Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G31249 Trifolium pratense HOM05D006464 ORTHO05D007923 6.5e-157 557.4 285 100.0
Psat7g088600 Pisum sativum HOM05D006464 ORTHO05D007923 3.3e-129 465.3 268 85.1
Ca_18242_v3 Cicer arietinum L. HOM05D006464 ORTHO05D007923 9.8e-121 437.2 269 80.7
Lj4g0005133 Lotus japonicus HOM05D006464 ORTHO05D007923 2.4e-111 406.0 265 73.6
Medtr4g094688 Medicago truncatula HOM05D006464 ORTHO05D007923 8.3e-104 380.9 268 78.4
Glyma.19G055700 Glycine max HOM05D006464 ORTHO05D007923 7.8e-102 374.4 268 68.7
VMungo0464G1450 Vigna mungo HOM05D006464 ORTHO05D007923 1.9e-100 369.8 267 70.0
Lalb_Chr07g0188381 Lupinus albus HOM05D006464 ORTHO05D007923 1.2e-97 360.5 260 67.3
Phvul.004G057900 Phaseolus vulgaris HOM05D006464 ORTHO05D007923 8.1e-91 337.8 199 79.4
QL03p065678 Quercus lobata HOM05D006464 ORTHO05D007923 2.3e-90 336.3 211 74.4
arahy.Tifrunner.gnm1.ann1.K4I1Z6 Arachis hypogaea HOM05D006464 ORTHO05D007923 3.1e-90 335.9 199 78.4
QL04p093513 Quercus lobata HOM05D006464 ORTHO05D007923 2.6e-89 332.8 211 73.9
QL93p0310_0071 Quercus lobata HOM05D006464 ORTHO05D007923 2.6e-89 332.8 211 73.9
Cfa009889 Carpinus fangiana HOM05D006464 ORTHO05D007923 2.2e-88 329.7 212 76.4
FAN11G0790 Fragaria x ananassa HOM05D006464 ORTHO05D007923 1.2e-86 323.9 209 73.7
Atru.chr4.442 Acer truncatum HOM05D006464 ORTHO05D007923 1.6e-86 323.6 205 73.7
Ciclev10004323m.g Citrus clementina HOM05D006464 ORTHO05D007923 1.6e-86 323.6 261 61.7
FAN16G1625 Fragaria x ananassa HOM05D006464 ORTHO05D007923 4.6e-86 322.0 209 73.2
Haze_23251 Corylus avellana HOM05D006464 ORTHO05D007923 6.0e-86 321.6 220 72.3
FvH4_3g14450 Fragaria vesca HOM05D006464 ORTHO05D007923 6.0e-86 321.6 209 73.2
FAN25G3388 Fragaria x ananassa HOM05D006464 ORTHO05D007923 6.0e-86 321.6 198 76.8
FAN21G2631 Fragaria x ananassa HOM05D006464 ORTHO05D007923 1.0e-85 320.9 209 73.2
Gohir.A10G180000 Gossypium hirsutum HOM05D006464 ORTHO05D007923 1.3e-85 320.5 211 72.5
Potri.010G173400 Populus trichocarpa HOM05D006464 ORTHO05D007923 1.5e-84 317.0 221 68.8
Gohir.D10G186900 Gossypium hirsutum HOM05D006464 ORTHO05D007923 1.9e-84 316.6 211 72.5
Gorai.011G209700 Gossypium raimondii HOM05D006464 ORTHO05D007923 2.5e-84 316.2 211 72.5
RcHm_v2.0_Chr5g0023761 Rosa chinensis HOM05D006464 ORTHO05D007923 2.5e-84 316.2 197 76.1
Thecc.10G179300 Theobroma cacao HOM05D006464 ORTHO05D007923 3.3e-84 315.8 211 70.1
Prupe.4G129400 Prunus persica HOM05D006464 ORTHO05D007923 1.2e-83 313.9 199 75.4
Sabra10G0133300 Salix brachista HOM05D006464 ORTHO05D007923 1.2e-83 313.9 213 70.0
MD05G1236700 Malus domestica HOM05D006464 ORTHO05D007923 2.1e-83 313.2 199 75.4
CiPaw.11G057900 Carya illinoinensis HOM05D006464 ORTHO05D007923 3.6e-83 312.4 192 77.1
Hma1.2p1_0151F.1_g067090 Hydrangea macrophylla HOM05D006464 ORTHO05D007923 3.6e-83 312.4 202 72.8
