Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G3136 Trifolium pratense HOM05D005830 ORTHO05D007212 3.2e-204 714.9 381 100.0
Medtr3g106630 Medicago truncatula HOM05D005830 ORTHO05D007212 2.1e-171 605.9 385 84.7
Ca_15753_v3 Cicer arietinum L. HOM05D005830 ORTHO05D007212 1.2e-158 563.5 381 79.0
Psat5g029840 Pisum sativum HOM05D005830 ORTHO05D007212 5.6e-156 554.7 381 79.3
Lj1g0023135 Lotus japonicus HOM05D005830 ORTHO05D007212 1.4e-127 460.3 385 66.8
Lalb_Chr11g0063651 Lupinus albus HOM05D005830 ORTHO05D007212 6.5e-120 434.9 382 65.2
Glyma.04G065400 Glycine max HOM05D005830 ORTHO05D007212 2.1e-118 429.9 382 63.6
VMungo1309G0557 Vigna mungo HOM05D005830 ORTHO05D007212 2.2e-115 419.9 383 63.2
Phvul.009G091500 Phaseolus vulgaris HOM05D005830 ORTHO05D007212 2.6e-113 412.9 383 61.1
QL02p021141 Quercus lobata HOM05D005830 ORTHO05D007212 2.4e-90 336.7 401 48.6
Ciclev10010445m.g Citrus clementina HOM05D005830 ORTHO05D007212 5.3e-90 335.5 392 50.0
CiPaw.08G009900 Carya illinoinensis HOM05D005830 ORTHO05D007212 1.6e-89 334.0 386 51.3
COL.COLO4_18887 Corchorus olitorius HOM05D005830 ORTHO05D007212 1.0e-88 331.3 381 49.1
TAR625G0228 Trochodendron aralioides HOM05D005830 ORTHO05D007212 1.1e-87 327.8 401 49.4
TWI63G1326 Tripterygium wilfordii HOM05D005830 ORTHO05D007212 1.5e-87 327.4 382 50.8
Gorai.009G059500 Gossypium raimondii HOM05D005830 ORTHO05D007212 9.4e-87 324.7 396 49.7
Cfa013122 Carpinus fangiana HOM05D005830 ORTHO05D007212 1.2e-86 324.3 385 49.6
Gohir.D05G058400 Gossypium hirsutum HOM05D005830 ORTHO05D007212 1.2e-86 324.3 396 49.7
Manes.06G045500 Manihot esculenta HOM05D005830 ORTHO05D007212 1.2e-86 324.3 402 48.3
TAR636G3280 Trochodendron aralioides HOM05D005830 ORTHO05D007212 1.6e-86 323.9 401 47.6
Prupe.1G483400 Prunus persica HOM05D005830 ORTHO05D007212 3.6e-86 322.8 382 50.0
CiPaw.03G250100 Carya illinoinensis HOM05D005830 ORTHO05D007212 5.2e-85 318.9 397 49.1
CiPaw.07G225200 Carya illinoinensis HOM05D005830 ORTHO05D007212 8.8e-85 318.2 388 48.7
RcHm_v2.0_Chr6g0297551 Rosa chinensis HOM05D005830 ORTHO05D007212 2.6e-84 316.6 379 50.1
ClCG06G011670 Citrullus lanatus HOM05D005830 ORTHO05D007212 8.3e-83 311.6 401 47.1
Thecc.09G021700 Theobroma cacao HOM05D005830 ORTHO05D007212 8.3e-83 311.6 396 48.0
Ah.09g224370 Amaranthus hybridus HOM05D005830 ORTHO05D007212 1.1e-82 311.2 400 45.2
CsaV3_1G027980 Cucumis sativus L. HOM05D005830 ORTHO05D007212 1.1e-82 311.2 397 47.4
CiPaw.04G176400 Carya illinoinensis HOM05D005830 ORTHO05D007212 2.4e-82 310.1 396 49.0
Lj9A701G52 Lonicera japonica HOM05D005830 ORTHO05D007212 5.4e-82 308.9 390 47.4
GSVIVG01012831001 Vitis vinifera HOM05D005830 ORTHO05D007212 7.0e-82 308.5 382 49.0
FvH4_2g28800 Fragaria vesca HOM05D005830 ORTHO05D007212 2.7e-81 306.6 383 47.5
MD15G1128100 Malus domestica HOM05D005830 ORTHO05D007212 2.7e-81 306.6 380 47.6
MELO3C010295.2 Cucumis melo HOM05D005830 ORTHO05D007212 7.7e-81 305.1 398 46.5
