Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G31443 Trifolium pratense HOM05D003541 ORTHO05D004095 6.9e-90 334.0 169 100.0
Psat1g039360 Pisum sativum HOM05D003541 ORTHO05D004095 1.7e-64 249.6 147 82.3
Medtr6g085070 Medicago truncatula HOM05D003541 ORTHO05D004095 6.1e-62 241.1 147 81.0
Glyma.09G187400 Glycine max HOM05D003541 ORTHO05D004095 1.0e-53 213.8 148 73.0
Lj2g0005362 Lotus japonicus HOM05D003541 ORTHO05D004095 9.7e-52 207.2 147 72.8
Glyma.07G089400 Glycine max HOM05D003541 ORTHO05D004095 1.0e-48 197.2 210 55.7
Phvul.004G160400 Phaseolus vulgaris HOM05D003541 ORTHO05D004095 1.1e-47 193.7 209 53.6
arahy.Tifrunner.gnm1.ann1.5B91PZ Arachis hypogaea HOM05D003541 ORTHO05D004095 4.2e-47 191.8 147 70.1
arahy.Tifrunner.gnm1.ann1.SXG9J3 Arachis hypogaea HOM05D003541 ORTHO05D004095 4.7e-46 188.3 147 68.7
Lalb_Chr22g0352971 Lupinus albus HOM05D003541 ORTHO05D004095 2.3e-45 186.0 147 68.7
VMungo0464G0349 Vigna mungo HOM05D003541 ORTHO05D004095 5.2e-45 184.9 209 50.2
TPR.G21707 Trifolium pratense HOM05D003541 ORTHO05D004095 4.2e-39 165.2 151 62.3
Lj4g0015559 Lotus japonicus HOM05D003541 ORTHO05D004095 1.6e-38 163.3 147 59.2
Ca_17344_v3 Cicer arietinum L. HOM05D003541 ORTHO05D004095 4.7e-38 161.8 167 54.5
QL10p023576 Quercus lobata HOM05D003541 ORTHO05D004095 4.0e-37 158.7 148 58.8
Nitab4.5_0001599g0130 Nicotiana tabacum HOM05D003541 ORTHO05D004095 1.2e-36 157.1 150 59.3
Lalb_Chr14g0371311 Lupinus albus HOM05D003541 ORTHO05D004095 2.6e-36 156.0 147 60.5
Psat7g012440 Pisum sativum HOM05D003541 ORTHO05D004095 7.5e-36 154.5 155 56.1
Medtr8g103850 Medicago truncatula HOM05D003541 ORTHO05D004095 2.8e-35 152.5 155 56.1
Dinv07364 Davidia involucrata HOM05D003541 ORTHO05D004095 4.1e-34 148.7 148 56.1
Actinidia35078 Actinidia chinensis HOM05D003541 ORTHO05D004095 7.0e-34 147.9 148 56.1
TWI15G0244 Tripterygium wilfordii HOM05D003541 ORTHO05D004095 1.2e-33 147.1 147 57.8
COL.COLO4_16239 Corchorus olitorius HOM05D003541 ORTHO05D004095 2.7e-33 146.0 148 54.1
CAN.G438.122 Capsicum annuum HOM05D003541 ORTHO05D004095 1.0e-32 144.1 152 55.3
arahy.Tifrunner.gnm1.ann1.Q237M7 Arachis hypogaea HOM05D003541 ORTHO05D004095 1.7e-32 143.3 147 53.1
Atru.chr9.784 Acer truncatum HOM05D003541 ORTHO05D004095 2.9e-32 142.5 148 55.4
Eucgr.K02663 Eucalyptus grandis HOM05D003541 ORTHO05D004095 6.6e-32 141.4 148 52.7
Dinv40426 Davidia involucrata HOM05D003541 ORTHO05D004095 8.6e-32 141.0 148 57.4
Nitab4.5_0000410g0010 Nicotiana tabacum HOM05D003541 ORTHO05D004095 8.6e-32 141.0 150 55.3
GSVIVG01008249001 Vitis vinifera HOM05D003541 ORTHO05D004095 8.6e-32 141.0 148 57.4
Peaxi162Scf00015g00839 Petunia axillaris HOM05D003541 ORTHO05D004095 1.9e-31 139.8 151 53.6
PGSC0003DMG400005709 Solanum tuberosum HOM05D003541 ORTHO05D004095 2.5e-31 139.4 151 55.0
Potri.012G060600 Populus trichocarpa HOM05D003541 ORTHO05D004095 3.3e-31 139.0 148 52.7
Solyc03g119720.4 Solanum lycopersicum HOM05D003541 ORTHO05D004095 7.3e-31 137.9 151 53.6
