Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G23168 Trifolium pratense HOM05D000502 ORTHO05D000356 1.9e-66 255.8 132 100.0
TPR.G31278 Trifolium pratense HOM05D000502 ORTHO05D000356 1.9e-66 255.8 132 100.0
Medtr5g036080 Medicago truncatula HOM05D000502 ORTHO05D000356 9.6e-55 216.9 131 84.7
Lj2g0006574 Lotus japonicus HOM05D000502 ORTHO05D000356 1.0e-35 153.7 134 59.0
Phvul.002G076500 Phaseolus vulgaris HOM05D000502 ORTHO05D000356 4.6e-33 144.8 133 58.6
Glyma.02G027900 Glycine max HOM05D000502 ORTHO05D000356 1.0e-32 143.7 135 58.5
Psat2g113320 Pisum sativum HOM05D000502 ORTHO05D000356 1.7e-14 83.2 134 40.3
Lj2g0007154 Lotus japonicus HOM05D000502 ORTHO05D000356 4.8e-14 81.6 141 37.6
LjContig00170g0009972 Lotus japonicus HOM05D000502 ORTHO05D000356 4.8e-14 81.6 141 37.6
Lj2g0027894 Lotus japonicus HOM05D000502 ORTHO05D000356 1.4e-13 80.1 141 36.9
TPR.G19406 Trifolium pratense HOM05D000502 ORTHO05D000356 7.0e-13 77.8 131 36.6
Migut.L01389 Erythranthe guttata HOM05D000502 ORTHO05D000356 1.1e-10 70.5 125 37.6
Thhalv10023823m.g Eutrema salsugineum HOM05D000502 ORTHO05D000356 9.4e-10 67.4 73 42.5
FAN17G2703 Fragaria x ananassa HOM05D000502 ORTHO05D000356 9.4e-10 67.4 92 37.0
Dinv24913 Davidia involucrata HOM05D000502 ORTHO05D000356 1.2e-09 67.0 99 38.4
QL03p067186 Quercus lobata HOM05D000502 ORTHO05D000356 2.7e-09 65.9 118 34.7
TWI75G0054 Tripterygium wilfordii HOM05D000502 ORTHO05D000356 3.6e-09 65.5 124 36.3
TWI75G1323 Tripterygium wilfordii HOM05D000502 ORTHO05D000356 3.6e-09 65.5 124 36.3
TWI75G1727 Tripterygium wilfordii HOM05D000502 ORTHO05D000356 3.6e-09 65.5 124 36.3
TPR.G23162 Trifolium pratense HOM05D000502 ORTHO05D000356 4.7e-09 65.1 135 38.5
Prupe.1G261000 Prunus persica HOM05D000502 ORTHO05D000356 6.1e-09 64.7 116 36.2
Nitab4.5_0000882g0010 Nicotiana tabacum HOM05D000502 ORTHO05D000356 8.0e-09 64.3 123 37.4
Sed0012239 Sechium edule HOM05D000502 ORTHO05D000356 8.0e-09 64.3 72 44.4
Aa31LG10G6080 Aethionema arabicum HOM05D000502 ORTHO05D000356 1.0e-08 63.9 101 36.6
CiPaw.06G075900 Carya illinoinensis HOM05D000502 ORTHO05D000356 1.0e-08 63.9 121 34.7
Glyma.02G027800 Glycine max HOM05D000502 ORTHO05D000356 1.0e-08 63.9 77 39.0
CSS0032899 Camellia sinensis var. sinensis HOM05D000502 ORTHO05D000356 1.4e-08 63.5 128 32.8
FvH4_4g35180 Fragaria vesca HOM05D000502 ORTHO05D000356 1.4e-08 63.5 92 35.9
Medtr8g062770 Medicago truncatula HOM05D000502 ORTHO05D000356 1.4e-08 63.5 103 36.9
Peaxi162Scf00001g10525 Petunia axillaris HOM05D000502 ORTHO05D000356 1.4e-08 63.5 123 38.2
RcHm_v2.0_Chr4g0444791 Rosa chinensis HOM05D000502 ORTHO05D000356 1.4e-08 63.5 92 37.0
