Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G31422 Trifolium pratense HOM05D006859 ORTHO05D007990 1.8e-146 522.7 296 100.0
Medtr5g013280 Medicago truncatula HOM05D006859 ORTHO05D007990 1.1e-122 443.7 296 84.8
Psat2g176200 Pisum sativum HOM05D006859 ORTHO05D007990 7.0e-114 414.5 277 87.0
Lj2g0014108 Lotus japonicus HOM05D006859 ORTHO05D007990 2.5e-111 406.0 307 78.5
VMungo1215G2710 Vigna mungo HOM05D006859 ORTHO05D007990 7.3e-103 377.9 301 75.1
Phvul.002G001000 Phaseolus vulgaris HOM05D006859 ORTHO05D007990 9.5e-103 377.5 296 73.6
Glyma.01G205600 Glycine max HOM05D006859 ORTHO05D007990 2.7e-97 359.4 296 72.0
Lalb_Chr16g0379391 Lupinus albus HOM05D006859 ORTHO05D007990 1.2e-94 350.5 296 71.3
Ca_24604_v3 Cicer arietinum L. HOM05D006859 ORTHO05D007990 1.3e-91 340.5 303 68.6
QL12p009356 Quercus lobata HOM05D006859 ORTHO05D007990 5.1e-88 328.6 293 67.2
Prupe.5G059200 Prunus persica HOM05D006859 ORTHO05D007990 1.1e-87 327.4 294 67.3
FAN08G0582 Fragaria x ananassa HOM05D006859 ORTHO05D007990 4.3e-87 325.5 299 65.9
FvH4_5g20140 Fragaria vesca HOM05D006859 ORTHO05D007990 7.3e-87 324.7 298 65.4
FAN18G2706 Fragaria x ananassa HOM05D006859 ORTHO05D007990 1.2e-84 317.4 299 64.9
RcHm_v2.0_Chr7g0205091 Rosa chinensis HOM05D006859 ORTHO05D007990 5.8e-84 315.1 294 65.3
Dinv28858 Davidia involucrata HOM05D006859 ORTHO05D007990 1.7e-83 313.5 290 65.5
CSS0046225 Camellia sinensis var. sinensis HOM05D006859 ORTHO05D007990 2.9e-83 312.8 295 64.1
arahy.Tifrunner.gnm1.ann1.B2NILF Arachis hypogaea HOM05D006859 ORTHO05D007990 8.4e-83 311.2 307 65.5
arahy.Tifrunner.gnm1.ann1.WYE05V Arachis hypogaea HOM05D006859 ORTHO05D007990 8.4e-83 311.2 307 65.5
Gorai.004G193900 Gossypium raimondii HOM05D006859 ORTHO05D007990 2.4e-82 309.7 292 65.1
Gohir.A08G165800 Gossypium hirsutum HOM05D006859 ORTHO05D007990 5.4e-82 308.5 292 64.7
Gohir.D08G184600 Gossypium hirsutum HOM05D006859 ORTHO05D007990 2.1e-81 306.6 292 64.7
Duzib068G0861 Durio zibethinus HOM05D006859 ORTHO05D007990 1.8e-80 303.5 292 62.7
Duzib205G1414 Durio zibethinus HOM05D006859 ORTHO05D007990 1.9e-79 300.1 292 63.0
MD00G1165000 Malus domestica HOM05D006859 ORTHO05D007990 1.3e-78 297.4 294 64.6
TAR636G0545 Trochodendron aralioides HOM05D006859 ORTHO05D007990 4.8e-78 295.4 294 62.9
MD04G1050900 Malus domestica HOM05D006859 ORTHO05D007990 6.2e-78 295.0 293 64.2
Sabra03G0053000 Salix brachista HOM05D006859 ORTHO05D007990 6.2e-78 295.0 294 60.9
Actinidia25901 Actinidia chinensis HOM05D006859 ORTHO05D007990 3.1e-77 292.7 296 62.5