Duzib150G0784 Durio zibethinus HOM05D005830 ORTHO05D007212 7.7e-81 305.1 394 47.2
MD02G1021100 Malus domestica HOM05D005830 ORTHO05D007212 7.7e-81 305.1 383 50.1
FAN24G0474 Fragaria x ananassa HOM05D005830 ORTHO05D007212 1.0e-80 304.7 383 47.3
Potri.018G123400 Populus trichocarpa HOM05D005830 ORTHO05D007212 1.0e-80 304.7 391 48.1
Prupe.7G250400 Prunus persica HOM05D005830 ORTHO05D007212 1.0e-80 304.7 398 48.0
Aqoxy7G03615 Aquilegia oxysepala HOM05D005830 ORTHO05D007212 1.7e-80 303.9 399 47.4
QL02p090253 Quercus lobata HOM05D005830 ORTHO05D007212 1.7e-80 303.9 406 46.1
Atru.chr7.1975 Acer truncatum HOM05D005830 ORTHO05D007212 2.3e-80 303.5 409 45.5
Dinv36464 Davidia involucrata HOM05D005830 ORTHO05D007212 2.3e-80 303.5 393 46.8
Sc08g0006200 Simmondsia chinensis HOM05D005830 ORTHO05D007212 2.9e-80 303.1 392 46.9
Hma1.2p1_0497F.1_g166530 Hydrangea macrophylla HOM05D005830 ORTHO05D007212 3.8e-80 302.8 417 45.1
FAN27G1157 Fragaria x ananassa HOM05D005830 ORTHO05D007212 5.0e-80 302.4 379 46.4
FAN15G2262 Fragaria x ananassa HOM05D005830 ORTHO05D007212 1.1e-79 301.2 383 47.0
Ciclev10008496m.g Citrus clementina HOM05D005830 ORTHO05D007212 1.5e-79 300.8 408 46.1
FAN20G1042 Fragaria x ananassa HOM05D005830 ORTHO05D007212 1.5e-79 300.8 383 46.7
Cfa002293 Carpinus fangiana HOM05D005830 ORTHO05D007212 1.9e-79 300.4 411 47.0
Sabra06G0201100 Salix brachista HOM05D005830 ORTHO05D007212 1.9e-79 300.4 396 46.0
Sabra18G0105100 Salix brachista HOM05D005830 ORTHO05D007212 1.9e-79 300.4 391 47.1
Sed0009357 Sechium edule HOM05D005830 ORTHO05D007212 1.9e-79 300.4 384 46.9
Manes.14G117500 Manihot esculenta HOM05D005830 ORTHO05D007212 2.5e-79 300.1 392 45.4
Haze_25480 Corylus avellana HOM05D005830 ORTHO05D007212 4.2e-79 299.3 411 46.7
Nn2g12145 Nelumbo nucifera HOM05D005830 ORTHO05D007212 7.2e-79 298.5 398 46.0
AUR62013287 Chenopodium quinoa HOM05D005830 ORTHO05D007212 1.6e-78 297.4 407 45.2
vmacro06159 Vaccinium macrocarpon HOM05D005830 ORTHO05D007212 1.6e-78 297.4 399 45.4
Potri.006G063600 Populus trichocarpa HOM05D005830 ORTHO05D007212 2.8e-78 296.6 393 46.1
MD15G1164200 Malus domestica HOM05D005830 ORTHO05D007212 3.6e-78 296.2 383 49.1
Potri.006G256900 Populus trichocarpa HOM05D005830 ORTHO05D007212 4.7e-78 295.8 389 46.8
Eucgr.C00582 Eucalyptus grandis HOM05D005830 ORTHO05D007212 6.1e-78 295.4 398 45.7
Gorai.009G015000 Gossypium raimondii HOM05D005830 ORTHO05D007212 6.1e-78 295.4 389 45.0
EL10Ac8g18756 Beta vulgaris HOM05D005830 ORTHO05D007212 8.0e-78 295.0 400 45.0
Gohir.D05G014900 Gossypium hirsutum HOM05D005830 ORTHO05D007212 1.4e-77 294.3 389 45.2
Nn8g39584 Nelumbo nucifera HOM05D005830 ORTHO05D007212 1.4e-77 294.3 387 46.3
Lsat_1_v5_gn_5_93541 Lactuca sativa HOM05D005830 ORTHO05D007212 4.0e-77 292.7 389 45.5
CANSAT11G0221 Cannabis sativa HOM05D005830 ORTHO05D007212 5.2e-77 292.4 408 49.0
Eucgr.C02754 Eucalyptus grandis HOM05D005830 ORTHO05D007212 5.2e-77 292.4 382 46.3
