Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G31404 Trifolium pratense HOM05D000520 ORTHO05D000399 9.2e-163 577.0 332 100.0
Medtr2g022240 Medicago truncatula HOM05D000520 ORTHO05D000399 5.6e-43 179.1 371 44.7
Medtr2g022250 Medicago truncatula HOM05D000520 ORTHO05D000399 2.2e-31 140.6 384 41.9
arahy.Tifrunner.gnm1.ann1.KQD4NT Arachis hypogaea HOM05D000520 ORTHO05D000399 2.4e-30 137.1 412 44.9
arahy.Tifrunner.gnm1.ann1.J3K1ST Arachis hypogaea HOM05D000520 ORTHO05D000399 7.1e-30 135.6 416 44.7
Phvul.006G153400 Phaseolus vulgaris HOM05D000520 ORTHO05D000399 1.9e-27 127.5 394 40.4
Ca_00641_v3 Cicer arietinum L. HOM05D000520 ORTHO05D000399 1.6e-26 124.4 392 40.6
Psat1g183400 Pisum sativum HOM05D000520 ORTHO05D000399 2.8e-26 123.6 399 40.6
Cfa015585 Carpinus fangiana HOM05D000520 ORTHO05D000399 1.6e-21 107.8 385 35.8
Nn1g02168 Nelumbo nucifera HOM05D000520 ORTHO05D000399 1.7e-20 104.4 313 44.1
Lalb_Chr15g0087371 Lupinus albus HOM05D000520 ORTHO05D000399 1.1e-19 101.7 341 36.7
Haze_00959 Corylus avellana HOM05D000520 ORTHO05D000399 1.9e-19 100.9 382 35.3
VMungo0540G0465 Vigna mungo HOM05D000520 ORTHO05D000399 4.3e-19 99.8 391 37.3
Prupe.1G151700 Prunus persica HOM05D000520 ORTHO05D000399 2.8e-18 97.1 349 39.5
Psat4g031280 Pisum sativum HOM05D000520 ORTHO05D000399 6.2e-18 95.9 422 41.9
TAR633G0222 Trochodendron aralioides HOM05D002055 ORTHO05D002120 6.2e-18 95.9 386 36.8
Manes.09G164500 Manihot esculenta HOM05D000520 ORTHO05D000399 8.1e-18 95.5 104 54.8
Dinv40265 Davidia involucrata HOM05D000520 ORTHO05D000399 1.4e-17 94.7 121 47.9
Manes.15G023400 Manihot esculenta HOM05D000520 ORTHO05D000399 4.0e-17 93.2 370 41.1
Duzib212G0287 Durio zibethinus HOM05D000520 ORTHO05D000399 5.3e-17 92.8 401 36.4
Phvul.003G092500 Phaseolus vulgaris HOM05D000520 ORTHO05D000399 6.9e-17 92.4 367 34.6
Potri.005G036300 Populus trichocarpa HOM05D000520 ORTHO05D000399 5.8e-16 89.4 106 52.8
Sed0010325 Sechium edule HOM05D000520 ORTHO05D000399 5.8e-16 89.4 114 51.8
Sed0025184 Sechium edule HOM05D000520 ORTHO05D000399 7.6e-16 89.0 114 54.4
ClCG03G016850 Citrullus lanatus HOM05D000520 ORTHO05D000399 9.9e-16 88.6 116 53.4
FAN22G0660 Fragaria x ananassa HOM05D000520 ORTHO05D000399 9.9e-16 88.6 163 42.9
Aqoxy2G03274 Aquilegia oxysepala HOM05D000520 ORTHO05D000399 1.7e-15 87.8 156 45.5
Glyma.15G104400 Glycine max HOM05D000520 ORTHO05D000399 1.7e-15 87.8 370 38.6
Oeu060380.1 Olea europaea HOM05D000520 ORTHO05D000399 2.9e-15 87.0 114 50.9
