Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G31416 Trifolium pratense HOM05D005414 ORTHO05D006844 6.1e-52 207.2 106 100.0
arahy.Tifrunner.gnm1.ann1.X1PAW1 Arachis hypogaea HOM05D005414 ORTHO05D006844 2.3e-27 125.6 106 60.4
Lj5g0014662 Lotus japonicus HOM05D005414 ORTHO05D006844 2.3e-27 125.6 106 60.4
TPR.G17052 Trifolium pratense HOM05D005414 ORTHO05D006844 3.1e-27 125.2 106 62.3
Medtr1g097430 Medicago truncatula HOM05D005414 ORTHO05D006844 4.0e-27 124.8 106 64.2
Potri.002G062600 Populus trichocarpa HOM05D005414 ORTHO05D006844 1.5e-26 122.9 106 58.5
arahy.Tifrunner.gnm1.ann1.66PYZ2 Arachis hypogaea HOM05D005414 ORTHO05D006844 2.0e-26 122.5 106 58.5
VMungo0720G1060 Vigna mungo HOM05D005414 ORTHO05D006844 4.4e-26 121.3 106 61.3
Phvul.007G085100 Phaseolus vulgaris HOM05D005414 ORTHO05D006844 5.8e-26 120.9 106 61.3
Psat6g189560 Pisum sativum HOM05D005414 ORTHO05D006844 1.3e-25 119.8 106 61.3
Glyma.20G171300 Glycine max HOM05D005414 ORTHO05D006844 4.9e-25 117.9 106 59.4
Atru.chr13.1979 Acer truncatum HOM05D005414 ORTHO05D006844 6.4e-25 117.5 106 56.6
CiPaw.16G007400 Carya illinoinensis HOM05D005414 ORTHO05D006844 8.3e-25 117.1 106 55.7
QL02p036452 Quercus lobata HOM05D005414 ORTHO05D006844 8.3e-25 117.1 119 52.9
Sabra02G0050500 Salix brachista HOM05D005414 ORTHO05D006844 1.1e-24 116.7 124 49.2
Lalb_Chr02g0141631 Lupinus albus HOM05D005414 ORTHO05D006844 3.2e-24 115.2 106 58.5
Migut.C00158 Erythranthe guttata HOM05D005414 ORTHO05D006844 1.2e-23 113.2 106 52.8
PSO210G6322 Papaver somniferum HOM05D005414 ORTHO05D006844 1.6e-23 112.8 104 52.9
PSO170G2436 Papaver somniferum HOM05D005414 ORTHO05D006844 2.7e-23 112.1 104 52.9
Phvul.007G085000 Phaseolus vulgaris HOM05D005414 ORTHO05D006844 3.5e-23 111.7 106 56.6
DCAR_009609 Daucus carota HOM05D005414 ORTHO05D006844 4.6e-23 111.3 106 53.8
Ciclev10002272m.g Citrus clementina HOM05D005414 ORTHO05D006844 6.0e-23 110.9 106 54.7
Actinidia17760 Actinidia chinensis HOM05D005414 ORTHO05D006844 7.8e-23 110.5 106 53.8
Thecc.08G163500 Theobroma cacao HOM05D005414 ORTHO05D006844 7.8e-23 110.5 106 50.9
Duzib041G0057 Durio zibethinus HOM05D005414 ORTHO05D006844 1.3e-22 109.8 106 52.8
Sabra05G0151200 Salix brachista HOM05D005414 ORTHO05D006844 1.3e-22 109.8 106 52.8
CSS0025663 Camellia sinensis var. sinensis HOM05D005414 ORTHO05D006844 3.0e-22 108.6 106 52.8
Nn5g28873 Nelumbo nucifera HOM05D005414 ORTHO05D000799 3.0e-22 108.6 106 51.9
CSS0029717 Camellia sinensis var. sinensis HOM05D005414 ORTHO05D006844 3.9e-22 108.2 106 52.8
TAR628G0132 Trochodendron aralioides HOM05D005414 ORTHO05D000799 3.9e-22 108.2 106 52.8
Glyma.20G171400 Glycine max HOM05D005414 ORTHO05D006844 6.6e-22 107.5 106 56.6
Solyc04g072031.1 Solanum lycopersicum HOM05D005414 ORTHO05D006844 6.6e-22 107.5 106 50.9
Solyc04g072050.4 Solanum lycopersicum HOM05D005414 ORTHO05D006844 6.6e-22 107.5 106 50.9
Sopen04g028220 Solanum pennellii HOM05D005414 ORTHO05D006844 6.6e-22 107.5 106 50.9
PGSC0003DMG400031145 Solanum tuberosum HOM05D005414 ORTHO05D006844 6.6e-22 107.5 106 50.9
Manes.18G096200 Manihot esculenta HOM05D005414 ORTHO05D006844 8.6e-22 107.1 106 51.9
Prupe.8G044100 Prunus persica HOM05D005414 ORTHO05D006844 8.6e-22 107.1 106 53.8