Duzib114G0960 Durio zibethinus HOM05D006464 ORTHO05D007923 4.7e-83 312.0 205 71.7
Dinv19578 Davidia involucrata HOM05D006464 ORTHO05D007923 1.1e-82 310.8 201 72.6
Actinidia12756 Actinidia chinensis HOM05D006464 ORTHO05D007923 1.5e-81 307.0 201 72.6
CARHR073150 Cardamine hirsuta HOM05D006464 ORTHO05D007923 5.8e-81 305.1 213 68.1
Thhalv10018121m.g Eutrema salsugineum HOM05D006464 ORTHO05D007923 7.6e-81 304.7 202 69.8
AL2G40100 Arabidopsis lyrata HOM05D006464 ORTHO05D007923 1.7e-80 303.5 215 66.0
vmacro11686 Vaccinium macrocarpon HOM05D006464 ORTHO05D007923 1.7e-80 303.5 198 71.2
TWI36G0676 Tripterygium wilfordii HOM05D006464 ORTHO05D007923 3.8e-80 302.4 209 69.4
Lsat_1_v5_gn_7_110921 Lactuca sativa HOM05D006464 ORTHO05D007923 6.4e-80 301.6 199 69.8
CSS0002738 Camellia sinensis var. sinensis HOM05D006464 ORTHO05D007923 1.1e-79 300.8 216 69.0
Lj2C11T2 Lonicera japonica HOM05D006464 ORTHO05D007923 1.1e-79 300.8 213 66.7
Rhsim06G0243700 Rhododendron simsii HOM05D006464 ORTHO05D007923 1.1e-79 300.8 198 71.7
AT1G79490 Arabidopsis thaliana HOM05D006464 ORTHO05D007923 3.2e-79 299.3 215 65.1
Manes.14G157747 Manihot esculenta HOM05D006464 ORTHO05D007923 3.2e-79 299.3 200 68.5
Cpa.g.sc32.87 Carica papaya HOM05D006464 ORTHO05D007923 5.4e-79 298.5 205 67.8
THA.LOC104812381 Tarenaya hassleriana HOM05D006464 ORTHO05D007923 5.4e-79 298.5 202 69.8
Aa31LG4G1530 Aethionema arabicum HOM05D006464 ORTHO05D007923 7.1e-79 298.1 202 70.3
ClCG11G008250 Citrullus lanatus HOM05D006464 ORTHO05D007923 7.1e-79 298.1 213 67.6
CsaV3_2G033410 Cucumis sativus L. HOM05D006464 ORTHO05D007923 9.2e-79 297.7 202 69.3
COL.COLO4_19419 Corchorus olitorius HOM05D006464 ORTHO05D007923 1.2e-78 297.4 198 70.2
DCAR_013714 Daucus carota HOM05D006464 ORTHO05D007923 1.2e-78 297.4 199 68.3
MSTRG.16085 Avicennia marina HOM05D006464 ORTHO05D007923 2.1e-78 296.6 202 67.8
Sp5g34540 Schrenkiella parvula HOM05D006464 ORTHO05D007923 2.7e-78 296.2 202 68.3
PGR031G1485 Punica granatum HOM05D006464 ORTHO05D007923 3.5e-78 295.8 205 68.8
Cc03_g09090 Coffea canephora HOM05D006464 ORTHO05D007923 6.0e-78 295.0 203 66.0
MELO3C008113.2 Cucumis melo HOM05D006464 ORTHO05D007923 6.0e-78 295.0 197 70.6
Sopen08g026650 Solanum pennellii HOM05D006464 ORTHO05D007923 1.0e-77 294.3 198 71.2
PGSC0003DMG400026230 Solanum tuberosum HOM05D006464 ORTHO05D007923 1.0e-77 294.3 198 71.2
SGA_v2.0_scaffold7G03621 Striga asiatica HOM05D006464 ORTHO05D007923 1.0e-77 294.3 202 66.3
CAN.G1856.7 Capsicum annuum HOM05D006464 ORTHO05D007923 1.3e-77 293.9 204 67.6
Solyc08g078150.1 Solanum lycopersicum HOM05D006464 ORTHO05D007923 3.9e-77 292.4 198 70.7
Oeu033075.1 Olea europaea HOM05D006464 ORTHO05D007923 8.7e-77 291.2 200 68.0