CSS0035183 Camellia sinensis var. sinensis HOM05D003541 ORTHO05D004095 1.2e-30 137.1 148 54.7
MBI09_g04371_MAGBIO Magnolia biondii HOM05D003541 ORTHO05D004095 1.2e-30 137.1 149 53.0
PGR083G2725 Punica granatum HOM05D003541 ORTHO05D004095 1.6e-30 136.7 149 53.7
Cc04_g07430 Coffea canephora HOM05D003541 ORTHO05D004095 2.1e-30 136.3 148 53.4
Prupe.5G218200 Prunus persica HOM05D003541 ORTHO05D004095 2.8e-30 136.0 152 52.0
Sabra12G0043600 Salix brachista HOM05D003541 ORTHO05D004095 3.6e-30 135.6 148 51.4
Thecc.03G029700 Theobroma cacao HOM05D003541 ORTHO05D004095 4.7e-30 135.2 148 51.4
MSTRG.11321 Avicennia marina HOM05D003541 ORTHO05D004095 6.1e-30 134.8 149 55.0
Migut.I00385 Erythranthe guttata HOM05D003541 ORTHO05D004095 6.1e-30 134.8 149 54.4
Hma1.2p1_0340F.1_g129780 Hydrangea macrophylla HOM05D003541 ORTHO05D004095 5.2e-29 131.7 148 51.4
TWI81G0124 Tripterygium wilfordii HOM05D003541 ORTHO05D004095 5.2e-29 131.7 147 54.4
Sc04g0003690 Simmondsia chinensis HOM05D003541 ORTHO05D004095 8.9e-29 131.0 148 50.7
Ciclev10019107m.g Citrus clementina HOM05D003541 ORTHO05D004095 1.2e-28 130.6 149 53.7
VMungo0251G0053 Vigna mungo HOM05D003541 ORTHO05D004095 1.2e-28 130.6 157 49.7
Actinidia18941 Actinidia chinensis HOM05D003541 ORTHO05D004095 1.5e-28 130.2 148 52.7
Gohir.D11G006000 Gossypium hirsutum HOM05D003541 ORTHO05D004095 2.0e-28 129.8 149 49.7
PSO063G0435 Papaver somniferum HOM05D003541 ORTHO05D004095 2.6e-28 129.4 148 48.6
TAR371G0923 Trochodendron aralioides HOM05D003541 ORTHO05D004095 3.4e-28 129.0 148 51.4
CANSAT80G0782 Cannabis sativa HOM05D003541 ORTHO05D004095 4.4e-28 128.6 148 51.4
Oeu024322.1 Olea europaea HOM05D003541 ORTHO05D004095 4.4e-28 128.6 154 53.2
EL10Ac5g11259 Beta vulgaris HOM05D003541 ORTHO05D004095 5.8e-28 128.3 147 51.0
Aqoxy3G03927 Aquilegia oxysepala HOM05D003541 ORTHO05D004095 9.8e-28 127.5 148 52.0
Gorai.007G007200 Gossypium raimondii HOM05D003541 ORTHO05D004095 9.8e-28 127.5 149 49.0
Hma1.2p1_3191F.1_g333810 Hydrangea macrophylla HOM05D003541 ORTHO05D004095 9.8e-28 127.5 148 51.4
PSO782G5001 Papaver somniferum HOM05D003541 ORTHO05D004095 9.8e-28 127.5 148 48.0
SGA_v2.0_scaffold19G08810 Striga asiatica HOM05D003541 ORTHO05D004095 2.2e-27 126.3 149 51.7
Gohir.A11G006900 Gossypium hirsutum HOM05D003541 ORTHO05D004095 2.9e-27 125.9 149 48.3
PGSC0003DMG400004445 Solanum tuberosum HOM05D003541 ORTHO05D004095 3.7e-27 125.6 151 54.3
Ah.11g047040 Amaranthus hybridus HOM05D003541 ORTHO05D004095 4.9e-27 125.2 148 52.0
Ah.02g114480 Amaranthus hybridus HOM05D003541 ORTHO05D004095 6.4e-27 124.8 150 49.3
Sopen12g017870 Solanum pennellii HOM05D003541 ORTHO05D004095 6.4e-27 124.8 151 54.3
AUR62032198 Chenopodium quinoa HOM05D003541 ORTHO05D004095 8.3e-27 124.4 150 52.0
Rhsim12G0144300 Rhododendron simsii HOM05D003541 ORTHO05D004095 8.3e-27 124.4 151 53.0
THA.LOC104812131 Tarenaya hassleriana HOM05D003541 ORTHO05D004095 1.4e-26 123.6 149 51.7
