Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G3164 Trifolium pratense HOM05D006680 ORTHO05D008206 1.7e-45 186.0 126 100.0
Medtr4g120020 Medicago truncatula HOM05D006680 ORTHO05D008206 2.0e-41 172.6 95 92.6
Psat4g026840 Pisum sativum HOM05D006680 ORTHO05D008206 1.3e-40 169.9 95 92.6
Ca_21488_v3 Cicer arietinum L. HOM05D006680 ORTHO05D008206 3.7e-40 168.3 96 92.7
Thecc.04G286300 Theobroma cacao HOM05D006680 ORTHO05D008206 2.1e-38 162.5 93 87.1
Gohir.A10G164900 Gossypium hirsutum HOM05D006680 ORTHO05D008206 2.7e-38 162.2 93 86.0
Gohir.D10G171100 Gossypium hirsutum HOM05D006680 ORTHO05D008206 2.7e-38 162.2 93 86.0
Gorai.011G191100 Gossypium raimondii HOM05D006680 ORTHO05D008206 2.7e-38 162.2 93 86.0
Lj4g0016566 Lotus japonicus HOM05D006680 ORTHO05D008206 2.7e-38 162.2 95 86.3
VMungo1215G2846 Vigna mungo HOM05D006680 ORTHO05D008206 4.6e-38 161.4 95 85.3
Manes.03G196700 Manihot esculenta HOM05D006680 ORTHO05D008206 1.0e-37 160.2 90 88.9
TWI09G0327 Tripterygium wilfordii HOM05D006680 ORTHO05D008206 1.0e-37 160.2 94 84.0
ClCG00G005610 Citrullus lanatus HOM05D006680 ORTHO05D008206 1.7e-37 159.5 91 86.8
Glyma.07G246700 Glycine max HOM05D006680 ORTHO05D008206 3.9e-37 158.3 96 82.3
Cpa.g.sc16.184 Carica papaya HOM05D006680 ORTHO05D008206 1.9e-36 156.0 91 86.8
THA.LOC104818922 Tarenaya hassleriana HOM05D006680 ORTHO05D008206 2.5e-36 155.6 95 83.2
A03p34950 Brassica napus HOM05D006680 ORTHO05D008206 3.3e-36 155.2 96 84.4
C03p42530 Brassica napus HOM05D006680 ORTHO05D008206 3.3e-36 155.2 96 84.4
BolC3t16523H Brassica oleracea HOM05D006680 ORTHO05D008206 3.3e-36 155.2 96 84.4
BraA03t12675Z Brassica rapa HOM05D006680 ORTHO05D008206 3.3e-36 155.2 96 84.4
CARHR081510 Cardamine hirsuta HOM05D006680 ORTHO05D008206 3.3e-36 155.2 94 81.9
Carub.0003s0642 Capsella rubella HOM05D006680 ORTHO05D008206 4.3e-36 154.8 94 83.0
BcaC05g29822 Brassica carinata HOM05D006680 ORTHO05D008206 5.6e-36 154.5 96 84.4
BolC5t34701H Brassica oleracea HOM05D006680 ORTHO05D008206 5.6e-36 154.5 96 84.4
MD13G1167200 Malus domestica HOM05D006680 ORTHO05D008206 5.6e-36 154.5 96 81.2
Phvul.003G097003 Phaseolus vulgaris HOM05D006680 ORTHO05D008206 5.6e-36 154.5 95 82.1
BraA05t22848Z Brassica rapa HOM05D006680 ORTHO05D008206 9.5e-36 153.7 96 84.4
AT3G06890 Arabidopsis thaliana HOM05D006680 ORTHO05D008206 1.2e-35 153.3 94 81.9
Manes.15G011600 Manihot esculenta HOM05D006680 ORTHO05D008206 1.2e-35 153.3 90 84.4
Prupe.1G134500 Prunus persica HOM05D006680 ORTHO05D008206 1.6e-35 152.9 95 80.0
