Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G31487 Trifolium pratense HOM05D005972 ORTHO05D007548 2.0e-217 758.8 381 100.0
Psat0s2194g0120 Pisum sativum HOM05D005972 ORTHO05D007548 9.8e-193 676.8 381 87.1
Medtr4g094305 Medicago truncatula HOM05D005972 ORTHO05D007548 1.8e-191 672.5 380 86.1
Ca_18332_v3 Cicer arietinum L. HOM05D005972 ORTHO05D007548 1.3e-189 666.4 379 85.2
Lj4g0025997 Lotus japonicus HOM05D005972 ORTHO05D007548 7.0e-183 644.0 381 81.9
Lalb_Chr12g0208521 Lupinus albus HOM05D005972 ORTHO05D007548 1.2e-177 626.7 381 79.5
Glyma.05G120600 Glycine max HOM05D005972 ORTHO05D007548 1.6e-171 606.3 381 77.4
arahy.Tifrunner.gnm1.ann1.41EE5L Arachis hypogaea HOM05D005972 ORTHO05D007548 2.3e-170 602.4 381 75.9
arahy.Tifrunner.gnm1.ann1.UKM804 Arachis hypogaea HOM05D005972 ORTHO05D007548 1.2e-169 600.1 381 75.3
Glyma.08G075400 Glycine max HOM05D005972 ORTHO05D007548 2.7e-166 589.0 381 75.9
VMungo0251G2526 Vigna mungo HOM05D005972 ORTHO05D007548 2.6e-161 572.4 404 70.0
Phvul.002G206200 Phaseolus vulgaris HOM05D005972 ORTHO05D007548 9.0e-154 547.4 381 71.4
CSS0039579 Camellia sinensis var. sinensis HOM05D005972 ORTHO05D007548 2.7e-150 535.8 377 68.7
Cfa019136 Carpinus fangiana HOM05D005972 ORTHO05D007548 7.8e-150 534.3 375 68.8
Prupe.1G287600 Prunus persica HOM05D005972 ORTHO05D007548 1.1e-148 530.4 376 69.7
Rhsim05G0111400 Rhododendron simsii HOM05D005972 ORTHO05D007548 1.3e-147 526.9 376 68.4
Potri.001G222400 Populus trichocarpa HOM05D005972 ORTHO05D007548 3.6e-147 525.4 377 67.4
MD13G1062400 Malus domestica HOM05D005972 ORTHO05D007548 2.4e-146 522.7 375 68.5
Eucgr.H00021 Eucalyptus grandis HOM05D005972 ORTHO05D007548 1.2e-145 520.4 379 66.2
QL04p050517 Quercus lobata HOM05D005972 ORTHO05D007548 8.4e-144 514.2 428 61.4
GSVIVG01020853001 Vitis vinifera HOM05D005972 ORTHO05D007548 1.4e-143 513.5 376 66.2
Nitab4.5_0000718g0290 Nicotiana tabacum HOM05D005972 ORTHO05D007548 2.4e-143 512.7 375 66.1
Lj9A317T77 Lonicera japonica HOM05D005972 ORTHO05D007548 3.2e-143 512.3 375 66.1
Nitab4.5_0012898g0010 Nicotiana tabacum HOM05D005972 ORTHO05D007548 1.2e-142 510.4 375 65.6
Gorai.N007100 Gossypium raimondii HOM05D005972 ORTHO05D007548 1.6e-142 510.0 378 64.8
CiPaw.11G025800 Carya illinoinensis HOM05D005972 ORTHO05D007548 2.1e-142 509.6 375 66.7
Gohir.A06G170300 Gossypium hirsutum HOM05D005972 ORTHO05D007548 2.1e-142 509.6 378 65.3
RcHm_v2.0_Chr4g0438261 Rosa chinensis HOM05D005972 ORTHO05D007548 3.5e-142 508.8 376 65.7
Actinidia28072 Actinidia chinensis HOM05D005972 ORTHO05D007548 6.0e-142 508.1 376 65.4