Gorai.006G054000 Gossypium raimondii HOM05D000520 ORTHO05D000399 4.9e-15 86.3 387 37.7
Sabra13G0026500 Salix brachista HOM05D000520 ORTHO05D000399 4.9e-15 86.3 112 51.8
TAR362G0969 Trochodendron aralioides HOM05D000520 ORTHO05D000399 4.9e-15 86.3 424 36.1
FvH4_4g14520 Fragaria vesca HOM05D000520 ORTHO05D000399 8.4e-15 85.5 164 42.7
FAN12G0085 Fragaria x ananassa HOM05D000520 ORTHO05D000399 8.4e-15 85.5 164 42.7
Manes.03G184400 Manihot esculenta HOM05D000520 ORTHO05D000399 8.4e-15 85.5 384 38.8
Thecc.05G306700 Theobroma cacao HOM05D000520 ORTHO05D000399 8.4e-15 85.5 110 50.0
MD16G1184300 Malus domestica HOM05D000520 ORTHO05D000399 1.1e-14 85.1 158 41.8
Duzib151G0073 Durio zibethinus HOM05D000520 ORTHO05D000399 1.4e-14 84.7 372 39.2
Glyma.13G208400 Glycine max HOM05D000520 ORTHO05D000399 1.4e-14 84.7 376 39.4
Sabra08G0158700 Salix brachista HOM05D000520 ORTHO05D000399 1.4e-14 84.7 401 37.9
CsaV3_1G039090 Cucumis sativus L. HOM05D000520 ORTHO05D000399 1.9e-14 84.3 115 50.4
Actinidia40190 Actinidia chinensis HOM05D000520 ORTHO05D000399 2.4e-14 84.0 351 37.9
arahy.Tifrunner.gnm1.ann1.S51AWQ Arachis hypogaea HOM05D000520 ORTHO05D000399 2.4e-14 84.0 341 37.0
CiPaw.07G015400 Carya illinoinensis HOM05D000520 ORTHO05D000399 3.2e-14 83.6 107 49.5
Glyma.17G016800 Glycine max HOM05D000520 ORTHO05D000399 3.2e-14 83.6 156 41.0
EL10Ac3g06363 Beta vulgaris HOM05D000520 ORTHO05D000399 5.4e-14 82.8 138 44.9
FAN07G0772 Fragaria x ananassa HOM05D000520 ORTHO05D000399 5.4e-14 82.8 164 41.5
Oeu042784.1 Olea europaea HOM05D000520 ORTHO05D000399 9.3e-14 82.0 406 36.7
Duzib106G1970 Durio zibethinus HOM05D000520 ORTHO05D000399 1.2e-13 81.6 132 45.5
Duzib128G1162 Durio zibethinus HOM05D000520 ORTHO05D000399 1.2e-13 81.6 112 51.8
Hund12193 Selenicereus undatus HOM05D000520 ORTHO05D000399 1.2e-13 81.6 86 58.1
DCAR_027154 Daucus carota HOM05D000520 ORTHO05D000399 1.6e-13 81.3 109 50.5
Carub.0003s0556 Capsella rubella HOM05D000520 ORTHO05D000399 2.1e-13 80.9 162 42.0
Lj3C779T2 Lonicera japonica HOM05D000520 ORTHO05D000399 2.1e-13 80.9 174 41.4
Manes.08G122800 Manihot esculenta HOM05D000520 ORTHO05D000399 2.7e-13 80.5 181 39.8
Atru.chr13.1890 Acer truncatum HOM05D000520 ORTHO05D000399 3.5e-13 80.1 189 37.0
Dinv44482 Davidia involucrata HOM05D000520 ORTHO05D000399 6.0e-13 79.3 121 47.1
Potri.013G025300 Populus trichocarpa HOM05D000520 ORTHO05D000399 6.0e-13 79.3 200 37.5