Rhsim07G0159800 Rhododendron simsii HOM05D005830 ORTHO05D007212 6.8e-77 292.0 388 45.4
Sabra06G0046300 Salix brachista HOM05D005830 ORTHO05D007212 1.5e-76 290.8 393 46.6
VMungo1215G0722 Vigna mungo HOM05D005830 ORTHO05D007212 3.4e-76 289.7 372 46.0
Manes.16G124200 Manihot esculenta HOM05D002641 ORTHO05D001537 5.7e-76 288.9 390 45.1
RcHm_v2.0_Chr2g0087391 Rosa chinensis HOM05D005830 ORTHO05D007212 5.7e-76 288.9 388 47.2
Cpa.g.sc46.60 Carica papaya HOM05D005830 ORTHO05D007212 7.5e-76 288.5 400 44.5
MBI14_g38128_MAGBIO Magnolia biondii HOM05D005830 ORTHO05D007212 9.8e-76 288.1 399 43.6
FAN28G1643 Fragaria x ananassa HOM05D005830 ORTHO05D007212 1.7e-75 287.3 397 45.3
Dinv41459 Davidia involucrata HOM05D005830 ORTHO05D007212 2.2e-75 287.0 383 46.7
Gohir.A05G013800 Gossypium hirsutum HOM05D005830 ORTHO05D007212 2.8e-75 286.6 382 45.0
Nitab4.5_0002267g0050 Nicotiana tabacum HOM05D005830 ORTHO05D007212 3.7e-75 286.2 411 43.1
FAN23G1789 Fragaria x ananassa HOM05D005830 ORTHO05D007212 4.9e-75 285.8 397 45.3
FvH4_1g02430 Fragaria vesca HOM05D005830 ORTHO05D007212 6.3e-75 285.4 397 45.3
FAN19G1317 Fragaria x ananassa HOM05D005830 ORTHO05D007212 6.3e-75 285.4 397 45.3
Nitab4.5_0000704g0010 Nicotiana tabacum HOM05D005830 ORTHO05D007212 5.4e-74 282.3 402 44.3
arahy.Tifrunner.gnm1.ann1.N1L3G9 Arachis hypogaea HOM05D005830 ORTHO05D007212 9.2e-74 281.6 404 43.3
HanXRQChr12g0356861 Helianthus annuus HOM05D005830 ORTHO05D007212 1.6e-73 280.8 383 45.4
vmacro05164 Vaccinium macrocarpon HOM05D005830 ORTHO05D007212 2.0e-73 280.4 387 43.9
Dinv05006 Davidia involucrata HOM05D005830 ORTHO05D007212 7.8e-73 278.5 397 43.8
Peaxi162Scf00088g00106 Petunia axillaris HOM05D005830 ORTHO05D007212 3.9e-72 276.2 414 44.2
Phvul.003G170800 Phaseolus vulgaris HOM05D005830 ORTHO05D007212 6.6e-72 275.4 371 44.5
Thecc.09G135000 Theobroma cacao HOM05D005830 ORTHO05D007212 1.5e-71 274.2 396 43.7
Lalb_Chr13g0301421 Lupinus albus HOM05D005830 ORTHO05D007212 5.6e-71 272.3 393 43.3
Glyma.17G109300 Glycine max HOM05D005830 ORTHO05D007212 6.1e-70 268.9 382 44.5
COL.COLO4_15558 Corchorus olitorius HOM05D005830 ORTHO05D007212 1.8e-69 267.3 396 42.2
Ca_21656_v3 Cicer arietinum L. HOM05D005830 ORTHO05D007212 3.1e-69 266.5 379 44.9
DCAR_020892 Daucus carota HOM05D005830 ORTHO05D007212 6.8e-69 265.4 380 44.7
HanXRQChr10g0314411 Helianthus annuus HOM05D005830 ORTHO05D007212 2.9e-67 260.0 391 43.0
TPR.G956 Trifolium pratense HOM05D005830 ORTHO05D007212 4.9e-67 259.2 372 43.8
Lj4g0000922 Lotus japonicus HOM05D005830 ORTHO05D007212 7.0e-66 255.4 372 43.8
CAN.G1382.7 Capsicum annuum HOM05D005830 ORTHO05D007212 2.3e-64 250.4 452 37.8
Medtr4g115690 Medicago truncatula HOM05D005830 ORTHO05D007212 3.0e-64 250.0 330 44.8
Psat4g036280 Pisum sativum HOM05D005830 ORTHO05D007212 3.0e-64 250.0 373 42.6
Oeu052743.1 Olea europaea HOM05D005830 ORTHO05D007212 3.9e-64 249.6 379 42.2
PGR142G1093 Punica granatum HOM05D005830 ORTHO05D007212 1.1e-63 248.1 376 41.2