TAR629G0921 Trochodendron aralioides HOM05D006464 ORTHO05D007923 4.3e-76 288.9 198 68.2
Sc19g0006030 Simmondsia chinensis HOM05D006464 ORTHO05D007923 9.6e-76 287.7 199 65.3
Ah.16g106150 Amaranthus hybridus HOM05D006464 ORTHO05D007923 1.6e-75 287.0 205 63.4
SalBow8G2731 Salvia bowleyana HOM05D006464 ORTHO05D007923 1.6e-75 287.0 202 66.3
AUR62037646 Chenopodium quinoa HOM05D006464 ORTHO05D007923 4.7e-75 285.4 198 65.7
C06p29860 Brassica napus HOM05D006464 ORTHO05D007923 8.1e-75 284.6 202 67.8
Nn2g12307 Nelumbo nucifera HOM05D006464 ORTHO05D007923 8.1e-75 284.6 204 65.2
BolC6t38148H Brassica oleracea HOM05D006464 ORTHO05D007923 4.0e-74 282.3 202 67.3
A07p27120 Brassica napus HOM05D006464 ORTHO05D007923 9.0e-74 281.2 203 67.0
BraA07t30357Z Brassica rapa HOM05D006464 ORTHO05D007923 1.5e-73 280.4 203 66.5
arahy.Tifrunner.gnm1.ann1.HD0F2Q Arachis hypogaea HOM05D006464 ORTHO05D007923 2.0e-73 280.0 212 66.0
BcaB02g07217 Brassica carinata HOM05D006464 ORTHO05D007923 2.6e-73 279.6 194 67.5
unitig_749.g13442 Utricularia gibba HOM05D006464 ORTHO05D007923 4.4e-73 278.9 199 66.3
Aqoxy1G01398 Aquilegia oxysepala HOM05D006464 ORTHO05D007923 9.9e-73 277.7 191 67.0
AUR62041047 Chenopodium quinoa HOM05D006464 ORTHO05D007923 4.9e-72 275.4 198 64.1
PSO541G0939 Papaver somniferum HOM05D006464 ORTHO05D007923 7.8e-70 268.1 211 60.7
HanXRQChr10g0283251 Helianthus annuus HOM05D006464 ORTHO05D007923 1.0e-69 267.7 200 64.5
PSO675G4723 Papaver somniferum HOM05D006464 ORTHO05D007923 6.6e-69 265.0 211 60.2
arahy.Tifrunner.gnm1.ann1.SHRD5B Arachis hypogaea HOM05D006464 ORTHO05D007923 9.6e-68 261.2 201 63.7
MBI02_g01129_MAGBIO Magnolia biondii HOM05D006464 ORTHO05D007923 1.7e-64 250.4 191 61.3
CSS0048512 Camellia sinensis var. sinensis HOM05D006464 ORTHO05D007923 4.9e-64 248.8 181 69.1
MD10G1213600 Malus domestica HOM05D006464 ORTHO05D007923 4.9e-64 248.8 152 76.3
SHI18012 Sapria himalayana HOM05D006464 ORTHO05D007923 7.1e-63 245.0 199 55.8
Sed0008800 Sechium edule HOM05D006464 ORTHO05D007923 2.1e-62 243.4 195 60.5
Migut.M01509 Erythranthe guttata HOM05D006464 ORTHO05D007923 8.7e-61 238.0 152 71.7
Hma1.2p1_0151F.1_g067100 Hydrangea macrophylla HOM05D006464 ORTHO05D007923 3.3e-60 236.1 187 62.0
Nitab4.5_0020695g0010 Nicotiana tabacum HOM05D006464 ORTHO05D007923 5.6e-60 235.3 152 71.1
Peaxi162Scf00207g00514 Petunia axillaris HOM05D006464 ORTHO05D007923 9.6e-60 234.6 155 72.3
ECA236G4525 Erigeron canadensis HOM05D006464 ORTHO05D007923 1.6e-59 233.8 152 69.7
CSS0045056 Camellia sinensis var. sinensis HOM05D006464 ORTHO05D007923 3.4e-57 226.1 216 56.5
Carub.0002s2635 Capsella rubella HOM05D006464 ORTHO05D007923 3.4e-57 226.1 146 71.2
BcaC08g45354 Brassica carinata HOM05D006464 ORTHO05D007923 1.7e-56 223.8 154 68.8
CDE07G1255 Ceratophyllum demersum HOM05D006464 ORTHO05D007923 4.9e-56 222.2 198 52.5
