Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G31604 Trifolium pratense HOM05D006601 ORTHO05D008281 1.5e-71 272.7 135 100.0
Medtr5g042160 Medicago truncatula HOM05D006601 ORTHO05D008281 8.3e-70 266.9 134 97.0
Psat2g116120 Pisum sativum HOM05D006601 ORTHO05D008281 1.1e-69 266.5 134 96.3
Ca_04833_v3 Cicer arietinum L. HOM05D006601 ORTHO05D008281 1.4e-69 266.2 134 97.0
Glyma.02G110700 Glycine max HOM05D006601 ORTHO05D008281 3.1e-69 265.0 134 96.3
Glyma.01G052400 Glycine max HOM05D006601 ORTHO05D008281 1.6e-68 262.7 134 95.5
Phvul.002G091600 Phaseolus vulgaris HOM05D006601 ORTHO05D008281 5.9e-68 260.8 134 94.8
Lj2g0012177 Lotus japonicus HOM05D006601 ORTHO05D008281 5.0e-67 257.7 134 94.0
arahy.Tifrunner.gnm1.ann1.VBS9AQ Arachis hypogaea HOM05D006601 ORTHO05D008281 1.5e-66 256.1 134 94.0
Lalb_Chr10g0098441 Lupinus albus HOM05D006601 ORTHO05D008281 9.5e-66 253.4 134 92.5
Prupe.5G030400 Prunus persica HOM05D006601 ORTHO05D008281 9.5e-66 253.4 134 91.8
Cfa010329 Carpinus fangiana HOM05D006601 ORTHO05D008281 6.1e-65 250.8 134 91.0
QL04p046797 Quercus lobata HOM05D006601 ORTHO05D008281 6.1e-65 250.8 134 91.0
QL04p047245 Quercus lobata HOM05D006601 ORTHO05D008281 6.1e-65 250.8 134 91.0
GSVIVG01010682001 Vitis vinifera HOM05D006601 ORTHO05D008281 6.1e-65 250.8 134 90.3
MD06G1038200 Malus domestica HOM05D006601 ORTHO05D008281 2.3e-64 248.8 134 90.3
PSO339G2358 Papaver somniferum HOM05D006601 ORTHO05D008281 5.2e-64 247.7 134 89.6
Rhsim09G0141800 Rhododendron simsii HOM05D006601 ORTHO05D008281 6.8e-64 247.3 134 89.6
CAN.G1417.5 Capsicum annuum HOM05D006601 ORTHO05D008281 1.5e-63 246.1 134 88.1
Nitab4.5_0009484g0010 Nicotiana tabacum HOM05D006601 ORTHO05D008281 2.0e-63 245.7 134 88.1
RcHm_v2.0_Chr6g0269151 Rosa chinensis HOM05D006601 ORTHO05D008281 3.4e-63 245.0 134 88.1
FvH4_2g10940 Fragaria vesca HOM05D006601 ORTHO05D008281 4.4e-63 244.6 134 88.8
FAN24G1745 Fragaria x ananassa HOM05D006601 ORTHO05D008281 4.4e-63 244.6 134 88.8
DCAR_006335 Daucus carota HOM05D006601 ORTHO05D008281 5.7e-63 244.2 134 86.6
CSS0000414 Camellia sinensis var. sinensis HOM05D006601 ORTHO05D008281 7.5e-63 243.8 134 88.8
CiPaw.13G041000 Carya illinoinensis HOM05D006601 ORTHO05D008281 2.2e-62 242.3 134 86.6
Dinv12840 Davidia involucrata HOM05D006601 ORTHO05D008281 3.7e-62 241.5 134 86.6
ECA232G0968 Erigeron canadensis HOM05D006601 ORTHO05D008281 4.9e-62 241.1 134 86.6
TAR633G2162 Trochodendron aralioides HOM05D006601 ORTHO05D008281 6.4e-62 240.7 134 86.6