Sopen07g003650 Solanum pennellii HOM05D005830 ORTHO05D007212 1.9e-63 247.3 370 43.0
Actinidia14593 Actinidia chinensis HOM05D000485 ORTHO05D000341 2.5e-63 246.9 304 46.7
Sc06g0000560 Simmondsia chinensis HOM05D005830 ORTHO05D007212 9.5e-63 245.0 391 39.9
Solyc07g007660.1 Solanum lycopersicum HOM05D005830 ORTHO05D007212 2.1e-62 243.8 370 42.4
Cc06_g07840 Coffea canephora HOM05D005830 ORTHO05D007212 2.8e-62 243.4 413 40.2
PGSC0003DMG400030680 Solanum tuberosum HOM05D005830 ORTHO05D007212 8.0e-62 241.9 380 43.4
ATR0800G042 Amborella trichopoda HOM05D005830 ORTHO05D007212 3.4e-60 236.5 382 42.1
Oeu056965.1 Olea europaea HOM05D005830 ORTHO05D007212 4.4e-60 236.1 346 43.6
Aqoxy4G01850 Aquilegia oxysepala HOM05D005830 ORTHO05D007212 7.5e-60 235.3 290 48.6
MSTRG.10652 Avicennia marina HOM05D005830 ORTHO05D007212 2.9e-59 233.4 398 38.9
unitig_0.g2712 Utricularia gibba HOM05D005830 ORTHO05D007212 6.0e-57 225.7 352 40.3
Rhsim03G0252000 Rhododendron simsii HOM05D005830 ORTHO05D007212 1.5e-55 221.1 273 48.7
AUR62011200 Chenopodium quinoa HOM05D005830 ORTHO05D007212 4.3e-55 219.5 310 42.3
ECA234G3193 Erigeron canadensis HOM05D005830 ORTHO05D007212 6.2e-54 215.7 269 45.0
SalBow1G4219 Salvia bowleyana HOM05D005830 ORTHO05D007212 1.5e-52 211.1 351 39.6
EL10Ac2g04187 Beta vulgaris HOM05D005830 ORTHO05D007212 2.0e-52 210.7 287 44.3
Migut.K00413 Erythranthe guttata HOM05D005830 ORTHO05D007212 3.4e-52 209.9 385 38.7
Glyma.16G087650 Glycine max HOM05D005830 ORTHO05D007212 1.2e-49 201.4 163 67.5
Ah.16g104630 Amaranthus hybridus HOM05D000524 ORTHO05D000381 4.6e-49 199.5 282 41.5
AUR62012424 Chenopodium quinoa HOM05D005830 ORTHO05D007212 5.2e-45 186.0 400 34.2
HPP92_010549 Vanilla planifolia HOM05D005830 ORTHO05D007212 1.3e-40 171.4 365 35.9
Actinidia26367 Actinidia chinensis HOM05D005830 ORTHO05D007212 6.9e-37 159.1 377 34.7
arahy.Tifrunner.gnm1.ann1.TZG1XT Arachis hypogaea HOM05D000451 ORTHO05D000351 1.5e-36 157.9 317 33.8
AUR62031547 Chenopodium quinoa HOM05D005830 ORTHO05D007212 1.1e-31 141.7 237 37.1
Haze_21491 Corylus avellana HOM05D005830 ORTHO05D007212 2.5e-31 140.6 157 50.3
Glyma.06G066550 Glycine max HOM05D005830 ORTHO05D007212 1.3e-30 138.3 117 65.8
SEGI_15152 Sequoiadendron giganteum HOM05D005830 ORTHO05D007212 1.3e-27 128.3 459 27.5
HPP92_027271 Vanilla planifolia HOM05D005830 ORTHO05D007212 5.4e-26 122.9 161 42.9
FAN26G3009 Fragaria x ananassa HOM05D005830 ORTHO05D007212 1.6e-25 121.3 168 46.4
Medtr4g014150 Medicago truncatula HOM05D005830 ORTHO05D007212 7.9e-25 119.0 257 33.5
QL08p064688 Quercus lobata HOM05D005830 ORTHO05D007212 1.3e-16 91.7 146 38.4
Lj7P437T13 Lonicera japonica HOM05D005830 ORTHO05D007212 3.9e-16 90.1 165 40.0
VMungo1309G2190 Vigna mungo HOM05D005830 ORTHO05D026219 1.2e-09 68.6 106 39.6
Glyma.01G070700 Glycine max HOM05D002723 ORTHO05D003240 2.3e-08 64.3 108 32.4


User provided reference genes

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