TWI73G1071 Tripterygium wilfordii HOM05D005972 ORTHO05D007548 6.0e-142 508.1 379 65.4
Gohir.D06G178100 Gossypium hirsutum HOM05D005972 ORTHO05D007548 1.3e-141 506.9 378 64.6
Atru.chr12.548 Acer truncatum HOM05D005972 ORTHO05D007548 1.8e-141 506.5 371 67.4
vmacro19910 Vaccinium macrocarpon HOM05D005972 ORTHO05D007548 1.8e-141 506.5 377 66.8
Dinv24228 Davidia involucrata HOM05D001691 ORTHO05D007548 3.0e-141 505.8 361 68.4
CAN.G1513.3 Capsicum annuum HOM05D005972 ORTHO05D007548 3.9e-141 505.4 377 65.0
Haze_07503 Corylus avellana HOM05D005972 ORTHO05D007548 5.1e-141 505.0 375 65.9
Thecc.04G023500 Theobroma cacao HOM05D005972 ORTHO05D007548 5.1e-141 505.0 378 64.3
Duzib106G0263 Durio zibethinus HOM05D005972 ORTHO05D007548 1.5e-140 503.4 378 64.6
ClCG05G021510 Citrullus lanatus HOM05D005972 ORTHO05D007548 4.3e-140 501.9 379 64.9
COL.COLO4_27930 Corchorus olitorius HOM05D005972 ORTHO05D007548 4.3e-140 501.9 380 63.9
FAN12G3642 Fragaria x ananassa HOM05D005972 ORTHO05D007548 4.3e-140 501.9 376 64.4
PGR142G0064 Punica granatum HOM05D005972 ORTHO05D007548 5.6e-140 501.5 377 64.2
FvH4_4g29980 Fragaria vesca HOM05D005972 ORTHO05D007548 2.1e-139 499.6 376 64.1
Thecc.10G118600 Theobroma cacao HOM05D005972 ORTHO05D007548 2.8e-139 499.2 378 64.3
FAN07G1127 Fragaria x ananassa HOM05D005972 ORTHO05D007548 3.7e-139 498.8 376 63.6
HanXRQChr11g0337671 Helianthus annuus HOM05D005972 ORTHO05D007548 3.7e-139 498.8 377 62.9
Sopen11g002990 Solanum pennellii HOM05D005972 ORTHO05D007548 1.1e-138 497.3 375 64.0
Manes.16G061300 Manihot esculenta HOM05D005972 ORTHO05D007548 1.8e-138 496.5 377 64.5
FAN22G0246 Fragaria x ananassa HOM05D005972 ORTHO05D007548 4.0e-138 495.4 376 63.6
Solyc11g007070.2 Solanum lycopersicum HOM05D005972 ORTHO05D007548 4.0e-138 495.4 375 63.7
Sed0010539 Sechium edule HOM05D005972 ORTHO05D007548 6.9e-138 494.6 379 64.1
CsaV3_5G035730 Cucumis sativus L. HOM05D005972 ORTHO05D007548 1.7e-136 490.0 379 62.8
Lsat_1_v5_gn_7_80540 Lactuca sativa HOM05D005972 ORTHO05D007548 2.2e-136 489.6 377 62.6
Cpa.g.sc36.20 Carica papaya HOM05D005972 ORTHO05D007548 6.4e-136 488.0 377 62.1
Ciclev10031864m.g Citrus clementina HOM05D005972 ORTHO05D007548 2.5e-135 486.1 371 65.8
Oeu017286.1 Olea europaea HOM05D005972 ORTHO05D007548 5.5e-135 485.0 377 64.2
FAN17G2742 Fragaria x ananassa HOM05D005972 ORTHO05D007548 1.2e-134 483.8 388 61.3
CANSAT80G0182 Cannabis sativa HOM05D005972 ORTHO05D007548 3.5e-134 482.3 379 63.1
MELO3C012375.2 Cucumis melo HOM05D005972 ORTHO05D007548 6.0e-134 481.5 379 61.5
EL10Ac5g12767 Beta vulgaris HOM05D005972 ORTHO05D007548 1.0e-133 480.7 377 62.1
