Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G31231 Trifolium pratense HOM05D005923 ORTHO05D007376 0.0e+00 1472.6 723 100.0
Medtr7g080490 Medicago truncatula HOM05D005923 ORTHO05D007376 0.0e+00 1284.6 724 87.2
Psat3g105160 Pisum sativum HOM05D005923 ORTHO05D007376 0.0e+00 1260.0 720 85.0
Ca_08014_v3 Cicer arietinum L. HOM05D005923 ORTHO05D007376 0.0e+00 1251.1 722 84.3
Lj1g0007040 Lotus japonicus HOM05D005923 ORTHO05D007376 0.0e+00 1178.3 704 80.3
Glyma.18G244700 Glycine max HOM05D005923 ORTHO05D007376 0.0e+00 1170.6 725 79.2
Phvul.008G051900 Phaseolus vulgaris HOM05D005923 ORTHO05D007376 0.0e+00 1142.1 718 76.7
Glyma.09G248100 Glycine max HOM05D005923 ORTHO05D007376 0.0e+00 1141.7 722 78.0
Lalb_Chr03g0038141 Lupinus albus HOM05D005923 ORTHO05D007376 0.0e+00 1119.8 704 77.1
VMungo1383G0851 Vigna mungo HOM05D005923 ORTHO05D007376 0.0e+00 1114.8 720 75.7
arahy.Tifrunner.gnm1.ann1.VQ08NH Arachis hypogaea HOM05D005923 ORTHO05D007376 4.7e-305 1050.8 722 72.2
Cfa006234 Carpinus fangiana HOM05D005923 ORTHO05D007376 2.1e-297 1025.4 703 69.7
Haze_04596 Corylus avellana HOM05D005923 ORTHO05D007376 9.9e-295 1016.5 703 69.1
arahy.Tifrunner.gnm1.ann1.51VLQD Arachis hypogaea HOM05D005923 ORTHO05D007376 2.9e-294 1015.0 734 69.2
QL10p015972 Quercus lobata HOM05D005923 ORTHO05D007376 3.2e-293 1011.5 700 69.1
Duzib128G1624 Durio zibethinus HOM05D005923 ORTHO05D007376 7.3e-290 1000.3 727 65.1
RcHm_v2.0_Chr3g0447491 Rosa chinensis HOM05D005923 ORTHO05D007376 1.3e-289 999.6 721 67.1
CiPaw.07G083600 Carya illinoinensis HOM05D005923 ORTHO05D007376 2.0e-287 992.3 703 68.3
TWI18G0568 Tripterygium wilfordii HOM05D005923 ORTHO05D007376 1.4e-285 986.1 699 67.5
Atru.chr12.1669 Acer truncatum HOM05D005923 ORTHO05D007376 6.0e-284 980.7 698 67.0
COL.COLO4_36605 Corchorus olitorius HOM05D005923 ORTHO05D007376 7.4e-282 973.8 704 65.5
Gohir.D03G071400 Gossypium hirsutum HOM05D005923 ORTHO05D007376 1.3e-281 973.0 700 66.0
Gorai.003G088600 Gossypium raimondii HOM05D005923 ORTHO05D007376 2.8e-281 971.8 700 65.9
MD12G1262500 Malus domestica HOM05D005923 ORTHO05D007376 6.2e-281 970.7 700 66.1
Potri.008G077000 Populus trichocarpa HOM05D005923 ORTHO05D007376 1.8e-280 969.1 705 65.1
FvH4_6g00140 Fragaria vesca HOM05D005923 ORTHO05D007376 3.1e-280 968.4 704 65.9
TAR365G1048 Trochodendron aralioides HOM05D005923 ORTHO05D007376 4.0e-280 968.0 704 66.3
Potri.010G180800 Populus trichocarpa HOM05D005923 ORTHO05D007376 9.0e-280 966.8 705 65.0
Prupe.6G364500 Prunus persica HOM05D005923 ORTHO05D007376 9.9e-279 963.4 663 69.8
Manes.12G002100 Manihot esculenta HOM05D005923 ORTHO05D007376 4.9e-278 961.1 701 65.5
Ciclev10011172m.g Citrus clementina HOM05D005923 ORTHO05D007376 5.1e-275 951.0 701 64.3
Sabra08G0057400 Salix brachista HOM05D005923 ORTHO05D007376 4.3e-274 948.0 706 63.9
CANSAT21G0310 Cannabis sativa HOM05D005923 ORTHO05D007376 7.4e-274 947.2 702 64.4