VMungo1215G0488 Vigna mungo HOM05D000520 ORTHO05D000399 1.3e-12 78.2 331 36.9
MSTRG.24755 Avicennia marina HOM05D000520 ORTHO05D000399 1.8e-12 77.8 363 40.8
Hma1.2p1_1037F.1_g250580 Hydrangea macrophylla HOM05D000520 ORTHO05D000399 1.8e-12 77.8 172 37.8
QL03p004617 Quercus lobata HOM05D000520 ORTHO05D000399 1.8e-12 77.8 106 51.9
AL3G16980 Arabidopsis lyrata HOM05D000520 ORTHO05D000399 2.3e-12 77.4 344 37.2
MSTRG.21833 Avicennia marina HOM05D000520 ORTHO05D000399 2.3e-12 77.4 81 55.6
CiPaw.02G092700 Carya illinoinensis HOM05D000520 ORTHO05D000399 2.3e-12 77.4 395 33.9
BcaC03g13633 Brassica carinata HOM05D000520 ORTHO05D000399 3.0e-12 77.0 156 40.4
C02p10270 Brassica napus HOM05D000520 ORTHO05D000399 3.0e-12 77.0 156 40.4
BolC2t06934H Brassica oleracea HOM05D000520 ORTHO05D000399 3.0e-12 77.0 156 40.4
TAR365G1251 Trochodendron aralioides HOM05D000520 ORTHO05D000399 3.0e-12 77.0 123 44.7
FAN17G1094 Fragaria x ananassa HOM05D000520 ORTHO05D000399 6.7e-12 75.9 423 34.8
arahy.Tifrunner.gnm1.ann1.K1C9AI Arachis hypogaea HOM05D000520 ORTHO05D000399 8.7e-12 75.5 343 39.9
CARHR193900 Cardamine hirsuta HOM05D000520 ORTHO05D000399 1.1e-11 75.1 130 42.3
Gohir.D09G053480 Gossypium hirsutum HOM05D000520 ORTHO05D000399 1.1e-11 75.1 389 36.2
Sed0003129 Sechium edule HOM05D000520 ORTHO05D000399 1.5e-11 74.7 134 45.5
BraA02t05479Z Brassica rapa HOM05D000520 ORTHO05D000399 2.5e-11 73.9 159 40.3
COL.COLO4_13507 Corchorus olitorius HOM05D000416 ORTHO05D000322 2.5e-11 73.9 108 48.1
A02p05190 Brassica napus HOM05D000520 ORTHO05D000399 3.3e-11 73.6 160 40.0
COL.COLO4_21650 Corchorus olitorius HOM05D000520 ORTHO05D000399 5.6e-11 72.8 378 37.0
Hma1.2p1_1362F.1_g278200 Hydrangea macrophylla HOM05D000520 ORTHO05D000399 5.6e-11 72.8 121 42.1
Ciclev10004709m.g Citrus clementina HOM05D000520 ORTHO05D000399 9.6e-11 72.0 410 34.1
Glyma.07G257300 Glycine max HOM05D000520 ORTHO05D000399 9.6e-11 72.0 344 38.4
BcaC01g04326 Brassica carinata HOM05D000520 ORTHO05D000399 1.3e-10 71.6 122 42.6
BolC3t16481H Brassica oleracea HOM05D000520 ORTHO05D000399 1.3e-10 71.6 122 42.6
Oeu030984.1 Olea europaea HOM05D000520 ORTHO05D000399 1.3e-10 71.6 191 36.6
AT5G19090 Arabidopsis thaliana HOM05D000520 ORTHO05D000399 1.6e-10 71.2 169 37.3
Actinidia23612 Actinidia chinensis HOM05D000520 ORTHO05D000399 2.1e-10 70.9 121 40.5
BcaC04g18611 Brassica carinata HOM05D000520 ORTHO05D000399 2.8e-10 70.5 80 50.0
C09p57300 Brassica napus HOM05D000520 ORTHO05D000399 2.8e-10 70.5 80 50.0