THA.LOC104808523 Tarenaya hassleriana HOM05D005972 ORTHO05D007548 1.5e-132 476.9 375 61.1
MSTRG.27825 Avicennia marina HOM05D005972 ORTHO05D007548 7.4e-132 474.6 375 62.7
Migut.N01012 Erythranthe guttata HOM05D005972 ORTHO05D007548 2.4e-130 469.5 383 60.6
MD16G1060700 Malus domestica HOM05D005972 ORTHO05D007548 3.1e-130 469.2 365 64.4
PSO782G4197 Papaver somniferum HOM05D005972 ORTHO05D007548 2.0e-129 466.5 376 60.1
Ah.12g057320 Amaranthus hybridus HOM05D005972 ORTHO05D007548 2.6e-129 466.1 379 59.1
SGA_v2.0_scaffold145G36053 Striga asiatica HOM05D005972 ORTHO05D007548 3.4e-129 465.7 378 60.3
PSO063G2120 Papaver somniferum HOM05D005972 ORTHO05D007548 2.2e-128 463.0 376 60.1
Thhalv10025456m.g Eutrema salsugineum HOM05D005972 ORTHO05D007548 3.2e-127 459.1 381 59.6
BcaNung00313 Brassica carinata HOM05D005972 ORTHO05D007548 9.3e-127 457.6 376 59.3
BraA01t02169Z Brassica rapa HOM05D005972 ORTHO05D007548 2.7e-126 456.1 376 59.6
A01p22560 Brassica napus HOM05D005972 ORTHO05D007548 1.0e-125 454.1 376 59.3
C01p28060 Brassica napus HOM05D005972 ORTHO05D007548 2.3e-125 453.0 376 59.0
CARHR221700 Cardamine hirsuta HOM05D005972 ORTHO05D007548 2.3e-125 453.0 377 58.6
AT4G15010 Arabidopsis thaliana HOM05D005972 ORTHO05D007548 3.0e-125 452.6 375 58.9
BcaC09g50180 Brassica carinata HOM05D005972 ORTHO05D007548 3.0e-125 452.6 376 59.0
BolC1t02740H Brassica oleracea HOM05D005972 ORTHO05D007548 3.0e-125 452.6 376 59.0
Carub.0007s2708 Capsella rubella HOM05D005972 ORTHO05D007548 5.1e-125 451.8 375 59.7
AL7G40820 Arabidopsis lyrata HOM05D005972 ORTHO05D007548 8.7e-125 451.1 375 58.7
BcaB02g07844 Brassica carinata HOM05D005972 ORTHO05D007548 1.3e-123 447.2 377 58.9
Aqoxy4G02449 Aquilegia oxysepala HOM05D005972 ORTHO05D007548 2.2e-123 446.4 406 55.7
Aa31LG9G2330 Aethionema arabicum HOM05D005972 ORTHO05D007548 8.2e-123 444.5 377 58.9
Sc22g0000350 Simmondsia chinensis HOM05D005972 ORTHO05D007548 1.2e-121 440.7 378 58.7
ATR0594G009 Amborella trichopoda HOM05D005972 ORTHO05D007548 5.0e-120 435.3 376 57.2
SalBow6G6672 Salvia bowleyana HOM05D005972 ORTHO05D007548 4.2e-119 432.2 426 51.2
CDE04G1870 Ceratophyllum demersum HOM05D005972 ORTHO05D007548 3.6e-118 429.1 375 55.7
ATR0174G007 Amborella trichopoda HOM05D005972 ORTHO05D007548 3.0e-117 426.0 385 55.1
Peaxi162Scf00152g01221 Petunia axillaris HOM05D005972 ORTHO05D007548 4.8e-115 418.7 375 56.3
Nn6g35524 Nelumbo nucifera HOM05D005972 ORTHO05D007548 9.1e-114 414.5 377 56.5
MBI03_g03956_MAGBIO Magnolia biondii HOM05D005972 ORTHO05D007548 2.0e-113 413.3 375 55.5
DCAR_006139 Daucus carota HOM05D005972 ORTHO05D007548 2.8e-107 392.9 314 62.7
