Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G31479 Trifolium pratense HOM05D004862 ORTHO05D005841 1.3e-210 736.1 363 100.0
Medtr4g094315 Medicago truncatula HOM05D004862 ORTHO05D005841 4.8e-197 691.0 342 95.3
Psat7g096360 Pisum sativum HOM05D004862 ORTHO05D005841 3.3e-190 668.3 342 92.1
Ca_29818_v3 Cicer arietinum L. HOM05D004862 ORTHO05D005841 9.0e-188 660.2 342 90.1
arahy.Tifrunner.gnm1.ann1.34Q84K Arachis hypogaea HOM05D004862 ORTHO05D005841 1.0e-178 630.2 342 85.1
arahy.Tifrunner.gnm1.ann1.WE1E8S Arachis hypogaea HOM05D004862 ORTHO05D005841 2.2e-178 629.0 342 84.8
Glyma.08G075600 Glycine max HOM05D004862 ORTHO05D005841 2.2e-178 629.0 342 86.8
Glyma.05G121000 Glycine max HOM05D004862 ORTHO05D005841 1.1e-177 626.7 342 85.4
Phvul.002G205600 Phaseolus vulgaris HOM05D004862 ORTHO05D005841 2.7e-176 622.1 342 85.7
Lj4g0019477 Lotus japonicus HOM05D004862 ORTHO05D005841 2.2e-173 612.5 343 84.8
VMungo0251G1232 Vigna mungo HOM05D004862 ORTHO05D005841 2.2e-173 612.5 367 80.7
Lalb_Chr07g0189371 Lupinus albus HOM05D004862 ORTHO05D005841 2.4e-172 609.0 345 83.8
Lj5A244T54 Lonicera japonica HOM05D004862 ORTHO05D005841 3.4e-171 605.1 342 82.2
Dinv24234 Davidia involucrata HOM05D004862 ORTHO05D005841 2.2e-170 602.4 346 80.9
Thecc.02G156500 Theobroma cacao HOM05D004862 ORTHO05D005841 2.2e-170 602.4 345 81.4
CiPaw.13G145700 Carya illinoinensis HOM05D004862 ORTHO05D005841 1.4e-169 599.7 343 81.9
CSS0027197 Camellia sinensis var. sinensis HOM05D004862 ORTHO05D005841 1.9e-169 599.4 353 79.6
Gohir.A01G012300 Gossypium hirsutum HOM05D004862 ORTHO05D005841 3.2e-169 598.6 345 79.7
CSS0014529 Camellia sinensis var. sinensis HOM05D004862 ORTHO05D005841 7.2e-169 597.4 353 79.3
RcHm_v2.0_Chr3g0454151 Rosa chinensis HOM05D004862 ORTHO05D005841 1.6e-168 596.3 342 82.2
Duzib132G0210 Durio zibethinus HOM05D004862 ORTHO05D005841 4.7e-168 594.7 345 80.3
Gohir.A13G061500 Gossypium hirsutum HOM05D004862 ORTHO05D005841 1.0e-167 593.6 342 80.1
MD12G1223100 Malus domestica HOM05D004862 ORTHO05D005841 2.3e-167 592.4 342 79.8
DCAR_021834 Daucus carota HOM05D004862 ORTHO05D005841 3.0e-167 592.0 342 79.8
Gorai.002G015300 Gossypium raimondii HOM05D004862 ORTHO05D005841 3.0e-167 592.0 345 79.1
Aqoxy6G00342 Aquilegia oxysepala HOM05D004862 ORTHO05D005841 3.9e-167 591.7 342 81.0
Gohir.D01G013500 Gossypium hirsutum HOM05D004862 ORTHO05D005841 3.9e-167 591.7 345 79.1
FAN14G4788 Fragaria x ananassa HOM05D004862 ORTHO05D005841 5.2e-167 591.3 342 81.3
FAN14G5837 Fragaria x ananassa HOM05D004862 ORTHO05D005841 5.2e-167 591.3 342 81.3
