Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G31485 Trifolium pratense HOM05D003533 ORTHO05D004009 3.6e-32 141.0 70 100.0
Psat0s489g0040 Pisum sativum HOM05D003533 ORTHO05D004009 4.1e-28 127.5 70 90.0
Ca_16210_v3 Cicer arietinum L. HOM05D003533 ORTHO05D004009 2.0e-27 125.2 70 85.7
Medtr3g078420 Medicago truncatula HOM05D003533 ORTHO05D004009 1.4e-25 119.0 72 86.1
Lj1g0014022 Lotus japonicus HOM05D003533 ORTHO05D004009 5.5e-25 117.1 72 83.3
Phvul.009G182200 Phaseolus vulgaris HOM05D003533 ORTHO05D004009 8.8e-23 109.8 71 80.3
Glyma.04G178500 Glycine max HOM05D003533 ORTHO05D004009 7.4e-22 106.7 70 78.6
Glyma.06G186200 Glycine max HOM05D003533 ORTHO05D004009 8.2e-21 103.2 70 72.9
Medtr4g106500 Medicago truncatula HOM05D003533 ORTHO05D004009 4.2e-17 90.9 76 63.2
Lj4g0015145 Lotus japonicus HOM05D003533 ORTHO05D004009 1.6e-16 89.0 80 60.0
Duzib084G0973 Durio zibethinus HOM05D003533 ORTHO05D004009 6.7e-15 83.6 82 58.5
Thecc.03G004200 Theobroma cacao HOM05D003533 ORTHO05D004009 8.8e-15 83.2 79 58.2
TWI15G0955 Tripterygium wilfordii HOM05D003533 ORTHO05D004009 8.8e-15 83.2 74 59.5
Rhsim12G0161500 Rhododendron simsii HOM05D003533 ORTHO05D004009 2.6e-14 81.6 77 59.7
Glyma.05G033600 Glycine max HOM05D003533 ORTHO05D004009 4.4e-14 80.9 74 60.8
Oeu005054.1 Olea europaea HOM05D003533 ORTHO05D004009 4.4e-14 80.9 74 63.5
Oeu005690.1 Olea europaea HOM05D003533 ORTHO05D004009 5.7e-14 80.5 74 62.2
Thecc.03G004000 Theobroma cacao HOM05D003533 ORTHO05D004009 5.7e-14 80.5 79 57.0
vmacro16587 Vaccinium macrocarpon HOM05D003533 ORTHO05D004009 5.7e-14 80.5 76 57.9
TPR.G37447 Trifolium pratense HOM05D003533 ORTHO05D004009 7.4e-14 80.1 77 58.4
Phvul.003G196800 Phaseolus vulgaris HOM05D003533 ORTHO05D004009 9.7e-14 79.7 74 56.8
TWI81G0654 Tripterygium wilfordii HOM05D003533 ORTHO05D004009 1.7e-13 79.0 74 56.8
CSS0013527 Camellia sinensis var. sinensis HOM05D003533 ORTHO05D004009 3.7e-13 77.8 81 54.3
CSS0016862 Camellia sinensis var. sinensis HOM05D003533 ORTHO05D004009 3.7e-13 77.8 81 54.3
TAR622G1413 Trochodendron aralioides HOM05D003533 ORTHO05D004009 3.7e-13 77.8 76 59.2
Lalb_Chr12g0201361 Lupinus albus HOM05D003533 ORTHO05D004009 6.3e-13 77.0 78 56.4
Manes.14G070400 Manihot esculenta HOM05D003533 ORTHO05D004009 6.3e-13 77.0 80 53.8
Glyma.17G093500 Glycine max HOM05D003533 ORTHO05D004009 8.2e-13 76.6 77 57.1
HanXRQChr09g0237871 Helianthus annuus HOM05D003533 ORTHO05D004009 8.2e-13 76.6 72 56.9
Lsat_1_v5_gn_1_12101 Lactuca sativa HOM05D003533 ORTHO05D004009 8.2e-13 76.6 83 51.8
Manes.06G100300 Manihot esculenta HOM05D003533 ORTHO05D004009 1.1e-12 76.3 81 54.3
TAR629G1875 Trochodendron aralioides HOM05D003533 ORTHO05D004009 2.4e-12 75.1 77 55.8
ECA247G1125 Erigeron canadensis HOM05D003533 ORTHO05D004009 4.1e-12 74.3 78 50.0
CiPaw.12G022900 Carya illinoinensis HOM05D003533 ORTHO05D004009 5.3e-12 73.9 80 56.2
Gohir.A05G319400 Gossypium hirsutum HOM05D003533 ORTHO05D004009 5.3e-12 73.9 77 55.8