HPP92_021056 Vanilla planifolia HOM05D005972 ORTHO05D007548 1.3e-104 384.0 375 50.4
ECA236G4176 Erigeron canadensis HOM05D005972 ORTHO05D007548 4.4e-100 369.0 267 65.5
Sabra16G0132100 Salix brachista HOM05D005972 ORTHO05D007548 1.6e-94 350.5 273 60.8
Zm00001eb427070 Zea mays HOM05D005972 ORTHO05D007548 4.7e-94 349.0 369 47.7
SEGI_29488 Sequoiadendron giganteum HOM05D005972 ORTHO05D007548 6.1e-94 348.6 375 45.9
unitig_747.g21237 Utricularia gibba HOM05D005972 ORTHO05D007548 5.0e-88 328.9 407 47.7
SHI11404 Sapria himalayana HOM05D005972 ORTHO05D007548 2.8e-83 313.2 276 56.9
Mapoly0188s0014 Marchantia polymorpha HOM05D005972 ORTHO05D007548 9.1e-82 308.1 368 43.2
Cc02_g21900 Coffea canephora HOM05D005972 ORTHO05D007548 2.0e-76 290.4 183 74.3
COL.COLO4_10011 Corchorus olitorius HOM05D005972 ORTHO05D007548 5.9e-73 278.9 265 55.1
Pp3c15_20500 Physcomitrium patens HOM05D005972 ORTHO05D007548 1.0e-72 278.1 381 38.8
Sp7g13170 Schrenkiella parvula HOM05D005972 ORTHO05D007548 8.1e-46 188.7 169 54.4
Aqoxy3G01225 Aquilegia oxysepala HOM05D005972 ORTHO05D007548 3.4e-44 183.3 166 54.8
C06p16620 Brassica napus HOM05D005972 ORTHO05D007548 1.3e-43 181.4 224 45.1
BolC6t36864H Brassica oleracea HOM05D005972 ORTHO05D007548 1.3e-43 181.4 224 45.1
A05p16900 Brassica napus HOM05D005972 ORTHO05D007548 1.9e-42 177.6 138 58.7
Os04g0527500 Oryza sativa ssp. japonica HOM05D005972 ORTHO05D007548 7.8e-41 172.2 121 66.9
SpUn0490_0010 Schrenkiella parvula HOM05D005972 ORTHO05D007548 1.7e-40 171.0 120 64.2
BcaC08g44257 Brassica carinata HOM05D005972 ORTHO05D024007 1.6e-38 164.5 139 54.7
Cc02_g21910 Coffea canephora HOM05D005972 ORTHO05D007548 1.4e-37 161.4 135 57.8
CAN.G730.4 Capsicum annuum HOM05D005972 ORTHO05D007548 1.9e-31 141.0 153 51.0
CAN.G730.17 Capsicum annuum HOM05D005972 ORTHO05D007548 9.9e-28 128.6 107 62.6
BraA05t20595Z Brassica rapa HOM05D005972 ORTHO05D007548 2.4e-26 124.0 369 28.2
HanXRQChr15g0481161 Helianthus annuus HOM05D005972 ORTHO05D007548 9.3e-26 122.1 115 51.3
CBR_g51824 Chara braunii HOM05D005972 ORTHO05D007548 9.0e-21 105.5 350 27.1
CSS0032497 Camellia sinensis var. sinensis HOM05D001087 ORTHO05D007548 4.6e-17 93.2 87 56.3
CAN.G730.12 Capsicum annuum HOM05D005972 ORTHO05D007548 1.1e-13 82.0 60 70.0
CAN.G730.21 Capsicum annuum HOM05D005972 ORTHO05D007548 3.4e-12 77.0 52 73.1
CAN.G1940.2 Capsicum annuum HOM05D005972 ORTHO05D007548 1.3e-11 75.1 49 65.3
A05p16910 Brassica napus HOM05D005972 ORTHO05D007548 2.9e-11 73.9 57 61.4
Zm00001eb076720 Zea mays HOM05D005972 ORTHO05D007548 2.1e-09 67.8 62 59.7