Nn1g06191 Nelumbo nucifera HOM05D004862 ORTHO05D005841 5.2e-167 591.3 342 79.8
FAN05G4126 Fragaria x ananassa HOM05D004862 ORTHO05D005841 1.1e-166 590.1 342 81.0
Rhsim11G0133700 Rhododendron simsii HOM05D004862 ORTHO05D005841 1.1e-166 590.1 349 78.2
Gohir.D13G060400 Gossypium hirsutum HOM05D004862 ORTHO05D005841 1.5e-166 589.7 342 79.5
Manes.14G165200 Manihot esculenta HOM05D004862 ORTHO05D005841 1.5e-166 589.7 342 80.4
Ciclev10015108m.g Citrus clementina HOM05D004862 ORTHO05D005841 2.6e-166 589.0 342 79.5
Lsat_1_v5_gn_9_117961 Lactuca sativa HOM05D004862 ORTHO05D005841 2.6e-166 589.0 342 79.8
Prupe.6G329700 Prunus persica HOM05D004862 ORTHO05D005841 2.6e-166 589.0 342 80.1
Cfa010154 Carpinus fangiana HOM05D004862 ORTHO05D005841 5.7e-166 587.8 342 80.1
FvH4_6g05370 Fragaria vesca HOM05D004862 ORTHO05D005841 5.7e-166 587.8 342 80.7
Haze_23539 Corylus avellana HOM05D004862 ORTHO05D005841 7.4e-166 587.4 342 80.7
COL.COLO4_33088 Corchorus olitorius HOM05D004862 ORTHO05D005841 9.7e-166 587.0 345 79.7
FAN02G3155 Fragaria x ananassa HOM05D004862 ORTHO05D005841 1.3e-165 586.6 342 80.7
CANSAT54G0577 Cannabis sativa HOM05D004862 ORTHO05D005841 4.8e-165 584.7 343 79.9
AUR62003397 Chenopodium quinoa HOM05D004862 ORTHO05D005841 4.8e-165 584.7 342 77.5
Gorai.013G068500 Gossypium raimondii HOM05D004862 ORTHO05D005841 6.3e-165 584.3 356 77.0
Nitab4.5_0005079g0020 Nicotiana tabacum HOM05D004862 ORTHO05D005841 1.4e-164 583.2 349 78.2
FAN09G3019 Fragaria x ananassa HOM05D004862 ORTHO05D005841 1.8e-164 582.8 342 79.8
Hund06875 Selenicereus undatus HOM05D004862 ORTHO05D005841 1.8e-164 582.8 349 76.8
Nitab4.5_0000078g0200 Nicotiana tabacum HOM05D004862 ORTHO05D005841 2.0e-163 579.3 349 77.9
Cc02_g18820 Coffea canephora HOM05D004862 ORTHO05D005841 1.5e-161 573.2 343 78.1
Ah.04g163010 Amaranthus hybridus HOM05D004862 ORTHO05D005841 3.2e-161 572.0 342 77.5
PGR042G3925 Punica granatum HOM05D004862 ORTHO05D005841 4.2e-161 571.6 342 77.2
Lj9A317G73 Lonicera japonica HOM05D004862 ORTHO05D005841 7.2e-161 570.9 349 77.1
EL10Ac4g08938 Beta vulgaris HOM05D004862 ORTHO05D005841 1.2e-160 570.1 342 77.2
PSO675G5038 Papaver somniferum HOM05D004862 ORTHO05D005841 2.7e-160 568.9 343 77.3
Solyc10g047120.2 Solanum lycopersicum HOM05D004862 ORTHO05D005841 2.7e-160 568.9 342 77.2
ClCG09G014610 Citrullus lanatus HOM05D004862 ORTHO05D005841 3.6e-160 568.5 342 78.1
Sopen10g017280 Solanum pennellii HOM05D004862 ORTHO05D005841 8.0e-160 567.4 342 76.9
THA.LOC104818254 Tarenaya hassleriana HOM05D004862 ORTHO05D005841 8.0e-160 567.4 342 76.6