CANSAT21G2559 Cannabis sativa HOM05D006859 ORTHO05D007990 3.1e-77 292.7 294 60.5
vmacro00041 Vaccinium macrocarpon HOM05D006859 ORTHO05D007990 3.1e-77 292.7 288 63.2
Aqoxy7G00861 Aquilegia oxysepala HOM05D006859 ORTHO05D007990 5.3e-77 292.0 294 59.5
FAN04G1798 Fragaria x ananassa HOM05D006859 ORTHO05D007990 5.3e-77 292.0 298 61.4
Atru.chr9.1231 Acer truncatum HOM05D006859 ORTHO05D007990 9.9e-76 287.7 296 62.5
Potri.003G082200 Populus trichocarpa HOM05D006859 ORTHO05D007990 9.9e-76 287.7 294 60.2
PGR031G1874 Punica granatum HOM05D006859 ORTHO05D007990 1.3e-75 287.3 295 61.0
Nn1g00823 Nelumbo nucifera HOM05D006859 ORTHO05D007990 2.2e-75 286.6 295 60.7
Hund11327 Selenicereus undatus HOM05D006859 ORTHO05D007990 2.9e-75 286.2 297 58.9
Eucgr.D02124 Eucalyptus grandis HOM05D006859 ORTHO05D007990 8.4e-75 284.6 296 59.8
RhsimUnG0092900 Rhododendron simsii HOM05D006859 ORTHO05D007990 1.4e-74 283.9 295 60.7
MELO3C003330.2 Cucumis melo HOM05D006859 ORTHO05D007990 7.1e-74 281.6 289 58.8
Cc08_g11510 Coffea canephora HOM05D006859 ORTHO05D007990 2.1e-73 280.0 298 58.4
CiPaw.11G069300 Carya illinoinensis HOM05D006859 ORTHO05D007990 2.7e-73 279.6 259 62.2
Cpa.g.sc89.10 Carica papaya HOM05D006859 ORTHO05D007990 3.5e-73 279.3 300 61.3
TWI15G0070 Tripterygium wilfordii HOM05D006859 ORTHO05D007990 3.5e-73 279.3 292 59.2
Oeu017213.1 Olea europaea HOM05D006859 ORTHO05D007990 1.3e-72 277.3 303 58.4
PSO675G5712 Papaver somniferum HOM05D006859 ORTHO05D007990 7.4e-71 271.6 290 57.6
Migut.A01048 Erythranthe guttata HOM05D006859 ORTHO05D007990 1.3e-70 270.8 300 60.0
PSO717G0098 Papaver somniferum HOM05D006859 ORTHO05D007990 1.6e-70 270.4 290 57.9
EL10Ac5g12291 Beta vulgaris HOM05D006859 ORTHO05D007990 9.0e-69 264.6 291 58.8
Glyma.11G037300 Glycine max HOM05D006859 ORTHO05D007990 9.0e-69 264.6 230 65.2
Ciclev10021440m.g Citrus clementina HOM05D006859 ORTHO05D007990 2.0e-68 263.5 294 57.1
Manes.01G086700 Manihot esculenta HOM05D006859 ORTHO05D007990 3.2e-66 256.1 289 57.4
MBI04_g28364_MAGBIO Magnolia biondii HOM05D006859 ORTHO05D007990 4.2e-66 255.8 293 54.9
HanXRQChr06g0164541 Helianthus annuus HOM05D006859 ORTHO05D007990 8.7e-64 248.1 287 56.1
PGSC0003DMG400024153 Solanum tuberosum HOM05D006859 ORTHO05D007990 1.3e-62 244.2 317 53.6
Cfa012667 Carpinus fangiana HOM05D006859 ORTHO05D007990 2.4e-61 240.0 264 59.5
Gohir.D03G167400 Gossypium hirsutum HOM05D006859 ORTHO05D007990 1.1e-58 231.1 261 54.8
Lj2C227G12 Lonicera japonica HOM05D006859 ORTHO05D007990 1.4e-58 230.7 256 57.4
