medicago truncatula HOM05D004039 ORTHO05D004573 3.5e-56 221.9 169 74.6
Psat3g090560 Pisum sativum HOM05D004039 ORTHO05D004573 7.3e-54 214.2 146 78.1
Medtr7g084710 Medicago truncatula HOM05D004039 ORTHO05D004573 1.6e-53 213.0 162 72.2
TPR.G31659 Trifolium pratense HOM05D004039 ORTHO05D004573 4.9e-50 201.4 162 74.7
Medtr7g084720 Medicago truncatula HOM05D004039 ORTHO05D004573 6.4e-50 201.1 156 71.8
Ca_08235_v3 Cicer arietinum L. HOM05D004039 ORTHO05D004573 8.4e-50 200.7 162 72.2
Lalb_Chr14g0364131 Lupinus albus HOM05D004039 ORTHO05D004573 6.4e-42 174.5 163 60.7
Phvul.001G098500 Phaseolus vulgaris HOM05D004039 ORTHO05D004573 1.9e-41 172.9 160 60.6
Glyma.19G106500 Glycine max HOM05D004039 ORTHO05D004573 3.2e-41 172.2 163 59.5
Glyma.16G045200 Glycine max HOM05D004039 ORTHO05D004573 2.1e-40 169.5 161 59.6
Lj1g0002386 Lotus japonicus HOM05D004039 ORTHO05D004573 1.6e-37 159.8 155 59.4
VMungo1302G0001 Vigna mungo HOM05D004039 ORTHO05D004573 3.6e-37 158.7 161 59.0
Lalb_Chr24g0402991 Lupinus albus HOM05D004039 ORTHO05D004573 1.5e-35 153.3 165 53.3
Phvul.004G067800 Phaseolus vulgaris HOM05D004039 ORTHO05D004573 6.5e-26 121.3 178 44.4
Lalb_Chr21g0317001 Lupinus albus HOM05D004039 ORTHO05D004573 3.5e-24 115.5 158 46.2
Glyma.02G068200 Glycine max HOM05D004039 ORTHO05D004573 1.3e-23 113.6 199 41.2
Thecc.04G052000 Theobroma cacao HOM05D004039 ORTHO05D004573 1.3e-21 107.1 166 45.8
QL02p068241 Quercus lobata HOM05D004039 ORTHO05D004573 2.1e-21 106.3 170 44.7
Potri.014G140000 Populus trichocarpa HOM05D004039 ORTHO05D004573 1.1e-20 104.0 166 41.6
Manes.11G073200 Manihot esculenta HOM05D004039 ORTHO05D004573 1.8e-20 103.2 176 43.2
Haze_14987 Corylus avellana HOM05D004039 ORTHO05D004573 4.0e-20 102.1 159 42.8
Ah.16g104320 Amaranthus hybridus HOM05D004039 ORTHO05D004573 1.5e-19 100.1 160 40.0
EL10Ac2g04246 Beta vulgaris HOM05D004039 ORTHO05D004573 7.6e-19 97.8 128 45.3
Sabra14G0105500 Salix brachista HOM05D000032 ORTHO05D009383 1.3e-18 97.1 167 41.9
COL.COLO4_13404 Corchorus olitorius HOM05D004039 ORTHO05D004573 2.2e-18 96.3 159 42.8
Cpa.g.sc70.36 Carica papaya HOM05D004039 ORTHO05D004573 2.9e-18 95.9 83 57.8
PGR042G1501 Punica granatum HOM05D004039 ORTHO05D004573 3.8e-18 95.5 173 41.0
AUR62031493 Chenopodium quinoa HOM05D004039 ORTHO05D004573 1.4e-17 93.6 120 47.5
AUR62012365 Chenopodium quinoa HOM05D004039 ORTHO05D004573 2.5e-17 92.8 124 45.2
GSVIVG01032947001 Vitis vinifera HOM05D004039 ORTHO05D004573 2.5e-17 92.8 156 42.9
Manes.08G099400 Manihot esculenta HOM05D004039 ORTHO05D004573 9.3e-17 90.9 150 42.0
MBI07_g42011_MAGBIO Magnolia biondii HOM05D004039 ORTHO05D004573 1.2e-16 90.5 112 49.1
Manes.04G096800 Manihot esculenta HOM05D004039 ORTHO05D004573 1.2e-16 90.5 157 39.5