ECA240G2004 Erigeron canadensis HOM05D004862 ORTHO05D005841 1.8e-159 566.2 331 80.1
Sed0027136 Sechium edule HOM05D004862 ORTHO05D005841 4.0e-159 565.1 342 77.8
CAN.G1.65 Capsicum annuum HOM05D004862 ORTHO05D005841 8.8e-159 563.9 342 76.0
vmacro01803 Vaccinium macrocarpon HOM05D004862 ORTHO05D005841 8.8e-159 563.9 430 65.6
CsaV3_7G022230 Cucumis sativus L. HOM05D004862 ORTHO05D005841 1.2e-158 563.5 342 77.2
Thhalv10004120m.g Eutrema salsugineum HOM05D004862 ORTHO05D005841 1.2e-158 563.5 343 76.7
TWI23G0249 Tripterygium wilfordii HOM05D004862 ORTHO05D005841 1.2e-158 563.5 342 76.9
MELO3C012691.2 Cucumis melo HOM05D004862 ORTHO05D005841 2.6e-158 562.4 342 76.9
HanXRQChr03g0065771 Helianthus annuus HOM05D004862 ORTHO05D005841 4.4e-158 561.6 342 76.6
PSO541G6054 Papaver somniferum HOM05D004862 ORTHO05D005841 1.7e-157 559.7 348 75.9
Potri.001G207000 Populus trichocarpa HOM05D004862 ORTHO05D005841 1.7e-157 559.7 342 76.6
Sc09g0004450 Simmondsia chinensis HOM05D004862 ORTHO05D005841 6.3e-157 557.8 342 75.1
CARHR147430 Cardamine hirsuta HOM05D004862 ORTHO05D005841 1.1e-156 557.0 342 75.7
AT3G26410 Arabidopsis thaliana HOM05D004862 ORTHO05D005841 1.8e-156 556.2 342 75.7
PGSC0003DMG400017691 Solanum tuberosum HOM05D004862 ORTHO05D005841 1.8e-156 556.2 378 70.6
MBI06_g20970_MAGBIO Magnolia biondii HOM05D004862 ORTHO05D005841 4.1e-156 555.1 347 77.8
GSVIVG01029751001 Vitis vinifera HOM05D004862 ORTHO05D005841 5.3e-156 554.7 342 77.2
AL5G15180 Arabidopsis lyrata HOM05D004862 ORTHO05D005841 1.6e-155 553.1 342 75.1
Aa31LG2G6120 Aethionema arabicum HOM05D004862 ORTHO05D005841 2.0e-155 552.7 342 74.6
BcaB07g30229 Brassica carinata HOM05D004862 ORTHO05D005841 3.5e-155 552.0 342 74.3
A06p42030 Brassica napus HOM05D004862 ORTHO05D005841 1.0e-154 550.4 342 75.1
BraA06t27120Z Brassica rapa HOM05D004862 ORTHO05D005841 1.0e-154 550.4 342 75.1
HPP92_004639 Vanilla planifolia HOM05D004862 ORTHO05D005841 1.0e-154 550.4 362 70.2
CDE02G2941 Ceratophyllum demersum HOM05D004862 ORTHO05D005841 1.3e-154 550.1 342 74.9
Carub.0005s0438 Capsella rubella HOM05D004862 ORTHO05D005841 2.9e-154 548.9 342 74.9
Sp2g15560 Schrenkiella parvula HOM05D004862 ORTHO05D005841 2.9e-154 548.9 342 74.6
ATR1136G066 Amborella trichopoda HOM05D004862 ORTHO05D005841 3.8e-154 548.5 346 74.6
BolC2t11381H Brassica oleracea HOM05D004862 ORTHO05D005841 3.8e-154 548.5 342 74.6
Oeu000228.1 Olea europaea HOM05D004862 ORTHO05D005841 3.8e-154 548.5 342 74.0
QL01p020593 Quercus lobata HOM05D004862 ORTHO05D005841 8.5e-154 547.4 438 63.0