CsaV3_3G049860 Cucumis sativus L. HOM05D006859 ORTHO05D007990 2.5e-58 229.9 288 52.4
Lsat_1_v5_gn_1_53480 Lactuca sativa HOM05D006859 ORTHO05D007990 4.2e-58 229.2 287 51.2
Thecc.03G243500 Theobroma cacao HOM05D006859 ORTHO05D007990 5.5e-58 228.8 213 67.6
ECA236G3610 Erigeron canadensis HOM05D006859 ORTHO05D007990 1.2e-57 227.6 261 54.8
Nitab4.5_0000506g0100 Nicotiana tabacum HOM05D006859 ORTHO05D007990 2.3e-56 223.4 281 55.9
HPP92_014892 Vanilla planifolia HOM05D006859 ORTHO05D007990 3.9e-56 222.6 289 51.2
Actinidia02186 Actinidia chinensis HOM05D006859 ORTHO05D007990 5.1e-56 222.2 312 52.2
Sopen06g021040 Solanum pennellii HOM05D006859 ORTHO05D007990 1.9e-55 220.3 276 54.3
Nitab4.5_0003456g0040 Nicotiana tabacum HOM05D006859 ORTHO05D007990 1.6e-54 217.2 313 51.4
Gorai.003G177100 Gossypium raimondii HOM05D006859 ORTHO05D007990 2.8e-54 216.5 261 50.2
Zm00001eb391020 Zea mays HOM05D006859 ORTHO05D007990 1.4e-53 214.2 284 51.4
CARHR224240 Cardamine hirsuta HOM05D006859 ORTHO05D007990 1.8e-53 213.8 287 49.8
ATR0665G206 Amborella trichopoda HOM05D006859 ORTHO05D007990 3.1e-53 213.0 288 50.7
Thhalv10025654m.g Eutrema salsugineum HOM05D006859 ORTHO05D007990 3.1e-53 213.0 287 50.5
AT4G17540 Arabidopsis thaliana HOM05D006859 ORTHO05D007990 5.3e-53 212.2 289 49.8
Carub.0007s2385 Capsella rubella HOM05D006859 ORTHO05D007990 9.1e-53 211.5 288 49.7
Sp7g16620 Schrenkiella parvula HOM05D006859 ORTHO05D007990 9.1e-53 211.5 285 51.2
Gohir.A03G005200 Gossypium hirsutum HOM05D006859 ORTHO05D007990 1.5e-52 210.7 261 52.5
BcaC09g51632 Brassica carinata HOM05D006859 ORTHO05D007990 1.1e-50 204.5 282 49.6
BcaNung00082 Brassica carinata HOM05D006859 ORTHO05D007990 1.1e-50 204.5 284 50.0
A01p09620 Brassica napus HOM05D006859 ORTHO05D007990 5.5e-50 202.2 285 49.1
BraA01t00904Z Brassica rapa HOM05D006859 ORTHO05D007990 1.6e-49 200.7 285 48.8
BolC1t01085H Brassica oleracea HOM05D006859 ORTHO05D007990 7.9e-49 198.4 284 49.3
C01p11190 Brassica napus HOM05D006859 ORTHO05D007990 1.4e-48 197.6 284 49.3
DCAR_004596 Daucus carota HOM05D006859 ORTHO05D007990 6.7e-48 195.3 258 52.3
Os10g0563400 Oryza sativa ssp. japonica HOM05D006859 ORTHO05D007990 6.7e-48 195.3 287 48.4
Sc01g0008110 Simmondsia chinensis HOM05D006859 ORTHO05D007990 1.5e-47 194.1 205 60.0
unitig_8.g3018 Utricularia gibba HOM05D000481 ORTHO05D007990 4.4e-47 192.6 271 50.9
Solyc06g060890.4 Solanum lycopersicum HOM05D006859 ORTHO05D007990 5.7e-47 192.2 257 50.6
THA.LOC104798356 Tarenaya hassleriana HOM05D006859 ORTHO05D007990 7.4e-47 191.8 286 46.9