AL3G18020 Arabidopsis lyrata HOM05D006680 ORTHO05D008206 2.1e-35 152.5 94 81.9
A05p41250 Brassica napus HOM05D006680 ORTHO05D008206 2.8e-35 152.1 96 84.4
Dinv29759 Davidia involucrata HOM05D006680 ORTHO05D008206 3.6e-35 151.8 91 82.4
Thhalv10021931m.g Eutrema salsugineum HOM05D006680 ORTHO05D008206 3.6e-35 151.8 96 81.2
QL06p009590 Quercus lobata HOM05D006680 ORTHO05D008206 4.7e-35 151.4 95 83.2
RcHm_v2.0_Chr4g0422811 Rosa chinensis HOM05D006680 ORTHO05D008206 6.2e-35 151.0 95 78.9
Ciclev10006049m.g Citrus clementina HOM05D006680 ORTHO05D008206 1.4e-34 149.8 91 81.3
Duzib212G0294 Durio zibethinus HOM05D006680 ORTHO05D008206 1.4e-34 149.8 94 81.9
Cc03_g01760 Coffea canephora HOM05D006680 ORTHO05D008206 1.8e-34 149.4 91 83.5
Peaxi162Scf00246g00103 Petunia axillaris HOM05D006680 ORTHO05D008206 1.8e-34 149.4 95 80.0
Lalb_Chr13g0303561 Lupinus albus HOM05D006680 ORTHO05D008206 3.1e-34 148.7 95 81.1
FvH4_4g18340 Fragaria vesca HOM05D006680 ORTHO05D008206 4.0e-34 148.3 95 75.8
FAN07G2082 Fragaria x ananassa HOM05D006680 ORTHO05D008206 4.0e-34 148.3 95 75.8
FAN12G3601 Fragaria x ananassa HOM05D006680 ORTHO05D008206 4.0e-34 148.3 95 75.8
FAN12G3976 Fragaria x ananassa HOM05D006680 ORTHO05D008206 4.0e-34 148.3 95 75.8
FAN17G1034 Fragaria x ananassa HOM05D006680 ORTHO05D008206 4.0e-34 148.3 95 75.8
Gohir.A09G238300 Gossypium hirsutum HOM05D006680 ORTHO05D008206 4.0e-34 148.3 95 80.0
Potri.008G221000 Populus trichocarpa HOM05D006680 ORTHO05D008206 5.2e-34 147.9 95 80.0
Sp3g05850 Schrenkiella parvula HOM05D006680 ORTHO05D008206 5.2e-34 147.9 96 80.2
Gohir.D09G239200 Gossypium hirsutum HOM05D006680 ORTHO05D008206 8.9e-34 147.1 95 78.9
Gorai.006G261900 Gossypium raimondii HOM05D006680 ORTHO05D008206 8.9e-34 147.1 95 78.9
Duzib151G0306 Durio zibethinus HOM05D006680 ORTHO05D008206 1.2e-33 146.7 96 82.3
Atru.chr4.2870 Acer truncatum HOM05D006680 ORTHO05D008206 1.5e-33 146.4 91 81.3
CiPaw.01G147500 Carya illinoinensis HOM05D006680 ORTHO05D008206 1.5e-33 146.4 96 81.2
CANSAT78G1139 Cannabis sativa HOM05D006680 ORTHO05D008206 3.4e-33 145.2 91 79.1
Nitab4.5_0003466g0010 Nicotiana tabacum HOM05D006680 ORTHO05D008206 3.4e-33 145.2 94 77.7
Sabra10G0008200 Salix brachista HOM05D006680 ORTHO05D008206 5.8e-33 144.4 90 78.9
Lalb_Chr07g0177791 Lupinus albus HOM05D006680 ORTHO05D008206 7.6e-33 144.1 93 79.6
ECA240G4018 Erigeron canadensis HOM05D006680 ORTHO05D008206 9.9e-33 143.7 94 76.6
Nitab4.5_0002761g0070 Nicotiana tabacum HOM05D006680 ORTHO05D008206 9.9e-33 143.7 91 81.3