Lj2A218T57 Lonicera japonica HOM05D000502 ORTHO05D000356 1.8e-08 63.2 106 37.7
Manes.01G195600 Manihot esculenta HOM05D000502 ORTHO05D000356 1.8e-08 63.2 126 33.3
Psat4g128200 Pisum sativum HOM05D000502 ORTHO05D000356 1.8e-08 63.2 104 37.5
A09p17810 Brassica napus HOM05D000502 ORTHO05D000356 2.3e-08 62.8 73 43.8
HanXRQChr12g0384581 Helianthus annuus HOM05D000502 ORTHO05D000356 2.3e-08 62.8 107 34.6
BraA09t37414Z Brassica rapa HOM05D000502 ORTHO05D000356 3.0e-08 62.4 73 43.8
CANSAT01G0382 Cannabis sativa HOM05D000502 ORTHO05D000356 4.0e-08 62.0 123 39.0
Nitab4.5_0011364g0010 Nicotiana tabacum HOM05D000502 ORTHO05D000356 4.0e-08 62.0 122 35.2
Solyc10g018760.1 Solanum lycopersicum HOM05D000502 ORTHO05D000356 4.0e-08 62.0 122 36.9
CsaV3_5G025440 Cucumis sativus L. HOM05D000502 ORTHO05D000356 5.2e-08 61.6 90 43.3
unitig_22.g6478 Utricularia gibba HOM05D000502 ORTHO05D000356 5.2e-08 61.6 74 43.2
DCAR_026562 Daucus carota HOM05D000502 ORTHO05D000356 6.7e-08 61.2 122 35.2
Sabra12G0077000 Salix brachista HOM05D000502 ORTHO05D000356 6.7e-08 61.2 79 41.8
Aa31LG7G7900 Aethionema arabicum HOM05D000502 ORTHO05D000356 8.8e-08 60.8 122 35.2
BcaC04g22202 Brassica carinata HOM05D000502 ORTHO05D000356 8.8e-08 60.8 73 42.5
C09p22160 Brassica napus HOM05D000502 ORTHO05D000356 8.8e-08 60.8 73 42.5
BolC9t55131H Brassica oleracea HOM05D000502 ORTHO05D000356 8.8e-08 60.8 73 42.5
MELO3C002936.2 Cucumis melo HOM05D000502 ORTHO05D000356 8.8e-08 60.8 90 42.2
Nn3g17027 Nelumbo nucifera HOM05D000502 ORTHO05D000356 8.8e-08 60.8 129 33.3
TPR.G25894 Trifolium pratense HOM05D000502 ORTHO05D000356 8.8e-08 60.8 90 34.4
Atru.chr11.1945 Acer truncatum HOM05D000502 ORTHO05D000356 1.2e-07 60.5 119 36.1
BcaB07g31192 Brassica carinata HOM05D000502 ORTHO05D000356 1.2e-07 60.5 73 41.1
Rhsim12G0125800 Rhododendron simsii HOM05D000502 ORTHO05D000356 1.2e-07 60.5 119 35.3
Cpa.g.sc5.334 Carica papaya HOM05D000502 ORTHO05D000356 1.5e-07 60.1 104 35.6
Eucgr.B02562 Eucalyptus grandis HOM05D000502 ORTHO05D000356 1.5e-07 60.1 98 37.8
Potri.012G104600 Populus trichocarpa HOM05D000502 ORTHO05D000356 1.5e-07 60.1 130 33.8
THA.LOC104812775 Tarenaya hassleriana HOM05D000502 ORTHO05D000356 1.5e-07 60.1 81 35.8
Thhalv10007920m.g Eutrema salsugineum HOM05D000502 ORTHO05D000356 2.0e-07 59.7 91 37.4
Gohir.D05G321500 Gossypium hirsutum HOM05D000502 ORTHO05D000356 2.0e-07 59.7 88 37.5
ECA233G1318 Erigeron canadensis HOM05D000502 ORTHO05D000356 2.6e-07 59.3 79 40.5
Sabra15G0123700 Salix brachista HOM05D000502 ORTHO05D000356 2.6e-07 59.3 126 35.7
Solyc04g005040.1 Solanum lycopersicum HOM05D000502 ORTHO05D000356 2.6e-07 59.3 122 32.0