AUR62036965 Chenopodium quinoa HOM05D003541 ORTHO05D004095 1.9e-26 123.2 150 51.3
Phvul.002G315000 Phaseolus vulgaris HOM05D003541 ORTHO05D004095 1.9e-26 123.2 155 49.0
Hund02522 Selenicereus undatus HOM05D003541 ORTHO05D004095 1.9e-26 123.2 147 49.0
Solyc12g038160.2 Solanum lycopersicum HOM05D003541 ORTHO05D004095 4.1e-26 122.1 151 53.6
Cpa.g.sc13.27 Carica papaya HOM05D003541 ORTHO05D004095 5.4e-26 121.7 148 50.7
Nn3g17767 Nelumbo nucifera HOM05D003541 ORTHO05D004095 9.2e-26 120.9 148 49.3
C06p48040 Brassica napus HOM05D003541 ORTHO05D004095 1.2e-25 120.6 149 51.7
CDE04G1171 Ceratophyllum demersum HOM05D003541 ORTHO05D004095 1.2e-25 120.6 148 44.6
Sp1g16400 Schrenkiella parvula HOM05D003541 ORTHO05D004095 1.2e-25 120.6 153 49.7
Sed0000678 Sechium edule HOM05D003541 ORTHO05D004095 1.2e-25 120.6 150 50.7
Aa31LG7G3130 Aethionema arabicum HOM05D003541 ORTHO05D004095 2.0e-25 119.8 150 50.7
A07p39760 Brassica napus HOM05D003541 ORTHO05D004095 2.7e-25 119.4 150 52.7
BolC6t39839H Brassica oleracea HOM05D003541 ORTHO05D004095 2.7e-25 119.4 149 51.7
AL1G30890 Arabidopsis lyrata HOM05D003541 ORTHO05D004095 3.5e-25 119.0 150 48.7
ClCG04G011250 Citrullus lanatus HOM05D003541 ORTHO05D004095 3.5e-25 119.0 150 50.0
Sed0001727 Sechium edule HOM05D003541 ORTHO05D004095 3.5e-25 119.0 150 48.7
A07p39770 Brassica napus HOM05D003541 ORTHO05D004095 4.6e-25 118.6 149 51.0
BraA07t31524Z Brassica rapa HOM05D003541 ORTHO05D004095 6.0e-25 118.2 149 51.0
CARHR067030 Cardamine hirsuta HOM05D003541 ORTHO05D004095 6.0e-25 118.2 149 47.7
CsaV3_1G006500 Cucumis sativus L. HOM05D003541 ORTHO05D004095 7.8e-25 117.9 150 50.0
AT1G18460 Arabidopsis thaliana HOM05D003541 ORTHO05D004095 1.0e-24 117.5 154 48.7
HPP92_024716 Vanilla planifolia HOM05D003541 ORTHO05D004095 1.0e-24 117.5 153 49.0
RcHm_v2.0_Chr7g0184731 Rosa chinensis HOM05D003541 ORTHO05D004095 3.0e-24 115.9 151 49.7
Lalb_Chr05g0222641 Lupinus albus HOM05D003541 ORTHO05D004095 3.9e-24 115.5 136 52.2
BcaB03g15736 Brassica carinata HOM05D003541 ORTHO05D004095 5.0e-24 115.2 149 47.7
Hund10017 Selenicereus undatus HOM05D003541 ORTHO05D004095 5.0e-24 115.2 165 44.2
Sc10g0009510 Simmondsia chinensis HOM05D004837 ORTHO05D005741 5.0e-24 115.2 152 50.0
Carub.0001s1809 Capsella rubella HOM05D003541 ORTHO05D004095 6.6e-24 114.8 153 48.4
Eucgr.B00703 Eucalyptus grandis HOM05D003541 ORTHO05D004095 6.6e-24 114.8 148 48.0
BraA07t30599Z Brassica rapa HOM05D003541 ORTHO05D004095 2.5e-23 112.8 150 47.3
Carub.0002s2069 Capsella rubella HOM05D003541 ORTHO05D004095 2.5e-23 112.8 153 48.4
Sopen03g038560 Solanum pennellii HOM05D003541 ORTHO05D004095 2.5e-23 112.8 140 51.4
Thhalv10006963m.g Eutrema salsugineum HOM05D003541 ORTHO05D004095 3.3e-23 112.5 150 49.3
C06p33740 Brassica napus HOM05D003541 ORTHO05D004095 4.3e-23 112.1 151 47.7
CARHR019070 Cardamine hirsuta HOM05D003541 ORTHO05D004095 7.3e-23 111.3 149 47.0
