Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G31583 Trifolium pratense HOM05D000095 ORTHO05D411753 1.1e-40 169.5 83 100.0
TPR.G16805 Trifolium pratense HOM05D000095 ORTHO05D023071 1.0e-38 162.9 81 97.5
TPR.G34621 Trifolium pratense HOM05D000095 ORTHO05D023071 3.6e-15 84.7 61 75.4
TPR.G26316 Trifolium pratense HOM05D000095 ORTHO05D000330 1.3e-09 66.2 88 46.6
Nitab4.5_0010633g0050 Nicotiana tabacum HOM05D000095 ORTHO05D000330 6.5e-09 63.9 64 50.0
PGR044G0688 Punica granatum HOM05D000095 ORTHO05D000330 1.9e-08 62.4 83 43.4
Gohir.A09G096600 Gossypium hirsutum HOM05D000095 ORTHO05D000330 2.5e-08 62.0 82 45.1
COL.COLO4_34015 Corchorus olitorius HOM05D000095 ORTHO05D000330 3.2e-08 61.6 82 45.1
Manes.11G163500 Manihot esculenta HOM05D000095 ORTHO05D000330 5.5e-08 60.8 86 41.9
Hund06791 Selenicereus undatus HOM05D000095 ORTHO05D000330 5.5e-08 60.8 87 40.2
THA.LOC104823151 Tarenaya hassleriana HOM05D000095 ORTHO05D000330 5.5e-08 60.8 77 42.9
Thecc.09G279700 Theobroma cacao HOM05D000095 ORTHO05D000330 5.5e-08 60.8 81 43.2
QL04p046846 Quercus lobata HOM05D000095 ORTHO05D000330 7.2e-08 60.5 90 41.1
DCAR_006333 Daucus carota HOM05D000095 ORTHO05D000330 9.4e-08 60.1 80 42.5
Gorai.006G113100 Gossypium raimondii HOM05D000095 ORTHO05D000330 9.4e-08 60.1 84 42.9
Duzib170G0758 Durio zibethinus HOM05D000095 ORTHO05D000330 1.2e-07 59.7 84 44.0
Lj5g0008074 Lotus japonicus HOM05D000095 ORTHO05D000330 1.2e-07 59.7 84 38.1
VMungo0720G1907 Vigna mungo HOM05D000095 ORTHO05D000330 1.2e-07 59.7 88 40.9
HanXRQChr11g0342051 Helianthus annuus HOM05D000095 ORTHO05D000330 1.6e-07 59.3 79 44.3
Lalb_Chr02g0146191 Lupinus albus HOM05D000095 ORTHO05D000330 1.6e-07 59.3 89 39.3
Manes.10G062800 Manihot esculenta HOM05D000095 ORTHO05D000330 1.6e-07 59.3 79 40.5
Potri.001G219100 Populus trichocarpa HOM05D000095 ORTHO05D000330 1.6e-07 59.3 82 41.5
Sabra16G0125200 Salix brachista HOM05D000095 ORTHO05D000330 1.6e-07 59.3 81 45.7
Gohir.D09G096400 Gossypium hirsutum HOM05D000095 ORTHO05D000330 2.7e-07 58.5 86 43.0
Phvul.007G023600 Phaseolus vulgaris HOM05D000095 ORTHO05D000330 2.7e-07 58.5 87 43.7
PGSC0003DMG400023495 Solanum tuberosum HOM05D000095 ORTHO05D000330 2.7e-07 58.5 74 43.2
Sed0012225 Sechium edule HOM05D000095 ORTHO05D000330 3.6e-07 58.2 82 39.0
Carub.0006s0365 Capsella rubella HOM05D000095 ORTHO05D000330 4.7e-07 57.8 78 38.5
ClCG08G008340 Citrullus lanatus HOM05D000095 ORTHO05D000330 4.7e-07 57.8 82 40.2
Solyc05g055240.3 Solanum lycopersicum HOM05D000095 ORTHO05D000330 4.7e-07 57.8 74 43.2
Sopen05g033680 Solanum pennellii HOM05D000095 ORTHO05D000330 4.7e-07 57.8 74 43.2
Lalb_Chr21g0309111 Lupinus albus HOM05D000095 ORTHO05D000330 6.1e-07 57.4 87 40.2
GSVIVG01036090001 Vitis vinifera HOM05D000095 ORTHO05D000330 6.1e-07 57.4 82 36.6
Ah.04g162460 Amaranthus hybridus HOM05D000095 ORTHO05D000330 8.0e-07 57.0 88 37.5
CsaV3_6G004320 Cucumis sativus L. HOM05D000095 ORTHO05D000330 8.0e-07 57.0 82 40.2
HanXRQChr11g0342071 Helianthus annuus HOM05D000095 ORTHO05D000330 8.0e-07 57.0 88 40.9
Peaxi162Scf00519g00059 Petunia axillaris HOM05D000095 ORTHO05D000330 8.0e-07 57.0 68 48.5
HanXRQChr11g0342011 Helianthus annuus HOM05D000095 ORTHO05D000330 1.0e-06 56.6 88 40.9
MD07G1061400 Malus domestica HOM05D000095 ORTHO05D000330 1.0e-06 56.6 76 38.2
Atru.chr12.1051 Acer truncatum HOM05D000095 ORTHO05D000330 1.4e-06 56.2 81 35.8