BolC9t58600H Brassica oleracea HOM05D000520 ORTHO05D000399 2.8e-10 70.5 80 50.0
Dinv38396 Davidia involucrata HOM05D000520 ORTHO05D000399 2.8e-10 70.5 345 38.3
TWI73G0943 Tripterygium wilfordii HOM05D000520 ORTHO05D000399 2.8e-10 70.5 164 40.9
CDE12G0659 Ceratophyllum demersum HOM05D000520 ORTHO05D000399 3.7e-10 70.1 112 47.3
RcHm_v2.0_Chr4g0418311 Rosa chinensis HOM05D000520 ORTHO05D000399 3.7e-10 70.1 109 45.9
Sp6g25290 Schrenkiella parvula HOM05D000520 ORTHO05D000399 3.7e-10 70.1 97 46.4
MSTRG.10015 Avicennia marina HOM05D000520 ORTHO05D000399 4.8e-10 69.7 408 38.2
Cpa.g.sc48.23 Carica papaya HOM05D000520 ORTHO05D000399 4.8e-10 69.7 112 41.1
Carub.0006s1741 Capsella rubella HOM05D000520 ORTHO05D000399 8.1e-10 68.9 95 46.3
PGR004G1850 Punica granatum HOM05D000520 ORTHO05D000399 8.1e-10 68.9 160 40.0
QL03p004799 Quercus lobata HOM05D002900 ORTHO05D003238 8.1e-10 68.9 102 50.0
CANSAT78G1556 Cannabis sativa HOM05D000520 ORTHO05D000399 1.1e-09 68.6 90 45.6
TAR636G3323 Trochodendron aralioides HOM05D000520 ORTHO05D000399 1.1e-09 68.6 331 36.9
vmacro08281 Vaccinium macrocarpon HOM05D000520 ORTHO05D000399 1.1e-09 68.6 143 41.3
Hund07053 Selenicereus undatus HOM05D000520 ORTHO05D000399 1.4e-09 68.2 133 39.8
Cpa.g.sc16.22 Carica papaya HOM05D000520 ORTHO05D000399 1.8e-09 67.8 138 40.6
BolC5t34771H Brassica oleracea HOM05D000520 ORTHO05D000399 2.4e-09 67.4 368 38.0
ECA247G2183 Erigeron canadensis HOM05D002957 ORTHO05D007941 2.4e-09 67.4 97 47.4
Thhalv10013101m.g Eutrema salsugineum HOM05D000520 ORTHO05D000399 2.4e-09 67.4 162 35.8
A10p20600 Brassica napus HOM05D000520 ORTHO05D000399 3.1e-09 67.0 141 36.9
BraA10t44122Z Brassica rapa HOM05D000520 ORTHO05D000399 3.1e-09 67.0 141 36.9
THA.LOC104802746 Tarenaya hassleriana HOM05D000520 ORTHO05D000399 3.1e-09 67.0 129 40.3
unitig_748.g8346 Utricularia gibba HOM05D000520 ORTHO05D000399 3.1e-09 67.0 160 43.1
AL6G30480 Arabidopsis lyrata HOM05D000520 ORTHO05D000399 4.0e-09 66.6 99 43.4
Lj9P684T19 Lonicera japonica HOM05D000520 ORTHO05D000399 4.0e-09 66.6 103 48.5
TWI56G1360 Tripterygium wilfordii HOM05D000520 ORTHO05D000399 4.0e-09 66.6 115 46.1
Ciclev10000747m.g Citrus clementina HOM05D000520 ORTHO05D000399 5.3e-09 66.2 104 48.1
Eucgr.H03592 Eucalyptus grandis HOM05D000520 ORTHO05D000399 6.9e-09 65.9 374 36.1
Ah.06g189150 Amaranthus hybridus HOM05D000520 ORTHO05D000399 1.2e-08 65.1 81 50.6
CSS0050336 Camellia sinensis var. sinensis HOM05D000520 ORTHO05D000399 1.2e-08 65.1 297 32.0