RcHm_v2.0_Chr4g0428421 Rosa chinensis HOM05D004039 ORTHO05D004573 1.2e-16 90.5 157 36.9
Ciclev10016691m.g Citrus clementina HOM05D004039 ORTHO05D004573 1.6e-16 90.1 123 46.3
BraA09t36066Z Brassica rapa HOM05D004039 ORTHO05D004573 2.1e-16 89.7 155 41.3
CiPaw.06G111200 Carya illinoinensis HOM05D004039 ORTHO05D004573 2.1e-16 89.7 165 38.2
Gohir.A12G141800 Gossypium hirsutum HOM05D004039 ORTHO05D004573 2.1e-16 89.7 168 40.5
Gohir.D12G146700 Gossypium hirsutum HOM05D004039 ORTHO05D004573 2.1e-16 89.7 168 40.5
BolC9t53384H Brassica oleracea HOM05D004039 ORTHO05D004573 2.7e-16 89.4 155 40.6
BcaC04g23799 Brassica carinata HOM05D004039 ORTHO05D004573 3.5e-16 89.0 155 40.6
TWI75G0895 Tripterygium wilfordii HOM05D004039 ORTHO05D004573 3.5e-16 89.0 148 41.9
TAR374G0420 Trochodendron aralioides HOM05D004039 ORTHO05D004573 3.5e-16 89.0 151 41.1
Duzib187G1305 Durio zibethinus HOM05D004039 ORTHO05D004573 4.6e-16 88.6 78 57.7
MD17G1003900 Malus domestica HOM05D004039 ORTHO05D004573 4.6e-16 88.6 73 63.0
A02p37190 Brassica napus HOM05D004039 ORTHO05D004573 6.1e-16 88.2 158 41.1
MELO3C026747.2 Cucumis melo HOM05D004039 ORTHO05D004573 6.1e-16 88.2 166 38.6
Eucgr.B03568 Eucalyptus grandis HOM05D004039 ORTHO05D004573 6.1e-16 88.2 155 43.9
Oeu010264.1 Olea europaea HOM05D004039 ORTHO05D004573 6.1e-16 88.2 157 36.3
GSVIVG01001118001 Vitis vinifera HOM05D004039 ORTHO05D011171 6.1e-16 88.2 104 51.9
Cfa007136 Carpinus fangiana HOM05D004039 ORTHO05D004573 7.9e-16 87.8 155 41.9
FAN17G1354 Fragaria x ananassa HOM05D004039 ORTHO05D004573 1.0e-15 87.4 157 35.7
Gorai.008G157900 Gossypium raimondii HOM05D004039 ORTHO05D004573 1.8e-15 86.7 172 39.5
BcaC04g24246 Brassica carinata HOM05D004039 ORTHO05D004573 3.0e-15 85.9 101 47.5
Sed0004494 Sechium edule HOM05D004039 ORTHO05D004573 3.0e-15 85.9 155 41.3
A09p04290 Brassica napus HOM05D004039 ORTHO05D004573 3.9e-15 85.5 147 41.5
Cfa009471 Carpinus fangiana HOM05D004039 ORTHO05D004573 3.9e-15 85.5 154 42.9
BcaB04g19545 Brassica carinata HOM05D004039 ORTHO05D004573 5.1e-15 85.1 156 39.1
THA.LOC104827510 Tarenaya hassleriana HOM05D004039 ORTHO05D004573 5.1e-15 85.1 160 38.8
C09p04550 Brassica napus HOM05D004039 ORTHO05D004573 6.7e-15 84.7 155 38.1
CSS0018669 Camellia sinensis var. sinensis HOM05D004039 ORTHO05D004573 6.7e-15 84.7 171 40.4
Ciclev10030001m.g Citrus clementina HOM05D004039 ORTHO05D004573 6.7e-15 84.7 159 39.0
PSO478G3045 Papaver somniferum HOM05D004039 ORTHO05D004573 6.7e-15 84.7 140 42.9
CAN.G1588.13 Capsicum annuum HOM05D004039 ORTHO05D004573 8.7e-15 84.3 160 36.2
CsaV3_3G032870 Cucumis sativus L. HOM05D004039 ORTHO05D004573 8.7e-15 84.3 125 43.2
FvH4_4g22190 Fragaria vesca HOM05D004039 ORTHO05D004573 8.7e-15 84.3 157 34.4