Aa31LG4G1550 Aethionema arabicum HOM05D006464 ORTHO05D007923 1.9e-55 220.3 143 72.0
CDE04G3166 Ceratophyllum demersum HOM05D006464 ORTHO05D007923 1.9e-55 220.3 202 52.0
BcaC08g45352 Brassica carinata HOM05D006464 ORTHO05D007923 1.1e-52 211.1 200 57.0
HPP92_005952 Vanilla planifolia HOM05D006464 ORTHO05D007923 1.4e-50 204.1 181 50.3
Actinidia24662 Actinidia chinensis HOM05D006464 ORTHO05D007923 1.8e-50 203.8 148 65.5
GSVIVG01020873001 Vitis vinifera HOM05D006464 ORTHO05D007923 1.8e-50 203.8 193 53.4
Eucgr.H04993 Eucalyptus grandis HOM05D006464 ORTHO05D007923 3.2e-47 193.0 187 53.5
ATR0763G028 Amborella trichopoda HOM05D006464 ORTHO05D007923 8.7e-45 184.9 142 58.5
SEGI_39627 Sequoiadendron giganteum HOM05D006464 ORTHO05D007923 7.9e-38 161.8 180 43.9
TPR.G39331 Trifolium pratense HOM05D006464 ORTHO05D007923 2.6e-28 130.2 63 100.0
QL04p093175 Quercus lobata HOM05D006464 ORTHO05D007923 1.7e-24 117.5 71 74.6
EL10Ac7g17377 Beta vulgaris HOM05D006464 ORTHO05D007923 7.0e-18 95.5 68 63.2
Oeu046263.1 Olea europaea HOM05D006464 ORTHO05D007923 9.1e-18 95.1 79 58.2
Zm00001eb071030 Zea mays HOM05D006464 ORTHO05D007923 2.5e-15 87.0 179 30.2
Os04g0612800 Oryza sativa ssp. japonica HOM05D006464 ORTHO05D007923 7.2e-15 85.5 183 29.5
SMO196G0223 Selaginella moellendorffii HOM05D006464 ORTHO05D007923 5.7e-12 75.9 96 33.3
BcaC05g25795 Brassica carinata HOM05D004079 ORTHO05D005437 4.5e-09 66.2 100 31.0
C05p17340 Brassica napus HOM05D004079 ORTHO05D005437 4.5e-09 66.2 100 31.0
BolC5t30434H Brassica oleracea HOM05D004079 ORTHO05D005437 4.5e-09 66.2 100 31.0
AUR62021753 Chenopodium quinoa HOM05D004079 ORTHO05D005437 1.3e-08 64.7 106 29.2
COL.COLO4_37914 Corchorus olitorius HOM05D004079 ORTHO05D005437 1.3e-08 64.7 102 31.4
Aqoxy3G00809 Aquilegia oxysepala HOM05D004079 ORTHO05D005437 2.2e-08 63.9 133 30.1
Aqoxy3G03237 Aquilegia oxysepala HOM05D004079 ORTHO05D005437 2.2e-08 63.9 94 34.0
Carub.0001s1855 Capsella rubella HOM05D004079 ORTHO05D005437 2.2e-08 63.9 92 34.8
Glyma.11G007400 Glycine max HOM05D000424 ORTHO05D000355 2.2e-08 63.9 152 32.2
SHI32576 Sapria himalayana HOM05D004079 ORTHO05D005437 2.2e-08 63.9 124 31.5
Sp1g16880 Schrenkiella parvula HOM05D004079 ORTHO05D005437 2.2e-08 63.9 96 32.3
Glyma.01G235800 Glycine max HOM05D000424 ORTHO05D000355 3.8e-08 63.2 156 32.1
TWI15G0380 Tripterygium wilfordii HOM05D004079 ORTHO05D005437 5.0e-08 62.8 99 31.3
AUR62008344 Chenopodium quinoa HOM05D004079 ORTHO05D005437 6.5e-08 62.4 106 30.2
Ciclev10018829m.g Citrus clementina HOM05D004079 ORTHO05D005437 1.1e-07 61.6 98 28.6
Phvul.002G043300 Phaseolus vulgaris HOM05D000424 ORTHO05D000355 1.1e-07 61.6 186 29.0
CARHR019550 Cardamine hirsuta HOM05D004079 ORTHO05D005437 1.5e-07 61.2 146 25.3
Thhalv10009547m.g Eutrema salsugineum HOM05D004079 ORTHO05D005437 1.5e-07 61.2 92 32.6