PGSC0003DMG400001924 Solanum tuberosum HOM05D000502 ORTHO05D000356 2.6e-07 59.3 122 32.8
Gorai.009G345000 Gossypium raimondii HOM05D000502 ORTHO05D000356 3.3e-07 58.9 88 37.5
SalBow2G0295 Salvia bowleyana HOM05D000502 ORTHO05D000356 3.3e-07 58.9 116 35.3
SalBow2G2082 Salvia bowleyana HOM05D000502 ORTHO05D000356 3.3e-07 58.9 116 35.3
Sed0017339 Sechium edule HOM05D000502 ORTHO05D000356 3.3e-07 58.9 90 40.0
TWI18G1226 Tripterygium wilfordii HOM05D000502 ORTHO05D000356 3.3e-07 58.9 127 33.9
GSVIVG01020151001 Vitis vinifera HOM05D000502 ORTHO05D000356 3.3e-07 58.9 79 38.0
Atru.chr11.1943 Acer truncatum HOM05D000502 ORTHO05D000356 4.4e-07 58.5 74 41.9
Aa31LG2G12790 Aethionema arabicum HOM05D000502 ORTHO05D000356 4.4e-07 58.5 83 37.3
ClCG09G018600 Citrullus lanatus HOM05D000502 ORTHO05D000356 4.4e-07 58.5 58 53.4
Ciclev10031870m.g Citrus clementina HOM05D000502 ORTHO05D000356 4.4e-07 58.5 78 39.7
Gohir.A05G319300 Gossypium hirsutum HOM05D000502 ORTHO05D000356 4.4e-07 58.5 88 37.5
Lsat_1_v5_gn_4_6101 Lactuca sativa HOM05D000502 ORTHO05D000356 4.4e-07 58.5 112 33.0
MBI15_g00961_MAGBIO Magnolia biondii HOM05D000502 ORTHO05D000356 4.4e-07 58.5 71 38.0
Nitab4.5_0000257g0040 Nicotiana tabacum HOM05D000502 ORTHO05D000356 4.4e-07 58.5 89 37.1
Potri.015G103900 Populus trichocarpa HOM05D000502 ORTHO05D000356 4.4e-07 58.5 76 39.5
SalBow5G3659 Salvia bowleyana HOM05D000502 ORTHO05D000356 4.4e-07 58.5 80 36.2
TPR.G17312 Trifolium pratense HOM05D000502 ORTHO05D000356 4.4e-07 58.5 62 46.8
Atru.chr11.1942 Acer truncatum HOM05D000502 ORTHO05D000356 5.7e-07 58.2 90 35.6
Atru.chr9.1303 Acer truncatum HOM05D000502 ORTHO05D000356 5.7e-07 58.2 118 31.4
QL03p067171 Quercus lobata HOM05D000502 ORTHO05D000356 5.7e-07 58.2 73 39.7
Solyc05g006360.2 Solanum lycopersicum HOM05D000502 ORTHO05D000356 5.7e-07 58.2 74 39.2
Sopen04g001060 Solanum pennellii HOM05D000502 ORTHO05D000356 5.7e-07 58.2 122 31.1
PGSC0003DMG400041373 Solanum tuberosum HOM05D000502 ORTHO05D000356 5.7e-07 58.2 103 34.0
Cc11_g14130 Coffea canephora HOM05D000502 ORTHO05D000356 7.5e-07 57.8 103 35.9
Haze_12126 Corylus avellana HOM05D000502 ORTHO05D000356 7.5e-07 57.8 72 40.3
Lalb_Chr05g0214421 Lupinus albus HOM05D000502 ORTHO05D000356 7.5e-07 57.8 90 34.4
Medtr5g012680 Medicago truncatula HOM05D000502 ORTHO05D000356 7.5e-07 57.8 90 31.1
Glyma.18G131300 Glycine max HOM05D000502 ORTHO05D000356 9.7e-07 57.4 88 36.4
Lj2g0011690 Lotus japonicus HOM05D000502 ORTHO05D000356 9.7e-07 57.4 83 32.5
Sp2g04640 Schrenkiella parvula HOM05D000502 ORTHO05D000356 9.7e-07 57.4 71 40.8
VMungo0251G0998 Vigna mungo HOM05D000502 ORTHO05D000356 9.7e-07 57.4 120 35.0