PSO017G5432 Papaver somniferum HOM05D004039 ORTHO05D004573 8.7e-15 84.3 140 42.1
Potri.003G160300 Populus trichocarpa HOM05D004039 ORTHO05D004573 8.7e-15 84.3 154 42.2
Prupe.1G211600 Prunus persica HOM05D004039 ORTHO05D004573 8.7e-15 84.3 155 37.4
Sopen09g034240 Solanum pennellii HOM05D004039 ORTHO05D004573 1.1e-14 84.0 160 36.9
Thhalv10005412m.g Eutrema salsugineum HOM05D004039 ORTHO05D004573 1.5e-14 83.6 158 38.0
SHI11395 Sapria himalayana HOM05D004039 ORTHO05D004573 1.5e-14 83.6 156 40.4
BraA02t08705Z Brassica rapa HOM05D004039 ORTHO05D004573 1.9e-14 83.2 158 38.0
ClCG10G013010 Citrullus lanatus HOM05D004039 ORTHO05D004573 1.9e-14 83.2 166 36.1
Haze_12527 Corylus avellana HOM05D004039 ORTHO05D004573 1.9e-14 83.2 154 38.3
FAN07G2708 Fragaria x ananassa HOM05D004039 ORTHO05D004573 1.9e-14 83.2 157 34.4
MBI11_g23197_MAGBIO Magnolia biondii HOM05D004039 ORTHO05D004573 1.9e-14 83.2 113 47.8
MD13G1134000 Malus domestica HOM05D004039 ORTHO05D004573 1.9e-14 83.2 156 38.5
Nitab4.5_0019080g0010 Nicotiana tabacum HOM05D004039 ORTHO05D004573 1.9e-14 83.2 161 37.9
Atru.chr12.1473 Acer truncatum HOM05D004039 ORTHO05D004573 2.5e-14 82.8 156 38.5
BolC7t44401H Brassica oleracea HOM05D004039 ORTHO05D004573 2.5e-14 82.8 158 38.0
Atru.chr6.2731 Acer truncatum HOM05D004039 ORTHO05D004573 3.3e-14 82.4 165 43.6
C03p07240 Brassica napus HOM05D004039 ORTHO05D004573 3.3e-14 82.4 101 47.5
BolC3t13225H Brassica oleracea HOM05D004039 ORTHO05D004573 3.3e-14 82.4 101 47.5
BraA10t44513Z Brassica rapa HOM05D004039 ORTHO05D004573 3.3e-14 82.4 101 48.5
Peaxi162Scf00047g00153 Petunia axillaris HOM05D004039 ORTHO05D004573 3.3e-14 82.4 156 37.2
Sp2g18420 Schrenkiella parvula HOM05D004039 ORTHO05D004573 3.3e-14 82.4 120 44.2
Sp6g30120 Schrenkiella parvula HOM05D004039 ORTHO05D004573 4.3e-14 82.0 109 45.9
Solyc09g091270.3 Solanum lycopersicum HOM05D004039 ORTHO05D004573 4.3e-14 82.0 161 37.3
Aa31LG3G14220 Aethionema arabicum HOM05D004039 ORTHO05D004573 5.7e-14 81.6 157 39.5
C07p38820 Brassica napus HOM05D004039 ORTHO05D004573 5.7e-14 81.6 120 44.2
QL03p048351 Quercus lobata HOM05D004039 ORTHO05D004573 5.7e-14 81.6 155 37.4
PGSC0003DMG400011591 Solanum tuberosum HOM05D004039 ORTHO05D004573 7.4e-14 81.3 159 36.5
AT5G13880 Arabidopsis thaliana HOM05D004039 ORTHO05D004573 9.7e-14 80.9 138 40.6
BcaC04g19071 Brassica carinata HOM05D004039 ORTHO05D004573 9.7e-14 80.9 101 46.5
C09p63220 Brassica napus HOM05D004039 ORTHO05D004573 9.7e-14 80.9 101 46.5
BolC9t59158H Brassica oleracea HOM05D004039 ORTHO05D004573 9.7e-14 80.9 101 46.5
A06p39450 Brassica napus HOM05D004039 ORTHO05D004573 1.3e-13 80.5 120 43.3
BraA06t26860Z Brassica rapa HOM05D004039 ORTHO05D004573 1.3e-13 80.5 120 43.3