SGA_v2.0_scaffold332G48937 Striga asiatica HOM05D004862 ORTHO05D005841 8.5e-154 547.4 342 75.4
C07p35450 Brassica napus HOM05D004862 ORTHO05D005841 1.5e-153 546.6 342 74.3
BolC7t44069H Brassica oleracea HOM05D004862 ORTHO05D005841 1.5e-153 546.6 342 74.3
HPP92_004630 Vanilla planifolia HOM05D004862 ORTHO05D005841 5.5e-153 544.7 362 69.6
MSTRG.16558 Avicennia marina HOM05D004862 ORTHO05D005841 7.2e-153 544.3 342 75.4
BraA02t08465Z Brassica rapa HOM05D004862 ORTHO05D005841 4.7e-152 541.6 342 73.4
BcaC03g17366 Brassica carinata HOM05D004862 ORTHO05D005841 4.4e-150 535.0 366 69.7
SEGI_34202 Sequoiadendron giganteum HOM05D004862 ORTHO05D005841 4.8e-149 531.6 342 72.8
Os02g0556400 Oryza sativa ssp. japonica HOM05D004862 ORTHO05D005841 8.3e-149 530.8 343 71.4
Migut.B00646 Erythranthe guttata HOM05D004862 ORTHO05D005841 5.4e-148 528.1 342 73.1
Sabra01G0160300 Salix brachista HOM05D004862 ORTHO05D005841 5.9e-147 524.6 426 61.5
SHI16537 Sapria himalayana HOM05D004862 ORTHO05D005841 2.9e-146 522.3 342 72.2
AUR62004780 Chenopodium quinoa HOM05D004862 ORTHO05D005841 2.8e-144 515.8 397 62.7
Ciclev10008412m.g Citrus clementina HOM05D004862 ORTHO05D005841 2.0e-139 499.6 342 70.5
C02p53070 Brassica napus HOM05D004862 ORTHO05D005841 3.5e-139 498.8 366 67.2
BcaNung06886 Brassica carinata HOM05D004862 ORTHO05D005841 7.8e-139 497.7 351 68.4
Mapoly0006s0193 Marchantia polymorpha HOM05D004862 ORTHO05D005841 1.1e-137 493.8 342 65.8
SalBow5G3806 Salvia bowleyana HOM05D004862 ORTHO05D005841 2.1e-136 489.6 431 58.5
Eucgr.G00660 Eucalyptus grandis HOM05D004862 ORTHO05D005841 1.0e-135 487.3 269 84.4
SalBow5G4932 Salvia bowleyana HOM05D004862 ORTHO05D005841 1.7e-133 479.9 456 55.3
CsaV3_7G014980 Cucumis sativus L. HOM05D004862 ORTHO05D005841 2.2e-133 479.6 300 75.3
SMO115G0021 Selaginella moellendorffii HOM05D004862 ORTHO05D005841 8.3e-133 477.6 346 64.7
Pp3c13_18080 Physcomitrium patens HOM05D004862 ORTHO05D005841 3.2e-132 475.7 342 63.2
Peaxi162Scf00003g03739 Petunia axillaris HOM05D004862 ORTHO05D005841 2.0e-131 473.0 269 81.0
A02p34570 Brassica napus HOM05D004862 ORTHO05D005841 1.1e-124 450.7 269 77.0
CBR_g37214 Chara braunii HOM05D004862 ORTHO05D005841 9.2e-124 447.6 362 58.3
TAR116G0002 Trochodendron aralioides HOM05D004862 ORTHO05D005841 7.8e-115 417.9 231 83.1
Atru.chr6.1121 Acer truncatum HOM05D004862 ORTHO05D005841 1.1e-105 387.5 218 81.2
CsaV3_UNG189490 Cucumis sativus L. HOM05D004862 ORTHO05D005841 1.0e-98 364.4 222 76.6
TAR628G0283 Trochodendron aralioides HOM05D004862 ORTHO05D005841 1.3e-93 347.4 185 87.0