BcaC07g41329 Brassica carinata HOM05D003541 ORTHO05D004095 9.5e-23 110.9 148 46.6
Thhalv10018209m.g Eutrema salsugineum HOM05D003541 ORTHO05D004095 9.5e-23 110.9 149 48.3
FAN13G2824 Fragaria x ananassa HOM05D003541 ORTHO05D004095 9.5e-23 110.9 158 46.8
A07p29580 Brassica napus HOM05D003541 ORTHO05D004095 1.2e-22 110.5 150 46.7
Peaxi162Scf00804g00007 Petunia axillaris HOM05D003541 ORTHO05D004095 1.2e-22 110.5 148 49.3
C08p43390 Brassica napus HOM05D003541 ORTHO05D004095 2.1e-22 109.8 149 47.7
BolC6t38489H Brassica oleracea HOM05D003541 ORTHO05D004095 2.1e-22 109.8 151 47.7
BolC8t51888H Brassica oleracea HOM05D003541 ORTHO05D004095 2.1e-22 109.8 149 47.7
SGA_v2.0_scaffold25G10984 Striga asiatica HOM05D003541 ORTHO05D004095 2.1e-22 109.8 152 46.7
FAN18G0309 Fragaria x ananassa HOM05D003541 ORTHO05D004095 2.8e-22 109.4 158 46.8
FAN18G3376 Fragaria x ananassa HOM05D003541 ORTHO05D004095 2.8e-22 109.4 158 46.8
FAN04G2140 Fragaria x ananassa HOM05D003541 ORTHO05D004095 3.6e-22 109.0 156 45.5
C08p18630 Brassica napus HOM05D003541 ORTHO05D004095 4.7e-22 108.6 151 46.4
BolC8t49489H Brassica oleracea HOM05D003541 ORTHO05D004095 4.7e-22 108.6 151 46.4
A09p59950 Brassica napus HOM05D003541 ORTHO05D004095 6.2e-22 108.2 149 47.0
BraA09t41366Z Brassica rapa HOM05D003541 ORTHO05D004095 6.2e-22 108.2 149 47.0
PGR044G0196 Punica granatum HOM05D003541 ORTHO05D004095 6.2e-22 108.2 148 44.6
CiPaw.16G084500 Carya illinoinensis HOM05D003541 ORTHO05D004095 8.0e-22 107.8 148 48.6
FAN08G0854 Fragaria x ananassa HOM05D003541 ORTHO05D004095 8.0e-22 107.8 158 46.2
BcaC08g45614 Brassica carinata HOM05D003541 ORTHO05D004095 1.8e-21 106.7 149 47.0
A08p30400 Brassica napus HOM05D003541 ORTHO05D004095 1.8e-21 106.7 151 46.4
Nitab4.5_0002043g0080 Nicotiana tabacum HOM05D003541 ORTHO05D004095 1.8e-21 106.7 142 47.2
Zm00001eb132660 Zea mays HOM05D003541 ORTHO05D004095 1.8e-21 106.7 152 42.8
Gorai.007G007100 Gossypium raimondii HOM05D003541 ORTHO05D004095 2.3e-21 106.3 152 45.4
MD14G1222700 Malus domestica HOM05D003541 ORTHO05D004095 2.3e-21 106.3 152 43.4
MD06G1212200 Malus domestica HOM05D003541 ORTHO05D004095 3.1e-21 105.9 152 44.7
ATR0681G201 Amborella trichopoda HOM05D003541 ORTHO05D004095 4.0e-21 105.5 150 44.7
Gohir.A11G006800 Gossypium hirsutum HOM05D003541 ORTHO05D004095 5.2e-21 105.1 151 45.0
DCAR_011345 Daucus carota HOM05D003541 ORTHO05D004095 6.8e-21 104.8 153 43.1
Duzib068G0226 Durio zibethinus HOM05D003541 ORTHO05D004095 6.8e-21 104.8 162 42.6
Gohir.D11G005900 Gossypium hirsutum HOM05D003541 ORTHO05D004095 6.8e-21 104.8 151 45.0
BcaNung05446 Brassica carinata HOM05D003541 ORTHO05D004095 1.5e-20 103.6 151 45.7
DCAR_011547 Daucus carota HOM05D003541 ORTHO05D004095 1.5e-20 103.6 153 44.4
SalBow5G5009 Salvia bowleyana HOM05D003541 ORTHO05D004095 3.4e-20 102.4 140 47.9
unitig_699.g19434 Utricularia gibba HOM05D003541 ORTHO05D004095 4.4e-20 102.1 151 48.3