BcaC03g17621 Brassica carinata HOM05D004039 ORTHO05D004573 1.6e-13 80.1 160 37.5
C02p56210 Brassica napus HOM05D004039 ORTHO05D004573 1.6e-13 80.1 160 37.5
BolC2t11677H Brassica oleracea HOM05D004039 ORTHO05D004573 1.6e-13 80.1 160 37.5
HPP92_025084 Vanilla planifolia HOM05D004039 ORTHO05D004573 1.6e-13 80.1 161 36.6
AT5G47920 Arabidopsis thaliana HOM05D004039 ORTHO05D004573 2.2e-13 79.7 121 43.8
COL.COLO4_07108 Corchorus olitorius HOM05D004039 ORTHO05D004573 2.2e-13 79.7 157 36.9
BcaC06g30835 Brassica carinata HOM05D004039 ORTHO05D004573 2.8e-13 79.3 158 38.0
TWI12G1264 Tripterygium wilfordii HOM05D004039 ORTHO05D004573 2.8e-13 79.3 152 44.1
A03p06250 Brassica napus HOM05D004039 ORTHO05D004573 3.7e-13 79.0 101 47.5
BraA03t09957Z Brassica rapa HOM05D004039 ORTHO05D004573 3.7e-13 79.0 101 47.5
Nitab4.5_0002182g0030 Nicotiana tabacum HOM05D004039 ORTHO05D004573 3.7e-13 79.0 101 47.5
Sabra03G0116500 Salix brachista HOM05D004039 ORTHO05D004573 3.7e-13 79.0 155 41.3
Thecc.01G239800 Theobroma cacao HOM05D004039 ORTHO05D004573 4.8e-13 78.6 86 51.2
Eucgr.G01911 Eucalyptus grandis HOM05D004039 ORTHO05D004573 6.3e-13 78.2 111 43.2
BcaB07g29998 Brassica carinata HOM05D004039 ORTHO05D004573 8.2e-13 77.8 158 36.1
THA.LOC104801433 Tarenaya hassleriana HOM05D004039 ORTHO05D004573 8.2e-13 77.8 160 37.5
A10p24480 Brassica napus HOM05D004039 ORTHO05D004573 1.1e-12 77.4 102 46.1
MD16G1144600 Malus domestica HOM05D004039 ORTHO05D004573 1.1e-12 77.4 159 37.1
ECA248G3450 Erigeron canadensis HOM05D000009 ORTHO05D000008 1.4e-12 77.0 93 49.5
Sabra01G0049400 Salix brachista HOM05D004039 ORTHO05D004573 1.4e-12 77.0 152 38.8
Aqoxy3G01771 Aquilegia oxysepala HOM05D004039 ORTHO05D004573 1.8e-12 76.6 73 60.3
CARHR291780 Cardamine hirsuta HOM05D004039 ORTHO05D004573 1.8e-12 76.6 105 43.8
Carub.0008s0748 Capsella rubella HOM05D004039 ORTHO05D004573 2.4e-12 76.3 121 43.0
Sc11g0000030 Simmondsia chinensis HOM05D004039 ORTHO05D004573 2.4e-12 76.3 86 51.2
Eucgr.I01568 Eucalyptus grandis HOM05D004039 ORTHO05D004573 4.1e-12 75.5 76 57.9
ATR0582G327 Amborella trichopoda HOM05D004039 ORTHO05D004573 5.3e-12 75.1 143 40.6
AL8G19920 Arabidopsis lyrata HOM05D004039 ORTHO05D004573 5.3e-12 75.1 120 42.5
CANSAT64G1067 Cannabis sativa HOM05D004039 ORTHO05D004573 5.3e-12 75.1 169 36.7
Carub.0006s1207 Capsella rubella HOM05D004039 ORTHO05D004573 5.3e-12 75.1 65 60.0
Cc02_g30640 Coffea canephora HOM05D004039 ORTHO05D004573 5.3e-12 75.1 168 34.5
CiPaw.05G098500 Carya illinoinensis HOM05D004039 ORTHO05D004573 6.9e-12 74.7 158 34.2
Hma1.2p1_0738F.1_g210940 Hydrangea macrophylla HOM05D004039 ORTHO05D004573 6.9e-12 74.7 117 41.9