Sabra10G0138600 Salix brachista HOM05D005923 ORTHO05D007376 1.1e-272 943.3 764 59.9
Cpa.g.sc99.42 Carica papaya HOM05D005923 ORTHO05D007376 4.9e-270 934.5 719 62.3
CSS0002064 Camellia sinensis var. sinensis HOM05D005923 ORTHO05D007376 2.5e-269 932.2 698 65.5
Eucgr.B01459 Eucalyptus grandis HOM05D005923 ORTHO05D007376 1.1e-266 923.3 703 63.9
Actinidia03247 Actinidia chinensis HOM05D005923 ORTHO05D007376 8.2e-265 917.1 698 64.3
GSVIVG01003759001 Vitis vinifera HOM05D005923 ORTHO05D007376 5.9e-263 911.0 709 64.0
CsaV3_2G010290 Cucumis sativus L. HOM05D005923 ORTHO05D007376 2.5e-261 905.6 700 62.7
PGR031G2609 Punica granatum HOM05D005923 ORTHO05D007376 1.6e-260 902.9 726 60.1
ClCG11G012400 Citrullus lanatus HOM05D005923 ORTHO05D007376 1.3e-259 899.8 704 61.8
Rhsim05G0165000 Rhododendron simsii HOM05D005923 ORTHO05D007376 1.1e-258 896.7 706 62.2
THA.LOC104827232 Tarenaya hassleriana HOM05D005923 ORTHO05D007376 4.8e-257 891.3 731 60.6
Thhalv10020144m.g Eutrema salsugineum HOM05D005923 ORTHO05D007376 3.2e-253 878.6 703 61.5
Carub.0003s0247 Capsella rubella HOM05D005923 ORTHO05D007376 9.4e-253 877.1 702 61.7
Hund21927 Selenicereus undatus HOM05D005923 ORTHO05D007376 1.0e-251 873.6 719 60.8
Sed0021637 Sechium edule HOM05D005923 ORTHO05D007376 3.9e-251 871.7 707 61.4
AUR62014468 Chenopodium quinoa HOM05D005923 ORTHO05D007376 8.8e-251 870.5 715 60.6
Sp3g02330 Schrenkiella parvula HOM05D005923 ORTHO05D007376 1.1e-250 870.2 703 61.3
AT3G03305 Arabidopsis thaliana HOM05D005923 ORTHO05D007376 2.6e-250 869.0 703 60.9
Thecc.05G188500 Theobroma cacao HOM05D005923 ORTHO05D007376 3.3e-250 868.6 576 70.1
Actinidia06787 Actinidia chinensis HOM05D005923 ORTHO05D007376 2.2e-249 865.9 703 61.7
AL3G12930 Arabidopsis lyrata HOM05D005923 ORTHO05D007376 1.8e-248 862.8 703 60.5
CARHR077340 Cardamine hirsuta HOM05D005923 ORTHO05D007376 9.1e-248 860.5 702 60.7
AUR62034530 Chenopodium quinoa HOM05D005923 ORTHO05D007376 9.1e-248 860.5 715 60.4
Aa31LG5G13800 Aethionema arabicum HOM05D005923 ORTHO05D000304 1.4e-245 853.2 711 60.1
Ah.04g159240 Amaranthus hybridus HOM05D005923 ORTHO05D007376 1.9e-245 852.8 717 60.4
Sc16g0010600 Simmondsia chinensis HOM05D005923 ORTHO05D007376 9.4e-245 850.5 699 60.7
Dinv21358 Davidia involucrata HOM05D005923 ORTHO05D007376 1.6e-244 849.7 620 66.5
EL10Ac4g10017 Beta vulgaris HOM05D005923 ORTHO05D007376 5.2e-243 844.7 715 59.7
A05p43880 Brassica napus HOM05D005923 ORTHO05D007376 2.6e-242 842.4 707 59.7
Aqoxy2G04094 Aquilegia oxysepala HOM05D005923 ORTHO05D007376 1.3e-241 840.1 710 59.4
C05p63470 Brassica napus HOM05D005923 ORTHO05D007376 1.1e-240 837.0 708 59.2
BraA05t23125Z Brassica rapa HOM05D005923 ORTHO05D007376 1.4e-240 836.6 707 59.1
Nitab4.5_0001003g0070 Nicotiana tabacum HOM05D005923 ORTHO05D007376 1.4e-240 836.6 722 59.1