Gohir.D05G321600 Gossypium hirsutum HOM05D003533 ORTHO05D004009 5.3e-12 73.9 77 55.8
Gorai.009G345100 Gossypium raimondii HOM05D003533 ORTHO05D004009 5.3e-12 73.9 77 55.8
QL10p012332 Quercus lobata HOM05D003533 ORTHO05D004009 1.2e-11 72.8 79 53.2
COL.COLO4_37881 Corchorus olitorius HOM05D003533 ORTHO05D004009 2.0e-11 72.0 76 56.6
Lalb_Chr12g0201351 Lupinus albus HOM05D003533 ORTHO05D004009 2.0e-11 72.0 78 53.8
QL03p067197 Quercus lobata HOM05D003533 ORTHO05D004009 2.0e-11 72.0 76 53.9
Eucgr.B00337 Eucalyptus grandis HOM05D003533 ORTHO05D004009 4.5e-11 70.9 78 53.8
Hma1.2p1_0160F.1_g070540 Hydrangea macrophylla HOM05D003533 ORTHO05D004009 5.9e-11 70.5 79 54.4
CANSAT54G2961 Cannabis sativa HOM05D003533 ORTHO05D004009 7.7e-11 70.1 76 53.9
Migut.L01388 Erythranthe guttata HOM05D003533 ORTHO05D004009 1.0e-10 69.7 72 56.9
MBI14_g31145_MAGBIO Magnolia biondii HOM05D003533 ORTHO05D004009 1.0e-10 69.7 74 55.4
PGR083G0433 Punica granatum HOM05D003533 ORTHO05D004009 1.0e-10 69.7 84 52.4
FAN07G1024 Fragaria x ananassa HOM05D003533 ORTHO05D004009 1.3e-10 69.3 74 51.4
FAN17G1844 Fragaria x ananassa HOM05D003533 ORTHO05D004009 1.3e-10 69.3 74 51.4
unitig_62.g23572 Utricularia gibba HOM05D006519 ORTHO05D008306 1.3e-10 69.3 75 53.3
FAN22G0766 Fragaria x ananassa HOM05D003533 ORTHO05D004009 1.7e-10 68.9 74 51.4
Aqoxy3G03117 Aquilegia oxysepala HOM05D003533 ORTHO05D004009 2.9e-10 68.2 81 49.4
MBI14_g31147_MAGBIO Magnolia biondii HOM05D003533 ORTHO05D004009 3.8e-10 67.8 75 53.3
FvH4_4g35190 Fragaria vesca HOM05D003533 ORTHO05D004009 5.0e-10 67.4 74 54.1
Nitab4.5_0002059g0100 Nicotiana tabacum HOM05D003533 ORTHO05D004009 5.0e-10 67.4 79 51.9
PGSC0003DMG400022647 Solanum tuberosum HOM05D003533 ORTHO05D004009 6.5e-10 67.0 74 48.6
Migut.E00134 Erythranthe guttata HOM05D003533 ORTHO05D004009 8.5e-10 66.6 71 49.3
Hma1.2p1_0002F.1_g002860 Hydrangea macrophylla HOM05D003533 ORTHO05D004009 8.5e-10 66.6 73 52.1
RcHm_v2.0_Chr4g0444801 Rosa chinensis HOM05D003533 ORTHO05D004009 8.5e-10 66.6 74 52.7
FAN12G1992 Fragaria x ananassa HOM05D003533 ORTHO05D004009 1.5e-09 65.9 74 52.7
Thecc.02G240400 Theobroma cacao HOM05D003533 ORTHO05D004009 1.9e-09 65.5 76 51.3
PSO013G0048 Papaver somniferum HOM05D003533 ORTHO05D004009 3.2e-09 64.7 73 50.7
Rhsim12G0161400 Rhododendron simsii HOM05D003533 ORTHO05D004009 3.2e-09 64.7 66 54.5
Ah.02g112790 Amaranthus hybridus HOM05D003533 ORTHO05D004009 4.2e-09 64.3 84 47.6
CiPaw.06G076000 Carya illinoinensis HOM05D003533 ORTHO05D004009 4.2e-09 64.3 76 50.0
CiPaw.06G076100 Carya illinoinensis HOM05D003533 ORTHO05D004009 4.2e-09 64.3 76 50.0
CiPaw.06G076200 Carya illinoinensis HOM05D003533 ORTHO05D004009 4.2e-09 64.3 76 50.0
BcaB03g12939 Brassica carinata HOM05D003533 ORTHO05D004009 7.2e-09 63.5 76 47.4
Nitab4.5_0002059g0090 Nicotiana tabacum HOM05D003533 ORTHO05D004009 7.2e-09 63.5 81 48.1