CDE05G3127 Ceratophyllum demersum HOM05D004039 ORTHO05D004573 9.0e-12 74.3 158 36.1
CARHR199550 Cardamine hirsuta HOM05D004039 ORTHO05D004573 1.5e-11 73.6 100 43.0
Thhalv10014767m.g Eutrema salsugineum HOM05D004039 ORTHO05D004573 1.5e-11 73.6 107 43.0
BcaB01g05331 Brassica carinata HOM05D004039 ORTHO05D004573 2.0e-11 73.2 101 44.6
AL6G24520 Arabidopsis lyrata HOM05D004039 ORTHO05D004573 4.5e-11 72.0 65 56.9
Dinv06937 Davidia involucrata HOM05D004039 ORTHO05D004573 5.9e-11 71.6 71 53.5
Duzib205G0448 Durio zibethinus HOM05D001017 ORTHO05D001025 5.9e-11 71.6 99 48.5
Gohir.A09G002600 Gossypium hirsutum HOM05D004039 ORTHO05D004573 5.9e-11 71.6 77 51.9
Gohir.D09G002400 Gossypium hirsutum HOM05D004039 ORTHO05D004573 5.9e-11 71.6 77 51.9
Gorai.006G002900 Gossypium raimondii HOM05D004039 ORTHO05D004573 5.9e-11 71.6 77 51.9
HanXRQChr10g0319941 Helianthus annuus HOM05D004039 ORTHO05D004573 5.9e-11 71.6 123 38.2
PGR119G1683 Punica granatum HOM05D004039 ORTHO05D004573 7.7e-11 71.2 99 42.4
PGR102G1502 Punica granatum HOM05D004039 ORTHO05D004573 2.9e-10 69.3 155 36.1
Gohir.D03G099900 Gossypium hirsutum HOM05D004039 ORTHO05D004573 5.0e-10 68.6 95 46.3
Gorai.003G105000 Gossypium raimondii HOM05D004039 ORTHO05D004573 5.0e-10 68.6 95 46.3
Cpa.g.sc686.1 Carica papaya HOM05D004039 ORTHO05D004573 8.5e-10 67.8 153 34.0
Gohir.A03G073400 Gossypium hirsutum HOM05D004039 ORTHO05D004573 1.4e-09 67.0 95 45.3
DCAR_031611 Daucus carota HOM05D004039 ORTHO05D004573 2.5e-09 66.2 78 43.6
SGA_v2.0_scaffold258G45761 Striga asiatica HOM05D004039 ORTHO05D004573 4.2e-09 65.5 123 37.4
MELO3C014757.2 Cucumis melo HOM05D004039 ORTHO05D004573 7.2e-09 64.7 52 61.5
Migut.K01132 Erythranthe guttata HOM05D004039 ORTHO05D004573 7.2e-09 64.7 117 41.0
Prupe.3G315300 Prunus persica HOM05D004039 ORTHO05D004573 9.4e-09 64.3 50 66.0
Rhsim12G0091100 Rhododendron simsii HOM05D004039 ORTHO05D004573 1.2e-08 63.9 91 46.2
CiPaw.14G093600 Carya illinoinensis HOM05D004039 ORTHO05D004573 1.6e-08 63.5 147 37.4
Sed0011010 Sechium edule HOM05D004039 ORTHO05D004573 4.6e-08 62.0 57 52.6
ClCG05G012460 Citrullus lanatus HOM05D004039 ORTHO05D004573 7.9e-08 61.2 49 61.2
CsaV3_3G020070 Cucumis sativus L. HOM05D004039 ORTHO05D004573 1.0e-07 60.8 102 38.2
Zm00001eb085640 Zea mays HOM05D004039 ORTHO05D004573 1.4e-07 60.5 121 38.8
Os04g0382400 Oryza sativa ssp. japonica HOM05D004039 ORTHO05D004573 2.3e-07 59.7 58 51.7
CDE06G1383 Ceratophyllum demersum HOM05D004039 ORTHO05D004573 6.7e-07 58.2 75 40.0
Rhsim08G0037500 Rhododendron simsii HOM05D004039 ORTHO05D000739 1.5e-06 57.0 84 44.0
CDE02G1703 Ceratophyllum demersum HOM05D004039 ORTHO05D004573 9.7e-06 54.3 78 38.5


User provided reference genes

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