MELO3C019904.2 Cucumis melo HOM05D000095 ORTHO05D000330 1.4e-06 56.2 82 39.0
Glyma.10G277800 Glycine max HOM05D000095 ORTHO05D000330 1.4e-06 56.2 89 38.2
TAR369G1014 Trochodendron aralioides HOM05D000095 ORTHO05D000330 1.4e-06 56.2 82 42.7
AL6G14420 Arabidopsis lyrata HOM05D000095 ORTHO05D000330 1.8e-06 55.8 76 39.5
Ca_25652_v3 Cicer arietinum L. HOM05D000095 ORTHO05D000330 1.8e-06 55.8 86 39.5
Ciclev10016071m.g Citrus clementina HOM05D000095 ORTHO05D000330 1.8e-06 55.8 77 39.0
HanXRQChr05g0147731 Helianthus annuus HOM05D000095 ORTHO05D000330 1.8e-06 55.8 85 40.0
Psat6g238440 Pisum sativum HOM05D000095 ORTHO05D000330 1.8e-06 55.8 86 38.4
Solyc11g006720.2 Solanum lycopersicum HOM05D000095 ORTHO05D000330 1.8e-06 55.8 79 43.0
Sopen11g002650 Solanum pennellii HOM05D000095 ORTHO05D000330 1.8e-06 55.8 79 43.0
PGSC0003DMG400007603 Solanum tuberosum HOM05D000095 ORTHO05D000330 1.8e-06 55.8 79 43.0
TWI63G0657 Tripterygium wilfordii HOM05D000095 ORTHO05D000330 1.8e-06 55.8 81 38.3
BcaC06g32182 Brassica carinata HOM05D000095 ORTHO05D000330 2.3e-06 55.5 70 41.4
Migut.F01593 Erythranthe guttata HOM05D000095 ORTHO05D000330 2.3e-06 55.5 84 42.9
MBI17_g04162_MAGBIO Magnolia biondii HOM05D000095 ORTHO05D000330 2.3e-06 55.5 88 36.4
Aa31LG11G5590 Aethionema arabicum HOM05D000095 ORTHO05D000330 3.0e-06 55.1 76 40.8
BolC9t59955H Brassica oleracea HOM05D002188 ORTHO05D002349 3.0e-06 55.1 70 38.6
CSS0014479 Camellia sinensis var. sinensis HOM05D000095 ORTHO05D000330 3.0e-06 55.1 83 38.6
Thhalv10014613m.g Eutrema salsugineum HOM05D000095 ORTHO05D000330 3.0e-06 55.1 79 38.0
Lsat_1_v5_gn_2_105481 Lactuca sativa HOM05D000095 ORTHO05D000330 3.0e-06 55.1 78 44.9
Lj3A925G68 Lonicera japonica HOM05D000095 ORTHO05D000330 3.0e-06 55.1 84 36.9
Sc09g0005220 Simmondsia chinensis HOM05D000095 ORTHO05D000330 3.0e-06 55.1 84 38.1
EL10Ac4g08693 Beta vulgaris HOM05D000095 ORTHO05D000330 4.0e-06 54.7 88 36.4
BraA10t45189Z Brassica rapa HOM05D002188 ORTHO05D002349 4.0e-06 54.7 70 37.1
CSS0000442 Camellia sinensis var. sinensis HOM05D000095 ORTHO05D000330 4.0e-06 54.7 83 39.8
Cfa010564 Carpinus fangiana HOM05D000095 ORTHO05D000330 4.0e-06 54.7 75 36.0
Duzib168G0662 Durio zibethinus HOM05D000095 ORTHO05D000330 4.0e-06 54.7 82 41.5
Glyma.20G111800 Glycine max HOM05D000095 ORTHO05D000330 4.0e-06 54.7 89 37.1
Lalb_Chr06g0166321 Lupinus albus HOM05D000095 ORTHO05D000330 4.0e-06 54.7 88 38.6
vmacro07262 Vaccinium macrocarpon HOM05D000095 ORTHO05D000330 4.0e-06 54.7 81 39.5
AT4G09450 Arabidopsis thaliana HOM05D000095 ORTHO05D000330 5.2e-06 54.3 70 42.9
AT5G04760 Arabidopsis thaliana HOM05D000095 ORTHO05D000330 5.2e-06 54.3 79 38.0
CAN.G143.6 Capsicum annuum HOM05D000095 ORTHO05D000330 5.2e-06 54.3 87 40.2
Dinv07588 Davidia involucrata HOM05D000095 ORTHO05D000330 5.2e-06 54.3 81 42.0
Thecc.09G266300 Theobroma cacao HOM05D000095 ORTHO05D000330 5.2e-06 54.3 83 38.6
C09p72100 Brassica napus HOM05D000095 ORTHO05D000330 6.8e-06 53.9 70 37.1
Dinv12848 Davidia involucrata HOM05D000095 ORTHO05D000330 6.8e-06 53.9 81 42.0
Dinv12852 Davidia involucrata HOM05D000095 ORTHO05D000330 6.8e-06 53.9 81 42.0
Nitab4.5_0001047g0070 Nicotiana tabacum HOM05D000095 ORTHO05D000330 6.8e-06 53.9 79 39.2
Nitab4.5_0001786g0040 Nicotiana tabacum HOM05D000095 ORTHO05D000330 6.8e-06 53.9 79 41.8
AUR62042086 Chenopodium quinoa HOM05D000095 ORTHO05D000330 8.8e-06 53.5 94 37.2


User provided reference genes

Program Settings