PSO013G0065 Papaver somniferum HOM05D003533 ORTHO05D004009 7.2e-09 63.5 83 45.8
Peaxi162Scf01141g00003 Petunia axillaris HOM05D003533 ORTHO05D004009 7.2e-09 63.5 81 49.4
C08p42830 Brassica napus HOM05D003533 ORTHO05D004009 9.4e-09 63.2 68 51.5
BolC8t51839H Brassica oleracea HOM05D003533 ORTHO05D004009 9.4e-09 63.2 68 51.5
CARHR019640 Cardamine hirsuta HOM05D003533 ORTHO05D004009 9.4e-09 63.2 78 44.9
Eucgr.K02881 Eucalyptus grandis HOM05D003533 ORTHO05D004009 9.4e-09 63.2 78 48.7
Sed0002579 Sechium edule HOM05D003533 ORTHO05D004009 9.4e-09 63.2 73 49.3
A09p59550 Brassica napus HOM05D003533 ORTHO05D004009 1.6e-08 62.4 83 45.8
CiPaw.06G076300 Carya illinoinensis HOM05D003533 ORTHO05D004009 1.6e-08 62.4 76 48.7
Cc11_g14110 Coffea canephora HOM05D003533 ORTHO05D004009 1.6e-08 62.4 79 50.6
MELO3C017124.2 Cucumis melo HOM05D003533 ORTHO05D004009 1.6e-08 62.4 85 49.4
AL5G27512 Arabidopsis lyrata HOM05D003533 ORTHO05D004009 2.1e-08 62.0 74 50.0
Migut.I00058 Erythranthe guttata HOM05D003533 ORTHO05D004009 2.1e-08 62.0 69 52.2
Hma1.2p1_0572F.1_g180980 Hydrangea macrophylla HOM05D003533 ORTHO05D004009 2.1e-08 62.0 81 44.4
Rhsim12G0161300 Rhododendron simsii HOM05D003533 ORTHO05D004009 2.1e-08 62.0 67 50.7
BcaB03g14468 Brassica carinata HOM05D003533 ORTHO05D004009 2.7e-08 61.6 81 46.9
COL.COLO4_21432 Corchorus olitorius HOM05D003533 ORTHO05D004009 2.7e-08 61.6 78 46.2
BcaC07g41276 Brassica carinata HOM05D003533 ORTHO05D004009 3.6e-08 61.2 85 43.5
CAN.G159.12 Capsicum annuum HOM05D003533 ORTHO05D004009 4.7e-08 60.8 78 48.7
Glyma.14G206400 Glycine max HOM05D003533 ORTHO05D004009 4.7e-08 60.8 46 67.4
Sc04g0002090 Simmondsia chinensis HOM05D003533 ORTHO05D004009 4.7e-08 60.8 87 40.2
Aa31LG4G16780 Aethionema arabicum HOM05D003533 ORTHO05D004009 6.1e-08 60.5 79 44.3
BraA09t41332Z Brassica rapa HOM05D003533 ORTHO05D004009 6.1e-08 60.5 68 50.0
HanXRQChr02g0043831 Helianthus annuus HOM05D003533 ORTHO05D222724 6.1e-08 60.5 53 58.5
BcaB07g31922 Brassica carinata HOM05D003533 ORTHO05D004009 8.0e-08 60.1 84 42.9
CSS0048422 Camellia sinensis var. sinensis HOM05D003533 ORTHO05D004009 8.0e-08 60.1 67 50.7
Nitab4.5_0002312g0100 Nicotiana tabacum HOM05D003533 ORTHO05D004009 8.0e-08 60.1 82 45.1
AT1G19020 Arabidopsis thaliana HOM05D003533 ORTHO05D004009 1.0e-07 59.7 85 41.2
MBI14_g31148_MAGBIO Magnolia biondii HOM05D003533 ORTHO05D011084 1.0e-07 59.7 69 50.7
Sp1g16980 Schrenkiella parvula HOM05D003533 ORTHO05D004009 1.0e-07 59.7 87 40.2
Carub.0005s1428 Capsella rubella HOM05D003533 ORTHO05D004009 1.4e-07 59.3 72 47.2
CiPaw.11G032200 Carya illinoinensis HOM05D003533 ORTHO05D004009 1.4e-07 59.3 87 46.0
Ciclev10023101m.g Citrus clementina HOM05D003533 ORTHO05D004009 1.4e-07 59.3 82 42.7
Nitab4.5_0002312g0110 Nicotiana tabacum HOM05D003533 ORTHO05D004009 1.4e-07 59.3 80 47.5
Nitab4.5_0003386g0040 Nicotiana tabacum HOM05D003533 ORTHO05D004009 1.4e-07 59.3 74 48.6