BolC5t35012H Brassica oleracea HOM05D005923 ORTHO05D007376 1.8e-240 836.3 708 59.0
CAN.G321.22 Capsicum annuum HOM05D005923 ORTHO05D007376 3.1e-240 835.5 723 58.5
Peaxi162Scf00296g01112 Petunia axillaris HOM05D005923 ORTHO05D007376 2.6e-239 832.4 710 60.0
PSO732G0688 Papaver somniferum HOM05D005923 ORTHO05D007376 4.5e-239 831.6 702 58.7
Oeu034703.2 Olea europaea HOM05D005923 ORTHO05D007376 3.8e-238 828.6 758 56.6
PSO675G7036 Papaver somniferum HOM05D005923 ORTHO05D007376 8.5e-238 827.4 702 58.8
MBI08_g20603_MAGBIO Magnolia biondii HOM05D005923 ORTHO05D007376 1.9e-237 826.2 724 57.2
MSTRG.27409 Avicennia marina HOM05D005923 ORTHO05D007376 5.2e-235 818.1 697 57.2
Migut.F02096 Erythranthe guttata HOM05D005923 ORTHO05D007376 3.7e-233 812.0 704 58.7
Sopen11g004360 Solanum pennellii HOM05D005923 ORTHO05D007376 7.0e-232 807.7 702 58.1
Cc09_g04040 Coffea canephora HOM05D005923 ORTHO05D007376 9.1e-232 807.4 664 60.1
SalBow1G7804 Salvia bowleyana HOM05D005923 ORTHO05D007376 7.7e-231 804.3 698 57.2
ECA232G3428 Erigeron canadensis HOM05D005923 ORTHO05D007376 4.5e-223 778.5 676 57.0
SGA_v2.0_scaffold62G21491 Striga asiatica HOM05D005923 ORTHO05D007376 8.8e-219 764.2 699 55.5
Lsat_1_v5_gn_0_14641 Lactuca sativa HOM05D005923 ORTHO05D007376 2.0e-218 763.1 709 53.9
Solyc11g008570.2 Solanum lycopersicum HOM05D005923 ORTHO05D007376 7.5e-218 761.1 702 55.7
SalBow1G1244 Salvia bowleyana HOM05D005923 ORTHO05D007376 1.3e-217 760.4 662 57.3
HPP92_013562 Vanilla planifolia HOM05D005923 ORTHO05D007376 1.1e-216 757.3 733 53.1
DCAR_031594 Daucus carota HOM05D005923 ORTHO05D007376 1.8e-216 756.5 649 59.2
Os01g0894000 Oryza sativa ssp. japonica HOM05D005923 ORTHO05D007376 2.0e-215 753.1 726 51.2
Zm00001eb144980 Zea mays HOM05D005923 ORTHO05D007376 1.2e-212 743.8 710 51.8
Gohir.A02G106500 Gossypium hirsutum HOM05D005923 ORTHO05D007376 3.0e-211 739.2 547 63.6
ATR0824G241 Amborella trichopoda HOM05D005923 ORTHO05D007376 1.8e-208 729.9 695 53.7
HanXRQChr10g0283011 Helianthus annuus HOM05D005923 ORTHO05D007376 5.4e-208 728.4 691 55.0
PGSC0003DMG400016251 Solanum tuberosum HOM05D005923 ORTHO05D007376 4.6e-207 725.3 637 57.5
BcaC05g30305 Brassica carinata HOM05D000399 ORTHO05D000304 2.2e-201 706.4 686 54.8
Os07g0274100 Oryza sativa ssp. japonica HOM05D005923 ORTHO05D007376 1.7e-185 653.7 707 46.4
Lj8A198T52 Lonicera japonica HOM05D005923 ORTHO05D007376 3.9e-182 642.5 649 53.2
unitig_46.g18570 Utricularia gibba HOM05D005923 ORTHO05D007376 8.6e-182 641.3 706 46.9
Ah.06g195310 Amaranthus hybridus HOM05D005923 ORTHO05D007376 1.4e-176 624.0 593 53.5
Nitab4.5_0009631g0020 Nicotiana tabacum HOM05D005923 ORTHO05D007376 1.2e-175 620.9 720 47.8
CDE09G0389 Ceratophyllum demersum HOM05D005923 ORTHO05D007376 3.6e-172 609.4 479 60.8
arahy.Tifrunner.gnm1.ann1.25XALN Arachis hypogaea HOM05D005923 ORTHO05D007376 2.9e-169 599.7 500 63.4
MELO3C008611.2 Cucumis melo HOM05D005923 ORTHO05D007376 3.9e-150 536.2 357 71.1