Oeu063359.1 Olea europaea HOM05D006680 ORTHO05D008206 1.3e-32 143.3 91 80.2
Hma1.2p1_1185F.1_g265000 Hydrangea macrophylla HOM05D006680 ORTHO05D008206 1.7e-32 142.9 94 77.7
Potri.010G013100 Populus trichocarpa HOM05D006680 ORTHO05D008206 1.7e-32 142.9 95 75.8
CAN.G129.31 Capsicum annuum HOM05D006680 ORTHO05D008206 4.9e-32 141.4 91 80.2
DCAR_002469 Daucus carota HOM05D006680 ORTHO05D008206 6.4e-32 141.0 97 74.2
Oeu001107.1 Olea europaea HOM05D006680 ORTHO05D008206 6.4e-32 141.0 91 78.0
Sed0015603 Sechium edule HOM05D006680 ORTHO05D008206 8.4e-32 140.6 91 74.7
Migut.G00148 Erythranthe guttata HOM05D006680 ORTHO05D008206 1.1e-31 140.2 91 78.0
CiPaw.02G082300 Carya illinoinensis HOM05D006680 ORTHO05D008206 1.4e-31 139.8 96 77.1
Solyc12g099500.2 Solanum lycopersicum HOM05D006680 ORTHO05D008206 2.4e-31 139.0 93 74.2
Sopen12g034170 Solanum pennellii HOM05D006680 ORTHO05D008206 2.4e-31 139.0 93 74.2
Peaxi162Scf00646g00027 Petunia axillaris HOM05D006680 ORTHO05D008206 3.2e-31 138.7 94 74.5
DCAR_027070 Daucus carota HOM05D006680 ORTHO05D008206 5.4e-31 137.9 93 74.2
MSTRG.3906 Avicennia marina HOM05D006680 ORTHO05D008206 1.2e-30 136.7 94 71.3
Lsat_1_v5_gn_6_95660 Lactuca sativa HOM05D006680 ORTHO05D008206 1.6e-30 136.3 94 72.3
PGSC0003DMG400011317 Solanum tuberosum HOM05D006680 ORTHO05D008206 2.1e-30 136.0 91 74.7
Sopen01g028370 Solanum pennellii HOM05D006680 ORTHO05D008206 2.7e-30 135.6 91 75.8
CAN.G484.39 Capsicum annuum HOM05D006680 ORTHO05D008206 3.5e-30 135.2 93 73.1
TAR370G0002 Trochodendron aralioides HOM05D006680 ORTHO05D008206 3.5e-30 135.2 93 74.2
PGSC0003DMG400004705 Solanum tuberosum HOM05D006680 ORTHO05D008206 4.6e-30 134.8 95 72.6
PGR004G0310 Punica granatum HOM05D006680 ORTHO05D008206 7.8e-30 134.0 95 73.7
Aqoxy2G02951 Aquilegia oxysepala HOM05D006680 ORTHO05D008206 3.0e-29 132.1 94 73.4
SGA_v2.0_scaffold67G22622 Striga asiatica HOM05D006680 ORTHO05D008206 6.6e-29 131.0 91 71.4
Ah.08g214570 Amaranthus hybridus HOM05D006680 ORTHO05D008206 1.9e-28 129.4 94 72.3
Sc19g0005290 Simmondsia chinensis HOM05D006680 ORTHO05D008206 3.3e-28 128.6 96 74.0
Sc19g0005370 Simmondsia chinensis HOM05D006680 ORTHO05D008206 3.3e-28 128.6 96 74.0
Nn4g25792 Nelumbo nucifera HOM05D006680 ORTHO05D008206 5.6e-28 127.9 95 67.4
CSS0014864 Camellia sinensis var. sinensis HOM05D006680 ORTHO05D008206 1.6e-27 126.3 92 71.7
AUR62040379 Chenopodium quinoa HOM05D006680 ORTHO05D008206 1.6e-27 126.3 94 69.1