DCAR_026103 Daucus carota HOM05D003533 ORTHO05D004009 1.8e-07 58.9 70 52.9
unitig_22.g6479 Utricularia gibba HOM05D003533 ORTHO05D004009 1.8e-07 58.9 74 50.0
Zm00001eb254120 Zea mays HOM05D003533 ORTHO05D004009 1.8e-07 58.9 74 47.3
Oeu017591.1 Olea europaea HOM05D003533 ORTHO05D004009 2.3e-07 58.5 78 42.3
Sopen05g002310 Solanum pennellii HOM05D003533 ORTHO05D004009 2.3e-07 58.5 74 48.6
A06p15230 Brassica napus HOM05D003533 ORTHO05D004009 3.0e-07 58.2 84 42.9
BraA06t24637Z Brassica rapa HOM05D003533 ORTHO05D004009 3.0e-07 58.2 84 42.9
Thhalv10009213m.g Eutrema salsugineum HOM05D003533 ORTHO05D004009 3.0e-07 58.2 87 42.5
Lsat_1_v5_gn_1_11280 Lactuca sativa HOM05D003533 ORTHO05D004009 3.0e-07 58.2 72 44.4
MD16G1084900 Malus domestica HOM05D003533 ORTHO05D004009 3.0e-07 58.2 80 45.0
Solyc03g113810.1 Solanum lycopersicum HOM05D003533 ORTHO05D004009 3.0e-07 58.2 78 47.4
Solyc05g006390.1 Solanum lycopersicum HOM05D003533 ORTHO05D004009 3.0e-07 58.2 72 51.4
A08p30040 Brassica napus HOM05D003533 ORTHO05D004009 4.0e-07 57.8 74 45.9
BraA08t34939Z Brassica rapa HOM05D003533 ORTHO05D004009 4.0e-07 57.8 74 45.9
FAN18G0586 Fragaria x ananassa HOM05D003533 ORTHO05D004009 4.0e-07 57.8 76 48.7
ATR0712G042 Amborella trichopoda HOM05D003533 ORTHO05D004009 5.2e-07 57.4 81 43.2
Os02g0740600 Oryza sativa ssp. japonica HOM05D003533 ORTHO05D004009 5.2e-07 57.4 70 48.6
AL1G31580 Arabidopsis lyrata HOM05D003533 ORTHO05D004009 6.7e-07 57.0 83 39.8
Thhalv10010873m.g Eutrema salsugineum HOM05D003533 ORTHO05D004009 6.7e-07 57.0 77 44.2
SalBow2G1603 Salvia bowleyana HOM05D003533 ORTHO05D004009 6.7e-07 57.0 70 45.7
SalBow2G3186 Salvia bowleyana HOM05D003533 ORTHO05D004009 6.7e-07 57.0 70 45.7
Sp5g13860 Schrenkiella parvula HOM05D003533 ORTHO05D004009 6.7e-07 57.0 74 45.9
Sopen03g032860 Solanum pennellii HOM05D003533 ORTHO05D004009 6.7e-07 57.0 78 46.2
CARHR156900 Cardamine hirsuta HOM05D003533 ORTHO05D004009 1.5e-06 55.8 83 43.4
DCAR_016506 Daucus carota HOM05D003533 ORTHO05D004009 1.5e-06 55.8 75 48.0
Cc11_g14120 Coffea canephora HOM05D003533 ORTHO05D004009 2.0e-06 55.5 75 46.7
ECA247G3580 Erigeron canadensis HOM05D003533 ORTHO05D004009 2.6e-06 55.1 74 44.6
FAN13G2147 Fragaria x ananassa HOM05D003533 ORTHO05D004009 2.6e-06 55.1 80 48.8
C08p19120 Brassica napus HOM05D003533 ORTHO05D004009 3.3e-06 54.7 66 47.0
Os06g0239200 Oryza sativa ssp. japonica HOM05D003533 ORTHO05D004009 3.3e-06 54.7 71 43.7
BolC8t49535H Brassica oleracea HOM05D003533 ORTHO05D004009 4.4e-06 54.3 66 47.0
MD06G1181300 Malus domestica HOM05D003533 ORTHO05D004009 4.4e-06 54.3 78 46.2
PGSC0003DMG400024583 Solanum tuberosum HOM05D003533 ORTHO05D004009 5.7e-06 53.9 78 44.9
Lsat_1_v5_gn_1_11220 Lactuca sativa HOM05D003533 ORTHO05D004009 7.5e-06 53.5 72 43.1
ATR0712G093 Amborella trichopoda HOM05D003533 ORTHO05D004009 9.7e-06 53.1 75 44.0


User provided reference genes

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