GSVIVG01013697001 Vitis vinifera HOM05D005414 ORTHO05D006844 8.6e-22 107.1 106 53.8
HanXRQChr05g0144171 Helianthus annuus HOM05D005414 ORTHO05D006844 1.1e-21 106.7 106 48.1
Rhsim06G0093200 Rhododendron simsii HOM05D005414 ORTHO05D006844 1.5e-21 106.3 106 52.8
MD10G1038100 Malus domestica HOM05D005414 ORTHO05D006844 1.9e-21 105.9 106 52.8
PGR042G0638 Punica granatum HOM05D005414 ORTHO05D006844 1.9e-21 105.9 106 50.9
SalBow7G3693 Salvia bowleyana HOM05D005414 ORTHO05D006844 1.9e-21 105.9 106 50.9
BcaNung07190 Brassica carinata HOM05D005414 ORTHO05D006844 2.5e-21 105.5 104 51.9
Hma1.2p1_2282F.1_g318850 Hydrangea macrophylla HOM05D005414 ORTHO05D006844 2.5e-21 105.5 100 52.0
vmacro21198 Vaccinium macrocarpon HOM05D005414 ORTHO05D006844 3.3e-21 105.1 106 50.9
THA.LOC104809748 Tarenaya hassleriana HOM05D005414 ORTHO05D006844 5.6e-21 104.4 104 50.0
Cpa.g.sc26.122 Carica papaya HOM05D005414 ORTHO05D006844 7.3e-21 104.0 106 48.1
FAN15G1775 Fragaria x ananassa HOM05D005414 ORTHO05D006844 7.3e-21 104.0 106 50.0
Cc10_g06420 Coffea canephora HOM05D005414 ORTHO05D006844 9.5e-21 103.6 106 47.2
Thhalv10008541m.g Eutrema salsugineum HOM05D005414 ORTHO05D006844 9.5e-21 103.6 104 50.0
Oeu061453.3 Olea europaea HOM05D005414 ORTHO05D006844 9.5e-21 103.6 106 47.2
A09p41990 Brassica napus HOM05D005414 ORTHO05D006844 1.2e-20 103.2 104 50.0
BraA09t39686Z Brassica rapa HOM05D005414 ORTHO05D006844 1.2e-20 103.2 104 50.0
BolC5t30882H Brassica oleracea HOM05D005414 ORTHO05D006844 1.6e-20 102.8 104 51.0
BcaNung07397 Brassica carinata HOM05D005414 ORTHO05D006844 2.1e-20 102.4 104 51.0
C05p21870 Brassica napus HOM05D005414 ORTHO05D006844 2.1e-20 102.4 104 51.0
ECA232G1443 Erigeron canadensis HOM05D005414 ORTHO05D006844 2.1e-20 102.4 106 47.2
MBI04_g42207_MAGBIO Magnolia biondii HOM05D005414 ORTHO05D006844 2.8e-20 102.1 121 44.6
FvH4_2g12810 Fragaria vesca HOM05D005414 ORTHO05D006844 6.2e-20 100.9 106 48.1
Nitab4.5_0001000g0190 Nicotiana tabacum HOM05D005414 ORTHO05D006844 6.2e-20 100.9 106 46.2
Sp1g20260 Schrenkiella parvula HOM05D005414 ORTHO05D006844 8.1e-20 100.5 104 49.0
RcHm_v2.0_Chr6g0273701 Rosa chinensis HOM05D005414 ORTHO05D006844 1.1e-19 100.1 106 48.1
Aa31LG7G6700 Aethionema arabicum HOM05D005414 ORTHO05D006844 1.8e-19 99.4 104 48.1
FAN27G1467 Fragaria x ananassa HOM05D005414 ORTHO05D006844 1.8e-19 99.4 106 48.1
Aqoxy5G02011 Aquilegia oxysepala HOM05D005414 ORTHO05D006844 3.1e-19 98.6 106 44.3
Gohir.A06G116400 Gossypium hirsutum HOM05D005414 ORTHO05D006844 4.0e-19 98.2 106 46.2
MSTRG.24938 Avicennia marina HOM05D005414 ORTHO05D006844 5.2e-19 97.8 106 48.1
CAN.G564.21 Capsicum annuum HOM05D005414 ORTHO05D006844 5.2e-19 97.8 106 47.2
Sc26g0002600 Simmondsia chinensis HOM05D005414 ORTHO05D006844 5.2e-19 97.8 106 45.3
CAN.G564.22 Capsicum annuum HOM05D005414 ORTHO05D006844 8.9e-19 97.1 106 47.2
SGA_v2.0_scaffold188G40302 Striga asiatica HOM05D005414 ORTHO05D006844 8.9e-19 97.1 106 45.3
AT1G22750 Arabidopsis thaliana HOM05D005414 ORTHO05D006844 1.2e-18 96.7 104 49.0
Carub.0001s2226 Capsella rubella HOM05D005414 ORTHO05D006844 1.2e-18 96.7 104 49.0
Gorai.010G131400 Gossypium raimondii HOM05D005414 ORTHO05D006844 1.5e-18 96.3 106 46.2
AL1G36290 Arabidopsis lyrata HOM05D005414 ORTHO05D006844 2.0e-18 95.9 104 47.1