Cpa.g.sc845.1 Carica papaya HOM05D004862 ORTHO05D005841 2.9e-93 346.3 185 88.1
SEGI_00112 Sequoiadendron giganteum HOM05D004862 ORTHO05D005841 4.2e-92 342.4 201 77.1
FAN05G4337 Fragaria x ananassa HOM05D004862 ORTHO05D005841 6.0e-91 338.6 185 84.9
C02p53050 Brassica napus HOM05D004862 ORTHO05D005841 4.5e-86 322.4 183 80.9
BolC2t11366H Brassica oleracea HOM05D004862 ORTHO05D005841 4.5e-86 322.4 191 79.1
BcaC03g17340 Brassica carinata HOM05D004862 ORTHO05D005841 7.6e-86 321.6 218 69.7
Zm00001eb243830 Zea mays HOM05D004862 ORTHO05D005841 1.3e-85 320.9 185 80.0
unitig_26.g9584 Utricularia gibba HOM05D004862 ORTHO05D005841 1.7e-85 320.5 232 64.2
MCO05G740 Micromonas commoda HOM05D004862 ORTHO05D005841 6.2e-80 302.0 362 42.3
Cre08.g359100 Chlamydomonas reinhardtii HOM05D004862 ORTHO05D005841 7.1e-76 288.5 292 47.6
PRCOL_00003583 Prasinoderma coloniale HOM05D004862 ORTHO05D005841 1.8e-74 283.9 357 42.6
CsaV3_7G015000 Cucumis sativus L. HOM05D004862 ORTHO05D005841 6.3e-72 275.4 159 81.1
CsaV3_UNG187480 Cucumis sativus L. HOM05D004862 ORTHO05D005841 6.3e-72 275.4 159 81.1
C02p52870 Brassica napus HOM05D004862 ORTHO05D005841 2.4e-71 273.5 185 71.4
CsaV3_7G014960 Cucumis sativus L. HOM05D004862 ORTHO05D005841 2.9e-69 266.5 159 79.9
Cfa021801 Carpinus fangiana HOM05D004862 ORTHO05D005841 4.4e-49 199.5 324 36.4
Ca_31280_v3 Cicer arietinum L. HOM05D004862 ORTHO05D005841 4.8e-48 196.1 106 85.8
CsaV3_7G014970 Cucumis sativus L. HOM05D004862 ORTHO05D005841 2.3e-42 177.2 94 89.4
unitig_26.g9585 Utricularia gibba HOM05D004862 ORTHO05D005841 3.0e-42 176.8 94 83.0
CsaV3_7G015010 Cucumis sativus L. HOM05D004862 ORTHO05D005841 8.8e-42 175.3 93 89.2
CsaV3_UNG197500 Cucumis sativus L. HOM05D004862 ORTHO05D005841 5.7e-41 172.6 106 77.4
AagrBONN_evm.TU.Sc2ySwM_344.4621 Anthoceros agrestis HOM05D004862 ORTHO05D005841 1.1e-39 168.3 143 55.9
BolC2t11379H Brassica oleracea HOM05D004862 ORTHO05D005841 2.9e-37 160.2 119 66.4
Ca_29817_v3 Cicer arietinum L. HOM05D004862 ORTHO05D005841 1.4e-34 151.4 68 98.5
Potri.003G022650 Populus trichocarpa HOM05D004862 ORTHO05D005841 3.5e-30 136.7 91 69.2
TAR628G0087 Trochodendron aralioides HOM05D004862 ORTHO05D005841 2.0e-22 110.9 67 76.1
Actinidia00239 Actinidia chinensis HOM05D004862 ORTHO05D005841 3.5e-22 110.2 87 58.6
Ca_25384_v3 Cicer arietinum L. HOM05D004862 ORTHO05D005841 3.1e-18 97.1 44 97.7
CsaV3_7G014950 Cucumis sativus L. HOM05D004862 ORTHO05D005841 5.2e-18 96.3 65 64.6
MCO05G371 Micromonas commoda HOM05D004862 ORTHO05D267887 2.2e-08 64.3 123 37.4


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