QL06p001583 Quercus lobata HOM05D000424 ORTHO05D000355 1.5e-07 61.2 155 29.0
Hma1.2p1_0104F.1_g050360 Hydrangea macrophylla HOM05D004079 ORTHO05D005437 1.9e-07 60.8 132 27.3
LjContig00408g0001360 Lotus japonicus HOM05D000424 ORTHO05D000355 1.9e-07 60.8 155 28.4
Cfa019013 Carpinus fangiana HOM05D004079 ORTHO05D005437 2.5e-07 60.5 112 28.6
QL10p014896 Quercus lobata HOM05D004079 ORTHO05D005437 2.5e-07 60.5 112 29.5
Glyma.04G175400 Glycine max HOM05D004079 ORTHO05D005437 3.2e-07 60.1 108 29.6
Lj1g0021535 Lotus japonicus HOM05D004079 ORTHO05D005437 3.2e-07 60.1 98 30.6
Atru.chr9.2336 Acer truncatum HOM05D004079 ORTHO05D005437 4.2e-07 59.7 99 28.3
Ah.02g113130 Amaranthus hybridus HOM05D004079 ORTHO05D005437 4.2e-07 59.7 98 31.6
AL1G31480 Arabidopsis lyrata HOM05D004079 ORTHO05D005437 4.2e-07 59.7 92 32.6
AT1G18900 Arabidopsis thaliana HOM05D004079 ORTHO05D005437 4.2e-07 59.7 92 32.6
Duzib205G1164 Durio zibethinus HOM05D004079 ORTHO05D005437 4.2e-07 59.7 98 31.6
Medtr3g045420 Medicago truncatula HOM05D004079 ORTHO05D005437 4.2e-07 59.7 102 30.4
TAR371G0979 Trochodendron aralioides HOM05D004079 ORTHO05D005437 5.5e-07 59.3 98 31.6
Aa31LG7G3680 Aethionema arabicum HOM05D004079 ORTHO05D005437 7.2e-07 58.9 90 32.2
EL10Ac5g10922 Beta vulgaris HOM05D004079 ORTHO05D005437 9.4e-07 58.5 98 30.6
Cfa008465 Carpinus fangiana HOM05D000424 ORTHO05D000355 1.2e-06 58.2 171 29.2
Hund12224 Selenicereus undatus HOM05D006926 ORTHO05D008863 1.2e-06 58.2 122 29.5
Actinidia04930 Actinidia chinensis HOM05D004079 ORTHO05D005437 1.6e-06 57.8 111 29.7
Haze_07393 Corylus avellana HOM05D004079 ORTHO05D005437 1.6e-06 57.8 99 29.3
Duzib151G0724 Durio zibethinus HOM05D006926 ORTHO05D008863 2.1e-06 57.4 174 24.1
EL10Ac7g17845 Beta vulgaris HOM05D000424 ORTHO05D000355 2.7e-06 57.0 170 25.3
THA.LOC104818923 Tarenaya hassleriana HOM05D006926 ORTHO05D008863 2.7e-06 57.0 121 26.4
AagrBONN_evm.TU.Sc2ySwM_344.1991 Anthoceros agrestis HOM05D004079 ORTHO05D008352 3.6e-06 56.6 103 26.2
Gohir.A11G028901 Gossypium hirsutum HOM05D004079 ORTHO05D005437 3.6e-06 56.6 98 29.6
Gohir.D11G032200 Gossypium hirsutum HOM05D004079 ORTHO05D005437 3.6e-06 56.6 98 29.6
Gorai.007G035000 Gossypium raimondii HOM05D004079 ORTHO05D005437 3.6e-06 56.6 98 29.6
Carub.0002s2154 Capsella rubella HOM05D004079 ORTHO05D005437 6.1e-06 55.8 92 30.4
Cc03_g04090 Coffea canephora HOM05D000424 ORTHO05D000355 6.1e-06 55.8 158 29.7
Thhalv10018113m.g Eutrema salsugineum HOM05D004079 ORTHO05D005437 8.0e-06 55.5 92 29.3
Mapoly0031s0063 Marchantia polymorpha HOM05D004079 ORTHO05D005437 8.0e-06 55.5 122 27.9
TAR629G1274 Trochodendron aralioides HOM05D004079 ORTHO05D005437 8.0e-06 55.5 98 30.6


User provided reference genes

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