VMungo1215G1999 Vigna mungo HOM05D000502 ORTHO05D000356 9.7e-07 57.4 127 31.5
Actinidia02139 Actinidia chinensis HOM05D000502 ORTHO05D000356 1.3e-06 57.0 111 33.3
AL2G16780 Arabidopsis lyrata HOM05D000502 ORTHO05D000356 1.3e-06 57.0 71 42.3
AT1G24140 Arabidopsis thaliana HOM05D000502 ORTHO05D000356 1.3e-06 57.0 72 38.9
AT1G59970 Arabidopsis thaliana HOM05D000502 ORTHO05D000356 1.3e-06 57.0 71 43.7
Cpa.g.sc29.169 Carica papaya HOM05D000502 ORTHO05D000356 1.3e-06 57.0 57 47.4
CiPaw.01G181600 Carya illinoinensis HOM05D000502 ORTHO05D000356 1.3e-06 57.0 62 50.0
Duzib084G0994 Durio zibethinus HOM05D000502 ORTHO05D000356 1.3e-06 57.0 97 36.1
Duzib251G0396 Durio zibethinus HOM05D000502 ORTHO05D000356 1.3e-06 57.0 121 33.9
Duzib268G1852 Durio zibethinus HOM05D000502 ORTHO05D000356 1.3e-06 57.0 57 45.6
Glyma.08G292300 Glycine max HOM05D000502 ORTHO05D000356 1.3e-06 57.0 57 47.4
HanXRQChr17g0570141 Helianthus annuus HOM05D000502 ORTHO05D000356 1.3e-06 57.0 92 33.7
Hma1.2p1_0160F.1_g070550 Hydrangea macrophylla HOM05D000502 ORTHO05D000356 1.3e-06 57.0 58 44.8
Oeu002333.1 Olea europaea HOM05D000502 ORTHO05D000356 1.3e-06 57.0 120 36.7
PGR042G0855 Punica granatum HOM05D000502 ORTHO05D000356 1.3e-06 57.0 60 43.3
arahy.Tifrunner.gnm1.ann1.0DDN1X Arachis hypogaea HOM05D000502 ORTHO05D000356 1.7e-06 56.6 56 44.6
CAN.G412.1 Capsicum annuum HOM05D000502 ORTHO05D000356 1.7e-06 56.6 121 35.5
CAN.G58.25 Capsicum annuum HOM05D000502 ORTHO05D000356 1.7e-06 56.6 121 33.1
ClCG09G022150 Citrullus lanatus HOM05D000502 ORTHO05D000356 1.7e-06 56.6 117 38.5
Sabra14G0042300 Salix brachista HOM05D000502 ORTHO05D000356 1.7e-06 56.6 76 39.5
PGSC0003DMG400001923 Solanum tuberosum HOM05D000502 ORTHO05D000356 1.7e-06 56.6 121 30.6
PGSC0003DMG400046081 Solanum tuberosum HOM05D000502 ORTHO05D000356 1.7e-06 56.6 103 33.0
Aqoxy3G00895 Aquilegia oxysepala HOM05D000502 ORTHO05D000356 2.2e-06 56.2 75 38.7
Duzib205G1700 Durio zibethinus HOM05D000502 ORTHO05D000356 2.2e-06 56.2 97 36.1
Glyma.11G033400 Glycine max HOM05D000502 ORTHO05D000356 2.2e-06 56.2 76 34.2
Hma1.2p1_0316F.1_g123040 Hydrangea macrophylla HOM05D000502 ORTHO05D000356 2.2e-06 56.2 76 38.2
Lj6P799T41 Lonicera japonica HOM05D000502 ORTHO05D000356 2.2e-06 56.2 119 31.9
Nn4g22921 Nelumbo nucifera HOM05D000502 ORTHO05D000356 2.2e-06 56.2 128 33.6
PGSC0003DMG400004818 Solanum tuberosum HOM05D000502 ORTHO05D000356 2.2e-06 56.2 79 36.7
Actinidia14997 Actinidia chinensis HOM05D000502 ORTHO05D000356 2.8e-06 55.8 119 30.3
MSTRG.7861 Avicennia marina HOM05D000502 ORTHO05D000356 2.8e-06 55.8 114 35.1