HanXRQChr09g0269901 Helianthus annuus HOM05D003541 ORTHO05D004095 2.2e-19 99.8 154 43.5
Sp5g29120 Schrenkiella parvula HOM05D003541 ORTHO05D004095 2.9e-19 99.4 149 44.3
TPR.G31445 Trifolium pratense HOM05D003541 ORTHO05D004095 2.9e-19 99.4 147 44.9
BcaB03g12979 Brassica carinata HOM05D003541 ORTHO05D004095 1.1e-18 97.4 153 41.8
Lsat_1_v5_gn_4_115841 Lactuca sativa HOM05D003541 ORTHO05D004095 1.4e-18 97.1 152 41.4
Aa31LG4G4210 Aethionema arabicum HOM05D003541 ORTHO05D004095 4.1e-18 95.5 138 47.8
AT1G73920 Arabidopsis thaliana HOM05D003541 ORTHO05D004095 4.1e-18 95.5 148 41.9
Glyma.08G040100 Glycine max HOM05D003541 ORTHO05D004095 7.0e-18 94.7 150 42.0
Lsat_1_v5_gn_5_25181 Lactuca sativa HOM05D003541 ORTHO05D004095 7.0e-18 94.7 157 39.5
Lj5C146G11 Lonicera japonica HOM05D003541 ORTHO05D004095 7.0e-18 94.7 139 48.9
HanXRQChr05g0152881 Helianthus annuus HOM05D003541 ORTHO05D004095 9.2e-18 94.4 152 39.5
Manes.01G020100 Manihot esculenta HOM05D003541 ORTHO05D004095 1.2e-17 94.0 147 44.2
vmacro16455 Vaccinium macrocarpon HOM05D003541 ORTHO05D004095 6.0e-17 91.7 149 45.0
vmacro22487 Vaccinium macrocarpon HOM05D003541 ORTHO05D004095 6.0e-17 91.7 149 45.0
MELO3C002077.2 Cucumis melo HOM05D003541 ORTHO05D004095 1.7e-16 90.1 139 43.9
Haze_18628 Corylus avellana HOM05D003541 ORTHO05D004095 6.6e-16 88.2 110 50.0
AL2G33750 Arabidopsis lyrata HOM05D003541 ORTHO05D004095 1.5e-15 87.0 149 41.6
ECA246G2878 Erigeron canadensis HOM05D003541 ORTHO05D004095 1.9e-15 86.7 153 37.3
Nitab4.5_0000208g0180 Nicotiana tabacum HOM05D003541 ORTHO05D004095 1.9e-15 86.7 90 54.4
DCAR_023188 Daucus carota HOM05D003541 ORTHO05D004095 2.5e-15 86.3 153 42.5
DCAR_023189 Daucus carota HOM05D003541 ORTHO05D004095 2.5e-15 86.3 153 42.5
HanXRQChr16g0501751 Helianthus annuus HOM05D003541 ORTHO05D004095 6.2e-14 81.6 157 37.6
SEGI_10894 Sequoiadendron giganteum HOM05D003541 ORTHO05D004095 1.8e-13 80.1 159 34.0
Glyma.05G232700 Glycine max HOM05D003541 ORTHO05D004095 4.0e-13 79.0 135 43.7
AagrBONN_evm.TU.Sc2ySwM_362.2698 Anthoceros agrestis HOM05D003541 ORTHO05D004095 5.8e-12 75.1 158 36.1
SHI30433 Sapria himalayana HOM05D003541 ORTHO05D004095 2.2e-11 73.2 147 33.3
MBI16_g06256_MAGBIO Magnolia biondii HOM05D003541 ORTHO05D004095 2.4e-10 69.7 172 32.6
ECA232G0305 Erigeron canadensis HOM05D003541 ORTHO05D004095 4.1e-10 68.9 47 70.2
SMO164G0035 Selaginella moellendorffii HOM05D003541 ORTHO05D004095 7.8e-09 64.7 151 35.1
Pp3c19_13160 Physcomitrium patens HOM05D003541 ORTHO05D004095 1.0e-08 64.3 149 34.2
Manes.05G138900 Manihot esculenta HOM05D003541 ORTHO05D004095 3.3e-07 59.3 137 38.0
Mapoly0004s0087 Marchantia polymorpha HOM05D003541 ORTHO05D004095 2.8e-06 56.2 160 31.9
Pp3c8_18170 Physcomitrium patens HOM05D003541 ORTHO05D004095 3.6e-06 55.8 78 44.9
FvH4_5g12600 Fragaria vesca HOM05D003541 ORTHO05D004095 8.1e-06 54.7 106 37.7


User provided reference genes

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