COL.COLO4_10012 Corchorus olitorius HOM05D005972 ORTHO05D007548 2.7e-09 67.4 71 52.1
SMO356G0048 Selaginella moellendorffii HOM05D001142 ORTHO05D004628 6.1e-09 66.2 360 22.8
arahy.Tifrunner.gnm1.ann1.L3LYUI Arachis hypogaea HOM05D005383 ORTHO05D031493 1.3e-08 65.1 44 70.5
CSS0030864 Camellia sinensis var. sinensis HOM05D000451 ORTHO05D000351 2.3e-08 64.3 78 48.7
CAN.G730.13 Capsicum annuum HOM05D005972 ORTHO05D007548 5.1e-08 63.2 37 78.4
arahy.Tifrunner.gnm1.ann1.03MD5J Arachis hypogaea HOM05D000575 ORTHO05D011349 6.7e-08 62.8 78 46.2
arahy.Tifrunner.gnm1.ann1.A2403X Arachis hypogaea HOM05D000406 ORTHO05D008572 3.3e-07 60.5 141 33.3
unitig_747.g21455 Utricularia gibba HOM05D000883 ORTHO05D002942 4.3e-07 60.1 114 30.7
GSVIVG01017089001 Vitis vinifera HOM05D001142 ORTHO05D004628 9.7e-07 58.9 365 21.1
arahy.Tifrunner.gnm1.ann1.9A5XZY Arachis hypogaea HOM05D005972 ORTHO05D031493 1.3e-06 58.5 83 44.6
Gohir.A12G194400 Gossypium hirsutum HOM05D000177 ORTHO05D002987 1.3e-06 58.5 227 27.8
Mapoly0013s0203 Marchantia polymorpha HOM05D000883 ORTHO05D003260 1.3e-06 58.5 269 26.4
vmacro16956 Vaccinium macrocarpon HOM05D001142 ORTHO05D004628 1.6e-06 58.2 344 21.5
arahy.Tifrunner.gnm1.ann1.YJH68W Arachis hypogaea HOM05D005972 ORTHO05D083016 2.2e-06 57.8 44 61.4
PSO782G1702 Papaver somniferum HOM05D001142 ORTHO05D004628 2.8e-06 57.4 349 23.2
Ca_10378_v3 Cicer arietinum L. HOM05D000406 ORTHO05D008572 3.7e-06 57.0 139 31.7
Ca_29656_v3 Cicer arietinum L. HOM05D000406 ORTHO05D008572 3.7e-06 57.0 139 31.7
Duzib205G0582 Durio zibethinus HOM05D000177 ORTHO05D002987 3.7e-06 57.0 181 29.3
PGSC0003DMG400016843 Solanum tuberosum HOM05D000406 ORTHO05D008572 3.7e-06 57.0 157 28.7
DCAR_012431 Daucus carota HOM05D000406 ORTHO05D008572 4.8e-06 56.6 128 31.2
Gohir.D12G196900 Gossypium hirsutum HOM05D000177 ORTHO05D002987 4.8e-06 56.6 181 29.3
Gorai.008G211500 Gossypium raimondii HOM05D000177 ORTHO05D002987 4.8e-06 56.6 181 29.3
Lj5g0014031 Lotus japonicus HOM05D000406 ORTHO05D008572 4.8e-06 56.6 126 31.7
HPP92_001618 Vanilla planifolia HOM05D000076 ORTHO05D002916 4.8e-06 56.6 122 30.3
AL8G45150 Arabidopsis lyrata HOM05D001367 ORTHO05D005289 6.3e-06 56.2 304 22.7
Lsat_1_v5_gn_9_5181 Lactuca sativa HOM05D000406 ORTHO05D008572 6.3e-06 56.2 159 27.7
A07p45510 Brassica napus HOM05D001142 ORTHO05D004628 8.2e-06 55.8 253 23.3
BraA07t32053Z Brassica rapa HOM05D001142 ORTHO05D004628 8.2e-06 55.8 253 23.3
MELO3C024239.2 Cucumis melo HOM05D001142 ORTHO05D004628 8.2e-06 55.8 132 31.1


User provided reference genes

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