CiPaw.03G084700 Carya illinoinensis HOM05D000502 ORTHO05D000356 2.8e-06 55.8 94 38.3
CDE11G0500 Ceratophyllum demersum HOM05D000502 ORTHO05D000356 2.8e-06 55.8 73 37.0
DCAR_013964 Daucus carota HOM05D000502 ORTHO05D000356 2.8e-06 55.8 111 30.6
Medtr5g036410 Medicago truncatula HOM05D000502 ORTHO05D000356 2.8e-06 55.8 84 36.9
Sopen04g001070 Solanum pennellii HOM05D000502 ORTHO05D000356 2.8e-06 55.8 121 32.2
Thecc.02G240500 Theobroma cacao HOM05D000502 ORTHO05D000356 2.8e-06 55.8 71 39.4
Actinidia14422 Actinidia chinensis HOM05D000502 ORTHO05D000356 3.7e-06 55.5 103 31.1
HanXRQChr13g0422851 Helianthus annuus HOM05D000502 ORTHO05D000356 3.7e-06 55.5 121 34.7
QL12p011993 Quercus lobata HOM05D000502 ORTHO05D000356 3.7e-06 55.5 76 35.5
Solyc04g005050.1 Solanum lycopersicum HOM05D000502 ORTHO05D000356 3.7e-06 55.5 121 29.8
Sopen08g027030 Solanum pennellii HOM05D000502 ORTHO05D000356 3.7e-06 55.5 79 36.7
TWI60G1059 Tripterygium wilfordii HOM05D000502 ORTHO05D000356 3.7e-06 55.5 76 38.2
A09p40750 Brassica napus HOM05D000502 ORTHO05D000356 4.8e-06 55.1 91 36.3
BraA09t39569Z Brassica rapa HOM05D000502 ORTHO05D000356 4.8e-06 55.1 91 36.3
Glyma.01G208800 Glycine max HOM05D000502 ORTHO05D000356 4.8e-06 55.1 74 33.8
Lj8A263T42 Lonicera japonica HOM05D000502 ORTHO05D000356 4.8e-06 55.1 121 32.2
AL7G38110 Arabidopsis lyrata HOM05D000502 ORTHO05D000356 6.3e-06 54.7 74 37.8
MSTRG.633 Avicennia marina HOM05D000502 ORTHO05D000356 6.3e-06 54.7 127 32.3
CDE04G3250 Ceratophyllum demersum HOM05D000502 ORTHO05D000356 6.3e-06 54.7 97 35.1
Ca_23119_v3 Cicer arietinum L. HOM05D000502 ORTHO05D000356 6.3e-06 54.7 106 37.7
MELO3C021495.2 Cucumis melo HOM05D000502 ORTHO05D000356 6.3e-06 54.7 59 52.5
Gorai.007G028300 Gossypium raimondii HOM05D000502 ORTHO05D000356 6.3e-06 54.7 84 38.1
SGA_v2.0_scaffold52G19191 Striga asiatica HOM05D000502 ORTHO05D000356 6.3e-06 54.7 113 33.6
THA.LOC104823666 Tarenaya hassleriana HOM05D000502 ORTHO05D000356 6.3e-06 54.7 57 45.6
CARHR024410 Cardamine hirsuta HOM05D000502 ORTHO05D000356 8.2e-06 54.3 91 34.1
Ciclev10024210m.g Citrus clementina HOM05D000502 ORTHO05D000356 8.2e-06 54.3 76 38.2
ECA240G2271 Erigeron canadensis HOM05D000502 ORTHO05D000356 8.2e-06 54.3 82 34.1
Gohir.A11G026800 Gossypium hirsutum HOM05D000502 ORTHO05D000356 8.2e-06 54.3 84 38.1
Gohir.D11G026100 Gossypium hirsutum HOM05D000502 ORTHO05D000356 8.2e-06 54.3 84 38.1
Psat2g112760 Pisum sativum HOM05D000502 ORTHO05D000356 8.2e-06 54.3 63 44.4
TAR629G2860 Trochodendron aralioides HOM05D000502 ORTHO05D000356 8.2e-06 54.3 116 32.8


User provided reference genes

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