Cc02_g09570 Coffea canephora HOM05D006601 ORTHO05D008281 1.4e-61 239.6 134 87.3
Solyc11g006760.3 Solanum lycopersicum HOM05D006601 ORTHO05D008281 1.4e-61 239.6 134 85.8
Sopen11g002690 Solanum pennellii HOM05D006601 ORTHO05D008281 1.4e-61 239.6 134 85.8
PGSC0003DMG400023966 Solanum tuberosum HOM05D006601 ORTHO05D008281 1.4e-61 239.6 134 85.8
Aqoxy2G01120 Aquilegia oxysepala HOM05D006601 ORTHO05D008281 1.8e-61 239.2 134 86.6
FAN20G1775 Fragaria x ananassa HOM05D006601 ORTHO05D008281 1.8e-61 239.2 130 90.0
Lsat_1_v5_gn_0_8161 Lactuca sativa HOM05D006601 ORTHO05D008281 1.8e-61 239.2 134 85.1
RcHm_v2.0_Chr2g0160691 Rosa chinensis HOM05D006601 ORTHO05D008281 2.4e-61 238.8 134 86.6
Eucgr.J00269 Eucalyptus grandis HOM05D006601 ORTHO05D008281 3.2e-61 238.4 134 86.6
vmacro10311 Vaccinium macrocarpon HOM05D006601 ORTHO05D008281 3.2e-61 238.4 155 78.1
Nn6g34864 Nelumbo nucifera HOM05D006601 ORTHO05D008281 4.1e-61 238.0 132 87.1
SalBow3G0796 Salvia bowleyana HOM05D006601 ORTHO05D008281 4.1e-61 238.0 134 85.1
AUR62041519 Chenopodium quinoa HOM05D006601 ORTHO05D008281 5.4e-61 237.7 134 85.1
Gohir.A05G287400 Gossypium hirsutum HOM05D006601 ORTHO05D008281 7.0e-61 237.3 134 84.3
MBI17_g13115_MAGBIO Magnolia biondii HOM05D006601 ORTHO05D008281 7.0e-61 237.3 134 87.3
Potri.008G019100 Populus trichocarpa HOM05D006601 ORTHO05D008281 7.0e-61 237.3 134 84.3
Thecc.10G114200 Theobroma cacao HOM05D006601 ORTHO05D008281 9.2e-61 236.9 134 84.3
Atru.chr12.1047 Acer truncatum HOM05D006601 ORTHO05D008281 1.6e-60 236.1 134 86.6
HanXRQChr11g0321661 Helianthus annuus HOM05D006601 ORTHO05D008281 1.6e-60 236.1 134 83.6
Potri.010G240300 Populus trichocarpa HOM05D006601 ORTHO05D008281 2.7e-60 235.3 134 83.6
Gohir.D05G288500 Gossypium hirsutum HOM05D006601 ORTHO05D008281 3.5e-60 235.0 134 82.8
Gorai.009G303600 Gossypium raimondii HOM05D006601 ORTHO05D008281 3.5e-60 235.0 134 82.8
Peaxi162Scf00125g00234 Petunia axillaris HOM05D006601 ORTHO05D008281 3.5e-60 235.0 134 82.8
TWI38G1517 Tripterygium wilfordii HOM05D006601 ORTHO05D008281 4.6e-60 234.6 134 82.8
SGA_v2.0_scaffold62G21313 Striga asiatica HOM05D006601 ORTHO05D008281 5.9e-60 234.2 134 85.8
Duzib114G0052 Durio zibethinus HOM05D006601 ORTHO05D008281 1.0e-59 233.4 134 82.1
Manes.10G062700 Manihot esculenta HOM05D006601 ORTHO05D008281 1.0e-59 233.4 134 84.3
Oeu026608.1 Olea europaea HOM05D006601 ORTHO05D008281 1.0e-59 233.4 134 83.6
COL.COLO4_03655 Corchorus olitorius HOM05D006601 ORTHO05D008281 2.3e-59 232.3 134 84.3