CsaV3_6G018600 Cucumis sativus L. HOM05D000520 ORTHO05D000399 1.2e-08 65.1 132 40.9
SGA_v2.0_scaffold237G43821 Striga asiatica HOM05D000520 ORTHO05D000399 1.2e-08 65.1 89 47.2
Actinidia00088 Actinidia chinensis HOM05D000520 ORTHO05D000399 1.5e-08 64.7 346 39.9
Aa31LG11G10640 Aethionema arabicum HOM05D000520 ORTHO05D000399 1.5e-08 64.7 78 50.0
BraA03t12630Z Brassica rapa HOM05D000520 ORTHO05D000399 1.5e-08 64.7 97 42.3
Lsat_1_v5_gn_7_68501 Lactuca sativa HOM05D000520 ORTHO05D000399 2.6e-08 63.9 55 58.2
Sabra05G0036800 Salix brachista HOM05D000520 ORTHO05D000399 3.4e-08 63.5 51 62.7
THA.LOC104822309 Tarenaya hassleriana HOM05D000520 ORTHO05D000399 4.5e-08 63.2 110 40.9
PGR006G0001 Punica granatum HOM05D000520 ORTHO05D000399 5.8e-08 62.8 351 29.9
Rhsim04G0206800 Rhododendron simsii HOM05D000520 ORTHO05D000399 5.8e-08 62.8 154 39.0
DCAR_024583 Daucus carota HOM05D000520 ORTHO05D000399 7.6e-08 62.4 93 44.1
Migut.G00268 Erythranthe guttata HOM05D000520 ORTHO05D000399 7.6e-08 62.4 57 61.4
AT3G06130 Arabidopsis thaliana HOM05D000520 ORTHO05D000399 9.9e-08 62.0 357 38.4
ECA240G2947 Erigeron canadensis HOM05D000520 ORTHO05D000399 9.9e-08 62.0 112 45.5
CSS0042599 Camellia sinensis var. sinensis HOM05D000520 ORTHO05D000399 1.3e-07 61.6 325 29.2
C03p42000 Brassica napus HOM05D000520 ORTHO05D000399 1.7e-07 61.2 379 32.2
AUR62038213 Chenopodium quinoa HOM05D000520 ORTHO05D000399 1.7e-07 61.2 172 34.3
Eucgr.H03576 Eucalyptus grandis HOM05D000520 ORTHO05D000399 1.7e-07 61.2 137 37.2
BcaB08g36614 Brassica carinata HOM05D000520 ORTHO05D000399 2.2e-07 60.8 112 38.4
THA.LOC104821878 Tarenaya hassleriana HOM05D000520 ORTHO05D012153 2.2e-07 60.8 47 61.7
Aa31LG5G16650 Aethionema arabicum HOM05D000520 ORTHO05D000399 2.9e-07 60.5 138 39.1
Gohir.A11G263600 Gossypium hirsutum HOM05D000520 ORTHO05D000399 2.9e-07 60.5 137 40.9
PSO170G1749 Papaver somniferum HOM05D000520 ORTHO05D000399 2.9e-07 60.5 151 36.4
ClCG06G005820 Citrullus lanatus HOM05D000520 ORTHO05D000399 3.8e-07 60.1 139 37.4
Hma1.2p1_0511F.1_g169070 Hydrangea macrophylla HOM05D000520 ORTHO05D000399 3.8e-07 60.1 53 58.5
PGR031G0428 Punica granatum HOM05D000520 ORTHO05D000399 3.8e-07 60.1 93 43.0
CDE11G0193 Ceratophyllum demersum HOM05D000520 ORTHO05D000399 4.9e-07 59.7 335 29.9
AUR62005083 Chenopodium quinoa HOM05D000520 ORTHO05D000399 6.4e-07 59.3 81 50.6
HanXRQChr12g0359381 Helianthus annuus HOM05D000520 ORTHO05D000399 6.4e-07 59.3 57 52.6