Atru.chr12.1657 Acer truncatum HOM05D005923 ORTHO05D007376 1.3e-140 504.6 431 57.5
SMO228G0200 Selaginella moellendorffii HOM05D005923 ORTHO05D007376 5.9e-130 469.2 678 40.4
MBI12_g21502_MAGBIO Magnolia biondii HOM05D005923 ORTHO05D007376 2.9e-129 466.8 709 37.1
Mapoly0048s0028 Marchantia polymorpha HOM05D005923 ORTHO05D007376 4.5e-122 443.0 784 37.1
ATR0564G177 Amborella trichopoda HOM05D005923 ORTHO05D007376 2.9e-121 440.3 681 37.3
HPP92_028167 Vanilla planifolia HOM05D005923 ORTHO05D007376 1.5e-120 438.0 691 37.0
AagrBONN_evm.TU.Sc2ySwM_344.5471 Anthoceros agrestis HOM05D005923 ORTHO05D007376 4.2e-120 436.4 753 36.4
vmacro19542 Vaccinium macrocarpon HOM05D005923 ORTHO05D007376 3.5e-114 416.8 367 56.7
Pp3c8_13610 Physcomitrium patens HOM05D005923 ORTHO05D007376 1.6e-106 391.3 759 33.9
Pp3c23_21040 Physcomitrium patens HOM05D005923 ORTHO05D007376 8.0e-103 379.0 756 33.1
MD04G1248100 Malus domestica HOM05D005923 ORTHO05D007376 8.0e-95 352.4 334 56.0
Nn013s41460 Nelumbo nucifera HOM05D005923 ORTHO05D007376 2.3e-94 350.9 344 52.6
Actinidia06786 Actinidia chinensis HOM05D005923 ORTHO05D007376 4.9e-84 316.6 286 57.7
Atru.chr12.1696 Acer truncatum HOM05D005923 ORTHO05D007376 8.9e-70 269.2 189 63.0
Zm00001eb398210 Zea mays HOM05D005923 ORTHO05D007376 2.7e-66 257.7 557 32.3
Atru.chr12.1695 Acer truncatum HOM05D005923 ORTHO05D007376 1.4e-59 235.3 176 65.9
CDE06G0114 Ceratophyllum demersum HOM05D005923 ORTHO05D007376 1.7e-57 228.4 325 39.1
Atru.chr12.1663 Acer truncatum HOM05D005923 ORTHO05D007376 5.6e-56 223.4 138 76.1
Nn1g09626 Nelumbo nucifera HOM05D005923 ORTHO05D007376 3.1e-54 217.6 141 71.6
MD04G1248200 Malus domestica HOM05D005923 ORTHO05D007376 5.3e-54 216.9 167 59.3
Pp3c20_18430 Physcomitrium patens HOM05D005923 ORTHO05D007376 2.8e-39 167.9 560 28.2
Os03g0260100 Oryza sativa ssp. japonica HOM05D005923 ORTHO05D007376 6.3e-31 140.2 127 47.2
Atru.chr12.1656 Acer truncatum HOM05D005923 ORTHO05D007376 1.9e-27 128.6 123 52.0
AL3G13260 Arabidopsis lyrata HOM05D005923 ORTHO05D007376 1.7e-23 115.5 84 60.7
CDE02G4030 Ceratophyllum demersum HOM05D005923 ORTHO05D000203 1.0e-20 106.3 103 46.6
Cre11.g478456 Chlamydomonas reinhardtii HOM05D005923 ORTHO05D007376 5.7e-16 90.5 412 24.3
MD04G1248000 Malus domestica HOM05D005923 ORTHO05D007376 2.2e-12 78.6 75 52.0
Nitab4.5_0001853g0070 Nicotiana tabacum HOM05D005923 ORTHO05D007376 8.5e-12 76.6 80 50.0
Nitab4.5_0001853g0060 Nicotiana tabacum HOM05D005923 ORTHO05D007376 3.2e-11 74.7 80 48.8
Ciclev10013254m.g Citrus clementina HOM05D005923 ORTHO05D007376 2.7e-10 71.6 101 43.6
SMO335G0023 Selaginella moellendorffii HOM05D047118 ORTHO05D007376 1.7e-07 62.4 131 35.1
Ciclev10023289m.g Citrus clementina HOM05D005923 ORTHO05D007376 1.1e-06 59.7 47 59.6


User provided reference genes

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