FAN15G0841 Fragaria x ananassa HOM05D006601 ORTHO05D008281 3.0e-59 231.9 127 88.2
Hund22273 Selenicereus undatus HOM05D006601 ORTHO05D008281 3.0e-59 231.9 134 82.1
Oeu030223.2 Olea europaea HOM05D006601 ORTHO05D008281 5.0e-59 231.1 134 83.6
MSTRG.9054 Avicennia marina HOM05D006601 ORTHO05D008281 1.1e-58 229.9 134 81.3
THA.LOC104823558 Tarenaya hassleriana HOM05D006601 ORTHO05D008281 1.1e-58 229.9 134 82.8
PGR044G2546 Punica granatum HOM05D006601 ORTHO05D008281 2.5e-58 228.8 134 81.3
Migut.F00866 Erythranthe guttata HOM05D006601 ORTHO05D008281 7.3e-58 227.3 133 82.7
Os08g0558700 Oryza sativa ssp. japonica HOM05D006601 ORTHO05D008281 7.3e-58 227.3 131 82.4
ClCG08G008320 Citrullus lanatus HOM05D006601 ORTHO05D008281 1.2e-57 226.5 134 83.6
Ciclev10016593m.g Citrus clementina HOM05D006601 ORTHO05D008281 2.8e-57 225.3 134 81.3
MELO3C019900.2 Cucumis melo HOM05D006601 ORTHO05D008281 3.6e-57 224.9 134 82.8
Aa31LG10G7330 Aethionema arabicum HOM05D006601 ORTHO05D008281 4.7e-57 224.6 134 80.6
unitig_899.g14469 Utricularia gibba HOM05D006601 ORTHO05D008281 6.2e-57 224.2 133 81.2
HPP92_000012 Vanilla planifolia HOM05D006601 ORTHO05D008281 6.2e-57 224.2 131 82.4
AL5G32810 Arabidopsis lyrata HOM05D006601 ORTHO05D008281 1.0e-56 223.4 134 79.1
AT3G52220 Arabidopsis thaliana HOM05D006601 ORTHO05D008281 1.0e-56 223.4 134 79.1
CsaV3_6G004290 Cucumis sativus L. HOM05D006601 ORTHO05D008281 1.4e-56 223.0 134 82.1
arahy.Tifrunner.gnm1.ann1.0XG3CD Arachis hypogaea HOM05D006601 ORTHO05D008281 4.0e-56 221.5 134 85.1
Sp5g10040 Schrenkiella parvula HOM05D006601 ORTHO05D008281 4.0e-56 221.5 134 79.1
Sed0022988 Sechium edule HOM05D006601 ORTHO05D008281 4.0e-56 221.5 134 82.1
Carub.0005s1858 Capsella rubella HOM05D006601 ORTHO05D008281 8.9e-56 220.3 134 77.6
CARHR161980 Cardamine hirsuta HOM05D006601 ORTHO05D008281 3.4e-55 218.4 134 76.9
A09p45280 Brassica napus HOM05D006601 ORTHO05D008281 5.8e-55 217.6 134 76.1
C08p27460 Brassica napus HOM05D006601 ORTHO05D008281 5.8e-55 217.6 134 76.1
BolC8t50363H Brassica oleracea HOM05D006601 ORTHO05D008281 5.8e-55 217.6 134 76.1
BraA09t39991Z Brassica rapa HOM05D006601 ORTHO05D008281 5.8e-55 217.6 134 76.1
Thhalv10010678m.g Eutrema salsugineum HOM05D006601 ORTHO05D008281 9.8e-55 216.9 134 76.9
SEGI_26123 Sequoiadendron giganteum HOM05D006601 ORTHO05D008281 1.7e-54 216.1 134 76.1
Lj3A925T73 Lonicera japonica HOM05D006601 ORTHO05D008281 5.4e-53 211.1 119 85.7
Sabra10G0188100 Salix brachista HOM05D006601 ORTHO05D008281 3.0e-51 205.3 197 56.3