A03p34530 Brassica napus HOM05D000520 ORTHO05D000399 8.4e-07 58.9 382 32.2
Lalb_Chr12g0196211 Lupinus albus HOM05D000520 ORTHO05D000399 1.1e-06 58.5 179 39.7
MBI17_g34453_MAGBIO Magnolia biondii HOM05D000520 ORTHO05D000399 1.1e-06 58.5 152 36.8
TWI09G0069 Tripterygium wilfordii HOM05D000520 ORTHO05D000399 1.1e-06 58.5 139 37.4
Duzib177G0455 Durio zibethinus HOM05D000520 ORTHO05D000399 1.4e-06 58.2 111 42.3
QL06p004190 Quercus lobata HOM05D000520 ORTHO05D000399 1.4e-06 58.2 170 34.1
SGA_v2.0_scaffold39G15363 Striga asiatica HOM05D000520 ORTHO05D000399 1.4e-06 58.2 126 40.5
A05p41870 Brassica napus HOM05D000520 ORTHO05D000399 1.9e-06 57.8 364 35.2
Gohir.A09G054400 Gossypium hirsutum HOM05D000520 ORTHO05D000399 1.9e-06 57.8 394 33.8
SalBow5G3417 Salvia bowleyana HOM05D000520 ORTHO05D000399 1.9e-06 57.8 137 37.2
vmacro15303 Vaccinium macrocarpon HOM05D000520 ORTHO05D000399 2.5e-06 57.4 53 58.5
Actinidia08516 Actinidia chinensis HOM05D000520 ORTHO05D000399 3.2e-06 57.0 53 56.6
C05p61130 Brassica napus HOM05D000520 ORTHO05D000399 3.2e-06 57.0 357 38.1
DCAR_002413 Daucus carota HOM05D000520 ORTHO05D000399 3.2e-06 57.0 117 38.5
CSS0016617 Camellia sinensis var. sinensis HOM05D000520 ORTHO05D000399 4.2e-06 56.6 141 36.9
CANSAT54G1951 Cannabis sativa HOM05D000520 ORTHO05D000399 4.2e-06 56.6 136 36.0
Lsat_1_v5_gn_5_76560 Lactuca sativa HOM05D000520 ORTHO05D000399 4.2e-06 56.6 202 32.7
SalBow5G3772 Salvia bowleyana HOM05D000520 ORTHO05D000399 4.2e-06 56.6 122 38.5
Atru.chr2.464 Acer truncatum HOM05D000520 ORTHO05D000399 5.5e-06 56.2 102 41.2
Aa31LG5G15600 Aethionema arabicum HOM05D000520 ORTHO05D012153 7.1e-06 55.8 53 52.8
ClCG05G005420 Citrullus lanatus HOM05D000520 ORTHO05D000399 7.1e-06 55.8 128 39.1
Haze_04227 Corylus avellana HOM05D000520 ORTHO05D000399 7.1e-06 55.8 135 40.0
Thhalv10020810m.g Eutrema salsugineum HOM05D000520 ORTHO05D000399 7.1e-06 55.8 349 32.1
TWI12G0073 Tripterygium wilfordii HOM05D000520 ORTHO05D000399 7.1e-06 55.8 118 44.1
ECA234G3541 Erigeron canadensis HOM05D000520 ORTHO05D000399 9.3e-06 55.5 129 34.9
HanXRQChr10g0310421 Helianthus annuus HOM05D000520 ORTHO05D000399 9.3e-06 55.5 137 35.0
Hma1.2p1_0081F.1_g042480 Hydrangea macrophylla HOM05D000520 ORTHO05D000399 9.3e-06 55.5 168 36.9
Oeu037683.1 Olea europaea HOM05D000520 ORTHO05D000399 9.3e-06 55.5 110 40.0


User provided reference genes

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