AUR62018861 Chenopodium quinoa HOM05D006859 ORTHO05D007990 1.3e-43 181.0 228 50.9
ClCG09G012800 Citrullus lanatus HOM05D006859 ORTHO05D007990 8.5e-43 178.3 278 43.9
SalBow6G1554 Salvia bowleyana HOM05D006859 ORTHO05D007990 1.1e-42 177.9 241 55.6
CDE11G0841 Ceratophyllum demersum HOM05D006859 ORTHO05D007990 2.1e-41 173.7 204 58.3
SGA_v2.0_scaffold199G41240 Striga asiatica HOM05D006859 ORTHO05D007990 3.0e-40 169.9 243 46.9
Hma1.2p1_0840F.1_g226470 Hydrangea macrophylla HOM05D006859 ORTHO05D007990 3.9e-40 169.5 272 44.1
AL7G37080 Arabidopsis lyrata HOM05D006859 ORTHO05D007990 7.4e-39 165.2 248 45.6
AUR62007150 Chenopodium quinoa HOM05D006859 ORTHO05D007990 1.1e-34 151.4 224 46.0
Aa31LG6G280 Aethionema arabicum HOM05D006859 ORTHO05D007990 2.5e-34 150.2 254 44.9
Peaxi162Scf00190g00099 Petunia axillaris HOM05D006859 ORTHO05D007990 2.5e-34 150.2 216 47.2
Glyma.11G037400 Glycine max HOM05D006859 ORTHO05D007990 8.0e-33 145.2 273 44.7
CAN.G62.4 Capsicum annuum HOM05D006859 ORTHO05D007990 1.4e-32 144.4 206 45.1
Sed0000052 Sechium edule HOM05D006859 ORTHO05D007990 2.0e-31 140.6 196 44.4
GSVIVG01007347001 Vitis vinifera HOM05D006859 ORTHO05D007990 5.0e-27 125.9 77 84.4
Oeu040677.2 Olea europaea HOM05D006859 ORTHO05D007990 6.5e-27 125.6 192 41.7
VMungo1215G2895 Vigna mungo HOM05D006859 ORTHO05D007990 7.2e-26 122.1 262 38.5
Phvul.002G001100 Phaseolus vulgaris HOM05D006859 ORTHO05D007990 9.4e-26 121.7 281 39.1
Glyma.01G205500 Glycine max HOM05D006859 ORTHO05D007990 1.3e-22 111.3 243 40.7
AagrBONN_evm.TU.Sc2ySwM_228.2564 Anthoceros agrestis HOM05D006859 ORTHO05D007990 3.5e-20 103.2 296 34.1
DCAR_008336 Daucus carota HOM05D002294 ORTHO05D002367 5.0e-19 99.4 266 33.8
Ah.07g199030 Amaranthus hybridus HOM05D006859 ORTHO05D007990 4.2e-18 96.3 61 85.2
GSVIVG01007348001 Vitis vinifera HOM05D006859 ORTHO05D007990 4.0e-16 89.7 119 47.1
COL.COLO4_21682 Corchorus olitorius HOM05D006859 ORTHO05D007990 1.5e-15 87.8 154 40.9
CBR_g52283 Chara braunii HOM05D006859 ORTHO05D007990 3.7e-14 83.2 323 34.4
Mapoly0075s0082 Marchantia polymorpha HOM05D006859 ORTHO05D007990 6.3e-14 82.4 170 44.1
PSO717G0090 Papaver somniferum HOM05D006859 ORTHO05D007990 4.5e-12 76.3 251 33.5
Pp3c27_6080 Physcomitrium patens HOM05D006859 ORTHO05D007990 2.8e-09 67.0 295 32.2
HPP92_014890 Vanilla planifolia HOM05D006859 ORTHO05D007990 4.7e-09 66.2 73 47.9
CDE11G0285 Ceratophyllum demersum HOM05D006859 ORTHO05D007990 3.0e-08 63.5 94 52.1


User provided reference genes

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