TWI63G1188 Tripterygium wilfordii HOM05D006601 ORTHO05D008281 2.5e-50 202.2 120 80.8
Pp3c1_22490 Physcomitrium patens HOM05D006601 ORTHO05D008281 4.4e-47 191.4 134 70.1
SMO367G0990 Selaginella moellendorffii HOM05D006601 ORTHO05D008281 1.4e-45 186.4 132 70.5
Mapoly0044s0087 Marchantia polymorpha HOM05D006601 ORTHO05D008281 4.1e-45 184.9 133 65.4
ATR0776G086 Amborella trichopoda HOM05D006601 ORTHO05D008281 5.4e-45 184.5 119 75.6
Actinidia31106 Actinidia chinensis HOM05D006601 ORTHO05D008281 1.1e-40 170.2 91 86.8
CDE04G0959 Ceratophyllum demersum HOM05D006601 ORTHO05D008281 4.4e-39 164.9 134 62.7
AUR62042084 Chenopodium quinoa HOM05D006601 ORTHO05D008281 2.1e-36 156.0 134 63.4
Haze_03300 Corylus avellana HOM05D006601 ORTHO05D008281 2.1e-36 156.0 90 88.9
Nitab4.5_0002586g0010 Nicotiana tabacum HOM05D006601 ORTHO05D008281 2.3e-35 152.5 91 85.7
Sc09g0005300 Simmondsia chinensis HOM05D006601 ORTHO05D008281 4.3e-34 148.3 90 82.2
MCO05G050 Micromonas commoda HOM05D006601 ORTHO05D008281 3.8e-30 135.2 131 55.0
BcaC07g39592 Brassica carinata HOM05D006601 ORTHO05D008281 5.4e-29 131.3 140 52.9
PSO692G0001 Papaver somniferum HOM05D006601 ORTHO05D008281 4.6e-28 128.3 73 91.8
PSO801G0555 Papaver somniferum HOM05D006601 ORTHO05D008281 4.6e-28 128.3 73 91.8
Cre18.g749347 Chlamydomonas reinhardtii HOM05D006601 ORTHO05D008281 5.1e-27 124.8 147 47.6
Aqoxy2G01116 Aquilegia oxysepala HOM05D006601 ORTHO05D008281 1.2e-20 103.6 73 75.3
CiPaw.14G033700 Carya illinoinensis HOM05D006601 ORTHO05D008281 6.0e-20 101.3 80 71.2
Ah.06g186680 Amaranthus hybridus HOM05D006601 ORTHO05D008281 1.8e-19 99.8 55 89.1
Zm00001eb039400 Zea mays HOM05D006601 ORTHO05D008281 3.6e-17 92.0 52 84.6
Cfa024623 Carpinus fangiana HOM05D006601 ORTHO05D008281 4.8e-17 91.7 108 44.4
Lsat_1_v5_gn_4_8660 Lactuca sativa HOM05D006601 ORTHO05D008281 1.7e-14 83.2 55 72.7
Hma1.2p1_1491F.1_g286720 Hydrangea macrophylla HOM05D006601 ORTHO05D008281 8.7e-11 70.9 37 91.9
EL10Ac7g17292 Beta vulgaris HOM05D006601 ORTHO05D008281 5.6e-10 68.2 31 87.1
Aqoxy2G01117 Aquilegia oxysepala HOM05D006601 ORTHO05D008281 1.8e-08 63.2 31 80.6
BcaC02g09271 Brassica carinata HOM05D006601 ORTHO05D008281 5.3e-08 61.6 52 69.2
AagrBONN_evm.TU.Sc2ySwM_228.2727 Anthoceros agrestis HOM05D006601 ORTHO05D008281 4.5e-07 58.5 54 55.6
EL10Ac8g19171 Beta vulgaris HOM05D006601 ORTHO05D008281 1.3e-06 57.0 25 88.0


User provided reference genes

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