PGR031G3343 Punica granatum HOM05D006680 ORTHO05D008206 2.8e-27 125.6 93 67.7
CSS0010580 Camellia sinensis var. sinensis HOM05D006680 ORTHO05D008206 4.7e-27 124.8 92 71.7
MBI19_g25353_MAGBIO Magnolia biondii HOM05D006680 ORTHO05D008206 6.2e-27 124.4 92 66.3
PSO170G5007 Papaver somniferum HOM05D006680 ORTHO05D008206 8.1e-27 124.0 94 70.2
Nn3g21479 Nelumbo nucifera HOM05D006680 ORTHO05D008206 1.1e-26 123.6 83 75.9
PSO017G4993 Papaver somniferum HOM05D006680 ORTHO05D008206 1.8e-26 122.9 94 69.1
HanXRQChr13g0419971 Helianthus annuus HOM05D006680 ORTHO05D008206 2.4e-26 122.5 95 66.3
PSO832G1781 Papaver somniferum HOM05D006680 ORTHO05D008206 5.2e-26 121.3 101 66.3
Sabra10G0008300 Salix brachista HOM05D006680 ORTHO05D008206 5.2e-26 121.3 94 67.0
Thecc.09G272700 Theobroma cacao HOM05D006680 ORTHO05D008206 5.2e-26 121.3 73 84.9
DCAR_030521 Daucus carota HOM05D006680 ORTHO05D008206 1.2e-25 120.2 97 66.0
MBI18_g06870_MAGBIO Magnolia biondii HOM05D006680 ORTHO05D008206 1.2e-25 120.2 96 67.7
PSO210G6323 Papaver somniferum HOM05D006680 ORTHO05D008206 2.9e-24 115.5 101 64.4
Rhsim04G0223700 Rhododendron simsii HOM05D006680 ORTHO05D008206 6.4e-24 114.4 94 61.7
Rhsim09G0007300 Rhododendron simsii HOM05D006680 ORTHO05D008206 6.4e-24 114.4 94 61.7
HPP92_000110 Vanilla planifolia HOM05D006680 ORTHO05D008206 1.1e-23 113.6 94 61.7
Os03g0343800 Oryza sativa ssp. japonica HOM05D006680 ORTHO05D008206 3.2e-23 112.1 95 61.1
Thecc.05G268700 Theobroma cacao HOM05D006680 ORTHO05D008206 9.3e-23 110.5 73 79.5
ATR0796G044 Amborella trichopoda HOM05D006680 ORTHO05D008206 3.9e-21 105.1 95 60.0
MD16G1168200 Malus domestica HOM05D006680 ORTHO05D008206 1.1e-20 103.6 97 63.9
Zm00001eb124100 Zea mays HOM05D006680 ORTHO05D008206 5.3e-18 94.7 90 56.7
Zm00001eb016470 Zea mays HOM05D006680 ORTHO05D008206 6.9e-18 94.4 95 52.6
HanXRQChr03g0089341 Helianthus annuus HOM05D006680 ORTHO05D008206 1.2e-17 93.6 94 54.3
Eucgr.H03932 Eucalyptus grandis HOM05D006680 ORTHO05D008206 2.6e-17 92.4 97 53.6
unitig_32.g11869 Utricularia gibba HOM05D006680 ORTHO05D008206 6.4e-16 87.8 89 53.9
Zm00001eb394930 Zea mays HOM05D006680 ORTHO05D008206 2.7e-14 82.4 74 59.5
Os07g0673801 Oryza sativa ssp. japonica HOM05D006680 ORTHO05D008206 1.1e-12 77.0 88 45.5
TAR633G0386 Trochodendron aralioides HOM05D006680 ORTHO05D008206 1.9e-12 76.3 98 46.9
SalBow5G0837 Salvia bowleyana HOM05D006680 ORTHO05D008206 6.9e-10 67.8 94 43.6


User provided reference genes

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