Eucgr.F02672 Eucalyptus grandis HOM05D005414 ORTHO05D006844 2.0e-18 95.9 106 43.4
Os06g0581300 Oryza sativa ssp. japonica HOM05D005414 ORTHO05D006844 2.0e-18 95.9 106 49.1
Gohir.D06G114900 Gossypium hirsutum HOM05D005414 ORTHO05D006844 7.5e-18 94.0 106 45.3
TWI60G0913 Tripterygium wilfordii HOM05D005414 ORTHO05D006844 7.5e-18 94.0 110 49.1
Peaxi162Scf00226g00114 Petunia axillaris HOM05D005414 ORTHO05D006844 1.3e-17 93.2 134 41.8
QL02p036925 Quercus lobata HOM05D005414 ORTHO05D006844 1.3e-17 93.2 188 35.1
CANSAT25G0738 Cannabis sativa HOM05D005414 ORTHO05D006844 2.2e-17 92.4 104 45.2
CDE05G1245 Ceratophyllum demersum HOM05D005414 ORTHO05D006844 6.4e-17 90.9 106 42.5
CDE05G3275 Ceratophyllum demersum HOM05D005414 ORTHO05D006844 6.4e-17 90.9 106 41.5
Zm00001eb385480 Zea mays HOM05D005414 ORTHO05D006844 1.4e-16 89.7 106 45.3
CARHR023110 Cardamine hirsuta HOM05D005414 ORTHO05D006844 7.1e-16 87.4 95 46.3
Hund26672 Selenicereus undatus HOM05D005414 ORTHO05D006844 2.1e-15 85.9 107 42.1
CsaV3_6G004870 Cucumis sativus L. HOM05D005414 ORTHO05D006844 6.6e-14 80.9 113 38.9
unitig_32.g11168 Utricularia gibba HOM05D005414 ORTHO05D006844 6.6e-14 80.9 106 41.5
Sed0023257 Sechium edule HOM05D005414 ORTHO05D006844 1.1e-13 80.1 106 40.6
MELO3C030042.2 Cucumis melo HOM05D005414 ORTHO05D006844 1.9e-13 79.3 106 41.5
Lsat_1_v5_gn_9_42481 Lactuca sativa HOM05D005414 ORTHO05D006844 1.2e-12 76.6 87 47.1
MELO3C019962.2 Cucumis melo HOM05D005414 ORTHO05D006844 2.1e-12 75.9 106 41.5
HanXRQChr11g0320131 Helianthus annuus HOM05D005414 ORTHO05D006844 2.1e-12 75.9 104 36.5
HanXRQChr11g0320121 Helianthus annuus HOM05D005414 ORTHO05D006844 2.3e-11 72.4 104 38.5
ECA232G3911 Erigeron canadensis HOM05D005414 ORTHO05D006844 6.8e-11 70.9 104 35.6
AUR62032103 Chenopodium quinoa HOM05D005414 ORTHO05D006844 1.5e-10 69.7 84 41.7
AUR62034915 Chenopodium quinoa HOM05D005414 ORTHO05D006844 7.6e-10 67.4 100 38.0
Potri.005G198600 Populus trichocarpa HOM05D005414 ORTHO05D006844 9.9e-10 67.0 106 38.7
HanXRQChr11g0320151 Helianthus annuus HOM05D005414 ORTHO05D006844 1.7e-09 66.2 106 31.1
CsaV3_6G004860 Cucumis sativus L. HOM05D005414 ORTHO05D006844 2.9e-09 65.5 106 37.7
Lsat_1_v5_gn_9_42501 Lactuca sativa HOM05D005414 ORTHO05D006844 4.9e-09 64.7 100 33.0
Lsat_1_v5_gn_4_170780 Lactuca sativa HOM05D005414 ORTHO05D006844 6.4e-09 64.3 101 34.7
HanXRQChr07g0196141 Helianthus annuus HOM05D005414 ORTHO05D006844 1.1e-08 63.5 97 40.2
Nitab4.5_0007691g0020 Nicotiana tabacum HOM05D005414 ORTHO05D006844 1.9e-08 62.8 50 52.0
Lsat_1_v5_gn_2_41300 Lactuca sativa HOM05D005414 ORTHO05D006844 5.4e-08 61.2 105 33.3
HanXRQChr15g0485041 Helianthus annuus HOM05D005414 ORTHO05D006844 2.7e-07 58.9 99 32.3
ATR1120G143 Amborella trichopoda HOM05D005414 ORTHO05D006844 3.0e-06 55.5 69 44.9
Lsat_1_v5_gn_1_83841 Lactuca sativa HOM05D005414 ORTHO05D006844 3.0e-06 55.5 96 30.2
Sed0017348 Sechium edule HOM05D005414 ORTHO05D006844 3.0e-06 55.5 49 46.9
FAN24G1739 Fragaria x ananassa HOM05D005414 ORTHO05D006844 5.1e-06 54.7 50 48.0
Lsat_1_v5_gn_1_83961 Lactuca sativa HOM05D005414 ORTHO05D006844 5.1e-06 54.7 96 33.3


User provided reference genes

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